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<h1 class="title toc-ignore">About</h1>

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<p><strong>Last updated:</strong> 2018-07-22</p>
<strong>workflowr checks:</strong> <small>(Click a bullet for more information)</small>
<ul>
<li>
<p><details> <summary> <strong style="color:blue;">✔</strong> <strong>R Markdown file:</strong> up-to-date </summary></p>
<p>Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.</p>
</details>
</li>
<li>
<p><details> <summary> <strong style="color:blue;">✔</strong> <strong>Repository version:</strong> <a href="https://github.com/willwerscheid/MASHvFLASH/tree/302143dc764a71d71a9e561fba1039f5216e3238" target="_blank">302143d</a> </summary></p>
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated. <br><br> Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use <code>wflow_publish</code> or <code>wflow_git_commit</code>). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
<pre><code>
Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    docs/.DS_Store
    Ignored:    docs/images/.DS_Store
    Ignored:    output/.DS_Store

Unstaged changes:
    Modified:   analysis/MASHvFLASHgtex2.Rmd
    Deleted:    analysis/license.Rmd
    Modified:   code/sims2.R
    Modified:   output/README.md

</code></pre>
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes. </details>
</li>
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<details> <summary> <small><strong>Expand here to see past versions:</strong></small> </summary>
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<a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/f4ebd13db6ae2a48d19f397e424b74b860cf6f1c/docs/about.html" target="_blank">f4ebd13</a>
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<td style="text-align:left;">
Jason Willwerscheid
</td>
<td style="text-align:left;">
2018-06-27
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Build site.
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<a href="https://github.com/willwerscheid/MASHvFLASH/blob/2ce499f27cbb6623a570da477eda1908d7bfbd39/analysis/about.Rmd" target="_blank">2ce499f</a>
</td>
<td style="text-align:left;">
Jason Willwerscheid
</td>
<td style="text-align:left;">
2018-06-27
</td>
<td style="text-align:left;">
wflow_publish(c(“analysis/about.Rmd”, “analysis/index.Rmd”))
</td>
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<td style="text-align:left;">
html
</td>
<td style="text-align:left;">
<a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/53ca12cfc814dac4103403256f3b2725ae85ff71/docs/about.html" target="_blank">53ca12c</a>
</td>
<td style="text-align:left;">
Jason Willwerscheid
</td>
<td style="text-align:left;">
2018-06-09
</td>
<td style="text-align:left;">
initial setup
</td>
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Rmd
</td>
<td style="text-align:left;">
<a href="https://github.com/willwerscheid/MASHvFLASH/blob/3314e19bf7c33df03ac2fd9ffe73faf33e13d06a/analysis/about.Rmd" target="_blank">3314e19</a>
</td>
<td style="text-align:left;">
Jason Willwerscheid
</td>
<td style="text-align:left;">
2018-06-09
</td>
<td style="text-align:left;">
Start workflowr project.
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<p></details></p>
<hr />
<p>One of the primary uses of <code>mashr</code> is to learn about how effects covary across conditions. In a series of analyses, I explore how <code>flashr</code> might be used to similar ends by comparing MASH and FLASH fits to simulated and real datasets.</p>

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  This reproducible <a href="http://rmarkdown.rstudio.com">R Markdown</a>
  analysis was created with
  <a href="https://github.com/jdblischak/workflowr">workflowr</a> 1.0.1
</p>
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