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tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n#0.000000 tmp\r\n" } ], "rct-parse": [ { "name": "rct", "input": "V_in: =2*A;\r\n//!! in case of influx the left part of the equation is empty\r\nV1: 2*A+C=4*B+D;\r\nV2: D=C;\r\nV_out: B=;// in case of efflux the right part of the equation is empty\r\n", "expected": { "sourceFormat": "RCT", "content": [ { "type": "reaction", "id": "V_in", "left": [], "right": [ { "type": "species", "stoichiometry": "2", "species": "A" } ] }, { "type": "lineComment", "header": 2, "value": " in case of influx the left part of the equation is empty", "newLine": true }, { "type": "reaction", "id": "V1", "left": [ { "type": "species", "stoichiometry": "2", "species": "A" }, { "type": "species", "stoichiometry": "1", "species": "C" } ], "right": [ { "type": "species", "stoichiometry": "4", "species": "B" }, { "type": "species", "stoichiometry": "1", "species": "D" } ] }, { "type": "reaction", "id": "V2", "left": [ { "type": "species", "stoichiometry": "1", "species": "D" } ], "right": [ { "type": "species", "stoichiometry": "1", "species": "C" } ] }, { "type": "reaction", "id": "V_out", "left": [ { "type": "species", "stoichiometry": "1", "species": "B" } ], "right": [] }, { "type": "lineComment", "header": 0, "value": " in case of efflux the right part of the equation is empty", "newLine": false } ] } } ], "rct-serialize": [ { "name": "rct", "input": { "sourceFormat": "RCT", "content": [ { "type": "reaction", "id": "V_in", "left": [], "right": [ { "type": "species", "stoichiometry": "2", "species": "A" } ] }, { "type": "lineComment", "header": 2, "value": " in case of influx the left part of the equation is empty", "newLine": true }, { "type": "reaction", "id": "V1", "left": [ { "type": "species", "stoichiometry": "2", "species": "A" }, { "type": "species", "stoichiometry": "1", "species": "C" } ], "right": [ { "type": "species", "stoichiometry": "4", "species": "B" }, { "type": "species", "stoichiometry": "1", "species": "D" } ] }, { "type": "reaction", "id": "V2", "left": [ { "type": "species", "stoichiometry": "1", "species": "D" } ], "right": [ { "type": "species", "stoichiometry": "1", "species": "C" } ] }, { "type": "reaction", "id": "V_out", "left": [ { "type": "species", "stoichiometry": "1", "species": "B" } ], "right": [] }, { "type": "lineComment", "header": 0, "value": " in case of efflux the right part of the equation is empty", "newLine": false } ] }, "expected": "V_in: =2*A;\r\n//!! in case of influx the left part of the equation is empty\r\nV1: 2*A+C=4*B+D;\r\nV2: D=C;\r\nV_out: B=;// in case of efflux the right part of the equation is empty\r\n" } ] }