Last updated: 2018-07-22

workflowr checks: (Click a bullet for more information)

• ✔ R Markdown file: up-to-date

  Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

• ✔ Repository version: 302143d

  Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.
  
  Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

  
  Ignored files:
      Ignored:    .DS_Store
      Ignored:    .Rhistory
      Ignored:    .Rproj.user/
      Ignored:    docs/.DS_Store
      Ignored:    docs/images/.DS_Store
      Ignored:    output/.DS_Store
  
  Unstaged changes:
      Modified:   analysis/MASHvFLASHgtex2.Rmd
      Deleted:    analysis/license.Rmd
      Modified:   code/sims2.R
      Modified:   output/README.md
  
  

  Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

Expand here to see past versions:

File	Version	Author	Date	Message
html	f4ebd13	Jason Willwerscheid	2018-06-27	Build site.
Rmd	2ce499f	Jason Willwerscheid	2018-06-27	wflow_publish(c(“analysis/about.Rmd”, “analysis/index.Rmd”))
html	53ca12c	Jason Willwerscheid	2018-06-09	initial setup
Rmd	3314e19	Jason Willwerscheid	2018-06-09	Start workflowr project.

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One of the primary uses of mashr is to learn about how effects covary across conditions. In a series of analyses, I explore how flashr might be used to similar ends by comparing MASH and FLASH fits to simulated and real datasets.

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This reproducible R Markdown analysis was created with workflowr 1.0.1

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