Last updated: 2019-02-19
workflowr checks: (Click a bullet for more information) ✔ R Markdown file: up-to-date
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
✔ Repository version: f3edec6
wflow_publish
or wflow_git_commit
). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
Ignored files:
Ignored: .Rhistory
Ignored: .Rproj.user/
Untracked files:
Untracked: code/alldata_compiler.R
Untracked: code/contab_maker.R
Untracked: code/mut_excl_genes_datapoints.R
Untracked: code/mut_excl_genes_generator.R
Untracked: code/quadratic_solver.R
Untracked: code/simresults_generator.R
Untracked: code/tcga_skcm_data_parser.Rmd
Untracked: data/All_Data_V2.csv
Untracked: data/all_data.csv
Untracked: data/tcga_luad_expression/
Untracked: data/tcga_skcm_expression/
Untracked: docs/figure/Filteranalysis.Rmd/
Untracked: docs/figure/TCGA_luad_data_parser.Rmd/
Untracked: filteranalysisheatmap.pdf
Untracked: output/alkati_filtercutoff_allfilters.csv
Untracked: output/alkati_luad_exonimbalance.pdf
Untracked: output/alkati_mtn_pval_fig2B.pdf
Untracked: output/alkati_skcm_exonimbalance.pdf
Untracked: output/all_data_luad.csv
Untracked: output/all_data_skcm.csv
Untracked: output/fig2b2_filtercutoff_atinras_totalalk.pdf
Untracked: output/fig2b_filtercutoff_atibraf.pdf
Untracked: output/fig2b_filtercutoff_atinras.pdf
Untracked: output/luad_alk_exon_expression.csv
Untracked: output/skcm_alk_exon_expression.csv
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
File | Version | Author | Date | Message |
---|---|---|---|---|
html | 4b082e4 | haiderinam | 2019-02-19 | Build site. |
html | 08e9438 | haiderinam | 2019-02-17 | Build site. |
Rmd | 33e1acb | haiderinam | 2019-02-17 | Published Analysis on ALK expression levels #3 |
html | dfdb600 | haiderinam | 2019-02-17 | Build site. |
html | 0cad4ec | haiderinam | 2019-02-16 | Build site. |
html | 5d432fb | haiderinam | 2019-02-11 | Build site. |
Rmd | 4c89be3 | haiderinam | 2019-02-11 | Publish the initial files for myproject |
html | d46a9cb | haiderinam | 2019-02-11 | Build site. |
Rmd | 644865d | haiderinam | 2019-02-11 | Start workflowr project. |
Welcome to my research website. Click on this link to see my results.
Click on this link to see my results on ALK-expression in SKCM.
Click on this link to see my results on ALKATI filter Click on this link to see my results on ALK expression in LUAD. What’s in each directory: Data: contains data downloaded from internet Output: contains data that your code makes Analysis: contains your Rmarkdown files that are converted to PDFs Code: contains .R files that are functions that your Rmd files in the analysis folder goes off of
This reproducible R Markdown analysis was created with workflowr 1.1.1