Last updated: 2018-10-17
workflowr checks: (Click a bullet for more information) ✔ R Markdown file: up-to-date
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
✔ Repository version: 73690eb
wflow_publish
or wflow_git_commit
). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
Ignored files:
Ignored: .Rhistory
Ignored: .Rproj.user/
Untracked files:
Untracked: X.RDS
Untracked: analysis/ldl_cad_cache/
Untracked: data/CAD_META.gz
Untracked: data/genome_wide_pruned_vars.1.RDS
Untracked: data/glg_ldl__vanderHarst_cad_cause.RDS
Untracked: data/glg_ldl__vanderHarst_cad_data.RDS
Untracked: data/glg_ldl__vanderHarst_cad_grid.RDS
Untracked: data/jointGwasMc_LDL.txt.gz
Untracked: data/ld_data.tar.gz
Untracked: data/ld_data/
Untracked: data/ldl_cad_cause.RDS
Untracked: data/ldl_cad_cause.old_grid.RDS
Untracked: data/ldl_cad_params.RDS
Untracked: data/snp_overlap.txt
Untracked: data/snp_overlap_ldpruned.txt
Untracked: data/top_ldl_pruned_vars.1.RDS
Untracked: ll_v7_notes.Rmd
Untracked: matrix_lik.RDS
Untracked: src/RcppExports.o
Untracked: src/log_likelihood_functions.o
Untracked: test_cause.R
Untracked: test_data/
Untracked: test_mixSQP.R
Unstaged changes:
Modified: src/cause.so
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
Weclome to the CAUSE website!
This website is intended to contain supporting information for the CAUSE R package which you can find at github.com/jean997/cause. We are currently adding to it frequently so check back for more.
Find a walk-through of how to use CAUSE with genome-wide summary statistics here
This reproducible R Markdown analysis was created with workflowr 1.1.1