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"value": "pw" }, { "type": "strings", "value": [ ".dat" ] } ] ] }, { "key": "\nRight Hand Sides && \nInitial Values && \nComments Or Selkov DB record", "rawValue": [ "\n//! Pools \nCoA=-AcCoA+Pool[1];// for CoA+AcCoA \n//! Rate laws \n//i_isl=P[1]; \n//i_ms=P[2]; \nV[1]=Vm_1*(OA*AcCoA-ICit*CoA/Keq_1)/(Km_OA_1+OA+(Km_OA_1/Km_ICit_1)*ICit); \nV[2]=(1-i_icl/100)*Vm_2*(ICit-Suc*GlOx/Keq_2)/(Km_ICit_2+ICit)/(1+Suc/Ki_Suc_2)/(1+Mal/Ki_Mal_2); \nV[3]=(1-i_ms/100)*Vm_3*(GlOx*AcCoA-Mal*CoA/Keq_3)/(Km_GlOx_3+GlOx+(Km_GlOx_3/Km_Mal_3)*Mal); \nV[4]=Vm_4*(Mal*NAD-OA*NADH/Keq_4)/(Km_Mal_4+Mal+(Km_Mal_4/Km_OA_4)*OA); \nV[5]=Vm_5*ICit*NADP/(Km_ICit_5+ICit)/(1+GlOx/Ki_GlOx_5)/(1+OA/Ki_OA_5); \nV[6]=k6*CoA; \nV[7]=Vm_7*(Suc-Mal/Keq_7)/(Km_Suc_7+Suc+(Km_Suc_7/Km_Mal_7)*Mal); \nV[8]=k8*Suc; \n//! Differential equations \n//for ICit \nF[1]=V[1]-V[2]-V[5]; \n//for GlOx \nF[2]=V[2]-V[3]; \n//for Mal \nF[3]=V[3]-V[4]+V[7]; \n//for OA \nF[4]=-V[1]+V[4]; \n//for Suc \nF[5]=V[2]-V[7]-V[8]; \n//for AcCoA \nF[6]=-V[1]-V[3]+V[6]; \n//for CoA \nF[7]=V[1]+V[3]-V[6]; \n//! Explicit functions ", "\n//! Data comments \n//! Compound administration \n//! Compound action on target \n//! Auxiliary parameters \n//! Compartment volumes \n//! Initial concentrations \nICit=1; \nGlOx=1; \nMal=1; \nOA=1; \nSuc=1; \nAcCoA=2; \nCoA=1; \n//! Kinetic parameters \n//********************************* \ni_icl=55.5;//0; \ni_ms=80;//0; \n//********************************* \nVm_1=50;// fp \nKeq_1=10;//fp \nKm_OA_1=0.04;// ec \nKm_ICit_1=1;//fp \n//******************************** \nVm_2=30; \nKeq_2=10; \nKm_ICit_2=0.145; \nKi_Suc_2=5; \nKi_Mal_2=5; \n//******************************** \nVm_3=50;//fp \nKeq_3=10;//fp \nKm_GlOx_3=0.02; \nKm_Mal_3=1;//fp \n//******************************** \nVm_4=50;//fp \nKeq_4=10;//fp \nKm_Mal_4=0.3;//ec \nKm_OA_4=0.06;//ec \n//******************************** \nVm_5=14;//70 \nKm_ICit_5=0.07; \nKi_GlOx_5=0.5;//fp \nKi_OA_5=0.5;//fp \n//********************************** \nk6=10;//10;//fp \n//********************************* \nVm_7=20;//fp \nKeq_7=1;//fp \nKm_Suc_7=0.2;//fp \nKm_Mal_7=0.1;//fp \n//*********************************** \nk8=5;//5;//fp \n//! Buffered concentrations \nNAD=2; \nNADH=1; \nNADP=2; \n//! Parameters for fitting \ni_icl=49; \ni_ms=70; \n// \ni_ms=0; \ni_icl=30.7; \nICit=1.044872e+00; \nGlOx=9.845177e-01; \nMal=1.039410e+00; \nOA=1.300135e+00; \nSuc=1.503710e+00; \nAcCoA=4.442447e-01; \nCoA=2.240200e+00; \n//! 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UserLaws\n

UserLaws\n

UserLaws\n

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