Last updated: 2018-08-05
workflowr checks: (Click a bullet for more information) ✔ R Markdown file: up-to-date
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
✔ Repository version: 3eaf629
wflow_publish
or wflow_git_commit
). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
Ignored files:
Ignored: .DS_Store
Ignored: .Rhistory
Ignored: .Rproj.user/
Ignored: data/
Ignored: docs/.DS_Store
Ignored: docs/images/.DS_Store
Ignored: docs/images/.Rapp.history
Ignored: output/.DS_Store
Ignored: output/.Rapp.history
Ignored: output/MASHvFLASHgtex/.DS_Store
Ignored: output/MASHvFLASHsims/.DS_Store
Ignored: output/MASHvFLASHsims/backfit/.DS_Store
Ignored: output/MASHvFLASHsims/backfit/.Rapp.history
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
File | Version | Author | Date | Message |
---|---|---|---|---|
Rmd | 3eaf629 | Jason Willwerscheid | 2018-08-05 | wflow_publish(“analysis/index.Rmd”) |
html | 6f6f821 | Jason Willwerscheid | 2018-08-05 | Build site. |
html | 1d57c08 | Jason Willwerscheid | 2018-08-04 | Build site. |
Rmd | c018ca3 | Jason Willwerscheid | 2018-08-04 | wflow_publish(c(“analysis/index.Rmd”, “analysis/Top20vZero.Rmd”)) |
html | 88ac9e1 | Jason Willwerscheid | 2018-08-04 | Build site. |
Rmd | 85bdd0b | Jason Willwerscheid | 2018-08-04 | wflow_publish(c(“analysis/OHFvTop20.Rmd”, “analysis/index.Rmd”)) |
html | 3d2274c | Jason Willwerscheid | 2018-08-04 | Build site. |
Rmd | 3cf1ff9 | Jason Willwerscheid | 2018-08-04 | wflow_publish(c(“analysis/index.Rmd”)) |
html | 592a427 | Jason Willwerscheid | 2018-08-03 | Build site. |
Rmd | 0d2b9b5 | Jason Willwerscheid | 2018-08-03 | wflow_publish(c(“analysis/index.Rmd”, “analysis/MASHvTop20.Rmd”)) |
html | 9867668 | Jason Willwerscheid | 2018-08-03 | Build site. |
Rmd | 5f31e16 | Jason Willwerscheid | 2018-08-03 | wflow_publish(c(“analysis/index.Rmd”, “analysis/MASHvTop20.Rmd”)) |
html | e78875c | Jason Willwerscheid | 2018-08-02 | Build site. |
Rmd | 0e165ca | Jason Willwerscheid | 2018-08-02 | wflow_publish(c(“analysis/MASHvOHF.Rmd”, “analysis/index.Rmd”)) |
html | 73c0870 | Jason Willwerscheid | 2018-08-02 | Build site. |
Rmd | 1f33586 | Jason Willwerscheid | 2018-08-02 | wflow_publish(“analysis/index.Rmd”) |
html | 7268602 | Jason Willwerscheid | 2018-08-01 | Build site. |
Rmd | ba83832 | Jason Willwerscheid | 2018-08-01 | wflow_publish(“analysis/index.Rmd”) |
html | c6f7e7a | Jason Willwerscheid | 2018-07-31 | Build site. |
Rmd | 9856748 | Jason Willwerscheid | 2018-07-31 | wflow_publish(“analysis/index.Rmd”) |
Rmd | 816d03c | Jason Willwerscheid | 2018-07-30 | wflow_publish(“analysis/index.Rmd”) |
Rmd | a5daba8 | Jason Willwerscheid | 2018-07-30 | wflow_publish(c(“analysis/MASHvFLASHgtex.Rmd”, |
html | 0c59b6b | Jason Willwerscheid | 2018-07-28 | Build site. |
Rmd | aee26f0 | Jason Willwerscheid | 2018-07-28 | wflow_publish(“analysis/index.Rmd”) |
html | 7e833c1 | Jason Willwerscheid | 2018-07-28 | Build site. |
Rmd | a3d67a7 | Jason Willwerscheid | 2018-07-28 | wflow_publish(“analysis/index.Rmd”) |
html | 76619ea | Jason Willwerscheid | 2018-07-22 | Build site. |
Rmd | 30e7d23 | Jason Willwerscheid | 2018-07-22 | wflow_publish(c(“analysis/index.Rmd”, |
html | fce2b77 | Jason Willwerscheid | 2018-07-22 | Build site. |
Rmd | 302143d | Jason Willwerscheid | 2018-07-22 | wflow_publish(c(“analysis/index.Rmd”, “analysis/about.Rmd”)) |
html | f4ebd13 | Jason Willwerscheid | 2018-06-27 | Build site. |
Rmd | 2ce499f | Jason Willwerscheid | 2018-06-27 | wflow_publish(c(“analysis/about.Rmd”, “analysis/index.Rmd”)) |
html | a9c6a2d | Jason Willwerscheid | 2018-06-26 | Build site. |
Rmd | e6b255b | Jason Willwerscheid | 2018-06-26 | wflow_publish(“analysis/index.Rmd”) |
html | 07d1fc7 | Jason Willwerscheid | 2018-06-24 | Build site. |
Rmd | 660d4c5 | Jason Willwerscheid | 2018-06-24 | wflow_publish(c(“analysis/index.Rmd”)) |
html | 97fa87c | Jason Willwerscheid | 2018-06-24 | Build site. |
Rmd | 42cd89c | Jason Willwerscheid | 2018-06-24 | wflow_publish(c(“analysis/MASHvFLASHsims2.Rmd”, |
html | 05ddaac | Jason Willwerscheid | 2018-06-18 | Build site. |
Rmd | 59c9e8e | Jason Willwerscheid | 2018-06-18 | wflow_publish(“analysis/index.Rmd”) |
html | c7561ae | Jason Willwerscheid | 2018-06-18 | Build site. |
Rmd | 6422a12 | Jason Willwerscheid | 2018-06-18 | wflow_publish(“analysis/index.Rmd”) |
html | 55504ec | Jason Willwerscheid | 2018-06-16 | Build site. |
Rmd | 94b77ff | Jason Willwerscheid | 2018-06-16 | wflow_publish(“analysis/index.Rmd”) |
html | 95f1aca | Jason Willwerscheid | 2018-06-15 | Build site. |
Rmd | 2052215 | Jason Willwerscheid | 2018-06-15 | wflow_publish(“analysis/index.Rmd”) |
html | 958fa1e | Jason Willwerscheid | 2018-06-11 | Build site. |
Rmd | 99104f2 | Jason Willwerscheid | 2018-06-11 | wflow_publish(“analysis/index.Rmd”) |
html | a738d4a | Jason Willwerscheid | 2018-06-09 | Build site. |
Rmd | 6e63015 | Jason Willwerscheid | 2018-06-09 | wflow_publish(“analysis/index.Rmd”) |
html | 53ca12c | Jason Willwerscheid | 2018-06-09 | initial setup |
Rmd | 3314e19 | Jason Willwerscheid | 2018-06-09 | Start workflowr project. |
MASH v FLASH simulation results. Compares MASH and FLASH fits to data simulated from MASH and FLASH models.
MASH v FLASH detailed simulation study. Compares the performance of MASH and FLASH on different covariance structures in a single simulation setting.
MASH v FLASH analysis of GTEx data (strong tests). Compares MASH and FLASH fits to “strong” tests from the GTEx dataset.
MASH v FLASH analysis of GTEx data (random tests). Same, but uses random tests from the GTEx dataset.
MASH v FLASH workflows for GTEx. Proposes improved workflows to obtain MASH and FLASH fits to GTEx data. Describes the MASH fit and five different FLASH fits (“OHF”, “Top 5”, “Top 10”, “Top 20”, and “Zero”) in detail.
Next up is a series of analyses that examine individual tests in an effort to identify salient differences among fits:
This reproducible R Markdown analysis was created with workflowr 1.0.1