bwOverlapIterator_t Struct Reference

A structure to hold iterations One of intervals and entries should be used to access records from bigWig or bigBed files, respectively. More...

#include <bigWig.h>

Data Fields
bigWigFile_t *	bw
uint32_t	tid
uint32_t	start
uint32_t	end
uint64_t	offset
uint32_t	blocksPerIteration
int	withString
void *	blocks
bwOverlappingIntervals_t *	intervals
bbOverlappingEntries_t *	entries
void *	data

Detailed Description

A structure to hold iterations One of intervals and entries should be used to access records from bigWig or bigBed files, respectively.

Field Documentation

blocks

void* bwOverlapIterator_t::blocks

Overlapping blocks.

blocksPerIteration

uint32_t bwOverlapIterator_t::blocksPerIteration

Number of blocks to use per iteration.

bw

bigWigFile_t* bwOverlapIterator_t::bw

Pointer to the bigWig/bigBed file.

data

void* bwOverlapIterator_t::data

Points to either intervals or entries. If there are no further intervals/entries, then this is NULL. Use this to test for whether to continue iterating.

end

uint32_t bwOverlapIterator_t::end

End position of the query interval.

entries

bbOverlappingEntries_t* bwOverlapIterator_t::entries

Overlapping entries (or NULL).

intervals

bwOverlappingIntervals_t* bwOverlapIterator_t::intervals

Overlapping intervals (or NULL).

offset

uint64_t bwOverlapIterator_t::offset

Offset into the blocks.

start

uint32_t bwOverlapIterator_t::start

Start position of the query interval.

tid

uint32_t bwOverlapIterator_t::tid

The contig/chromosome ID.

withString

int bwOverlapIterator_t::withString

For bigBed entries, whether to return the string with the entries.

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The documentation for this struct was generated from the following file:

• bigWig.h