Last updated: 2018-08-26

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• ✔ R Markdown file: up-to-date

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• ✔ Repository version: cae617f

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  Ignored files:
      Ignored:    .DS_Store
      Ignored:    .Rhistory
      Ignored:    .Rproj.user/
      Ignored:    .vscode/
      Ignored:    code/.DS_Store
      Ignored:    data/raw/
      Ignored:    src/.DS_Store
      Ignored:    src/.ipynb_checkpoints/
      Ignored:    src/Rmd/.Rhistory
  
  Untracked files:
      Untracked:  Snakefile_clonality
      Untracked:  Snakefile_somatic_calling
      Untracked:  code/analysis_for_garx.Rmd
      Untracked:  code/selection/
      Untracked:  code/yuanhua/
      Untracked:  data/canopy/
      Untracked:  data/cell_assignment/
      Untracked:  data/de_analysis_FTv62/
      Untracked:  data/donor_info_070818.txt
      Untracked:  data/donor_info_core.csv
      Untracked:  data/donor_neutrality.tsv
      Untracked:  data/exome-point-mutations/
      Untracked:  data/fdr10.annot.txt.gz
      Untracked:  data/human_H_v5p2.rdata
      Untracked:  data/human_c2_v5p2.rdata
      Untracked:  data/human_c6_v5p2.rdata
      Untracked:  data/neg-bin-rsquared-petr.csv
      Untracked:  data/neutralitytestr-petr.tsv
      Untracked:  data/sce_merged_donors_cardelino_donorid_all_qc_filt.rds
      Untracked:  data/sce_merged_donors_cardelino_donorid_all_with_qc_labels.rds
      Untracked:  data/sce_merged_donors_cardelino_donorid_unstim_qc_filt.rds
      Untracked:  data/sces/
      Untracked:  data/selection/
      Untracked:  data/simulations/
      Untracked:  data/variance_components/
      Untracked:  docs/figure/selection_models.Rmd/
      Untracked:  docs/figure/tech_effects.Rmd/
      Untracked:  figures/
      Untracked:  output/differential_expression/
      Untracked:  output/donor_specific/
      Untracked:  output/line_info.tsv
      Untracked:  output/nvars_by_category_by_donor.tsv
      Untracked:  output/nvars_by_category_by_line.tsv
      Untracked:  output/variance_components/
      Untracked:  references/
      Untracked:  tree.txt
  
  

  Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

Expand here to see past versions:

File	Version	Author	Date	Message
html	36acf15	davismcc	2018-08-25	Build site.
html	090c1b9	davismcc	2018-08-24	Build site.
html	d2e8b31	davismcc	2018-08-19	Build site.
html	1489d32	davismcc	2018-08-17	Add html files
Rmd	6b5f8c7	davismcc	2018-08-17	Updating organisational pages.
html	9856275	davismcc	2018-08-07	Build site.
Rmd	5fc189d	davismcc	2018-08-07	Start workflowr project.

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This reproducible R Markdown analysis was created with workflowr 1.1.1

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