Last updated: 2019-06-25

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• ✔ R Markdown file: up-to-date

  Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

• ✔ Repository version: 0dd65cc

  Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.
  
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  Ignored files:
      Ignored:    .Rhistory
      Ignored:    .Rproj.user/
  
  Untracked files:
      Untracked:  analysis/figure/
      Untracked:  analysis/ldl_cad_cache/
      Untracked:  example_data/CAD_META.gz
      Untracked:  example_data/genome_wide_pruned_vars.1.RDS
      Untracked:  example_data/glg_ldl__vanderHarst_cad_cause.RDS
      Untracked:  example_data/glg_ldl__vanderHarst_cad_data.RDS
      Untracked:  example_data/glg_ldl__vanderHarst_cad_grid.RDS
      Untracked:  example_data/jointGwasMc_LDL.txt.gz
      Untracked:  example_data/ld_data.tar.gz
      Untracked:  example_data/ld_data/
      Untracked:  example_data/ldl_cad_cause.RDS
      Untracked:  example_data/ldl_cad_cause.old_grid.RDS
      Untracked:  example_data/ldl_cad_params.RDS
      Untracked:  example_data/snp_overlap.txt
      Untracked:  example_data/snp_overlap_ldpruned.txt
      Untracked:  example_data/top_ldl_pruned_vars.1.RDS
      Untracked:  ll_v7_notes.Rmd
      Untracked:  matrix_lik.RDS
      Untracked:  quantile_sampling.R
      Untracked:  simulations/
      Untracked:  src/RcppExports.o
      Untracked:  src/log_likelihood_functions.o
      Untracked:  test_data/
  
  Unstaged changes:
      Modified:   analysis/ldl_cad.Rmd
  
  

  Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

Expand here to see past versions:

File	Version	Author	Date	Message
html	286f4e9	Jean Morrison	2019-06-25	Build site.
Rmd	8f3b82e	Jean Morrison	2019-06-25	wflow_publish(files = c(“analysis/about.Rmd”, “analysis/index.Rmd”, “analysis/ldl_cad.Rmd”, “analysis/license.Rmd”,
html	46b159a	Jean Morrison	2018-10-17	Build site.
Rmd	19edfa4	Jean Morrison	2018-10-17	wflow_git_commit(“analysis/index.Rmd”)
html	f15238b	Jean Morrison	2018-10-14	Build site.
Rmd	d163752	Jean Morrison	2018-10-14	update about and index
Rmd	efc43ef	Jean Morrison	2018-10-14	Start workflowr project.

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Weclome to the CAUSE website!

Find a pre-print of the paper here.

CAUSE is a Mendelian Randomization method using genome-wide summary statistics. CAUSE models both horizontal and correlated pleiotropy in order to avoid false positives that can occur using other methods.

In this website you will find:

• A tutorial on how to use the cause R package
• Instructions for replicating simulations in the paper
• Instructions for replicating data analysis in the paper (coming soon)

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This reproducible R Markdown analysis was created with workflowr 1.1.1

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