Last updated: 2018-08-19

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• ✔ R Markdown file: up-to-date

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• ✔ Repository version: 1282018

  Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.
  
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  Ignored files:
      Ignored:    .DS_Store
      Ignored:    .Rproj.user/
  
  Untracked files:
      Untracked:  analysis/overview_lines.Rmd
      Untracked:  code/analysis_for_garx.Rmd
      Untracked:  data/canopy/
      Untracked:  data/cell_assignment/
      Untracked:  data/de_analysis_FTv62/
      Untracked:  data/donor_info_070818.txt
      Untracked:  data/donor_neutrality.tsv
      Untracked:  data/fdr10.annot.txt.gz
      Untracked:  data/high-vs-low-exomes.v62.ft.alldonors-filt_lenient.all_filt_sites.vep_most_severe_csq.txt
      Untracked:  data/high-vs-low-exomes.v62.ft.filt_lenient-alldonors.txt.gz
      Untracked:  data/human_H_v5p2.rdata
      Untracked:  data/human_c2_v5p2.rdata
      Untracked:  data/human_c6_v5p2.rdata
      Untracked:  data/sce_merged_donors_cardelino_donorid_all_qc_filt.rds
      Untracked:  data/sce_merged_donors_cardelino_donorid_all_with_qc_labels.rds
      Untracked:  data/sce_merged_donors_cardelino_donorid_unstim_qc_filt.rds
      Untracked:  data/sces/
      Untracked:  data/simulations/
      Untracked:  data/variance_components/
      Untracked:  docs/figure/
      Untracked:  figures/
      Untracked:  output/differential_expression/
      Untracked:  output/donor_specific/
      Untracked:  output/nvars_by_category_by_donor.tsv
      Untracked:  output/nvars_by_category_by_line.tsv
      Untracked:  output/variance_components/
  
  Unstaged changes:
      Modified:   analysis/analysis_for_joxm.Rmd
  
  

  Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

Expand here to see past versions:

File	Version	Author	Date	Message
html	1489d32	davismcc	2018-08-17	Add html files
Rmd	6b5f8c7	davismcc	2018-08-17	Updating organisational pages.
html	9856275	davismcc	2018-08-07	Build site.
Rmd	5fc189d	davismcc	2018-08-07	Start workflowr project.

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This reproducible R Markdown analysis was created with workflowr 1.1.1

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