import type { HierarchyNode } from './hierarchy.ts';
import type { InterProScanResults } from './launchInterProScan.ts';
import type { BasicTrack, NodeWithIds, NodeWithIdsAndLength } from './types.ts';
import type { FileLocation as FileLocationType } from '@jbrowse/core/util/types';
import type { Instance } from '@jbrowse/mobx-state-tree';
import type { Theme } from '@mui/material';
/**
 * #stateModel MsaView
 * extends
 * - DialogQueueSessionMixin
 * - MSAModel
 * - Tree
 */
declare function stateModelFactory(): import("@jbrowse/mobx-state-tree").IModelType<{
    drawLabels: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    labelsAlignRight: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
    treeWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
    showBranchLen: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    drawTree: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    drawNodeBubbles: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
} & {
    bgColor: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    colorSchemeName: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
} & {
    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
    showDomains: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    hideGaps: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    allowedGappyness: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
    subFeatureRows: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    type: import("@jbrowse/mobx-state-tree").ISimpleType<"MsaView">;
    drawMsaLetters: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    height: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
    rowHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
    scrollY: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
    scrollX: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
    colWidth: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
    treeFilehandle: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISnapshotProcessor<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"UriLocation">;
        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>>, {
        locationType: "UriLocation";
        uri: string;
        internetAccountId: string | undefined;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }> | undefined;
    } | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>, import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | ({
        locationType: "UriLocation";
        uri: string;
    } & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"UriLocation">;
        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    }>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject)>, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    msaFilehandle: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISnapshotProcessor<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"UriLocation">;
        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>>, {
        locationType: "UriLocation";
        uri: string;
        internetAccountId: string | undefined;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }> | undefined;
    } | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>, import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | ({
        locationType: "UriLocation";
        uri: string;
    } & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"UriLocation">;
        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    }>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject)>, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    treeMetadataFilehandle: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISnapshotProcessor<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"UriLocation">;
        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>>, {
        locationType: "UriLocation";
        uri: string;
        internetAccountId: string | undefined;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }> | undefined;
    } | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>, import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | ({
        locationType: "UriLocation";
        uri: string;
    } & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"UriLocation">;
        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    }>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject)>, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    gffFilehandle: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISnapshotProcessor<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"UriLocation">;
        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>>, {
        locationType: "UriLocation";
        uri: string;
        internetAccountId: string | undefined;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }> | undefined;
    } | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>, import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | ({
        locationType: "UriLocation";
        uri: string;
    } & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"UriLocation">;
        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    }>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject)>, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    currentAlignment: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
    collapsed: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
    showOnly: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
    turnedOffTracks: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
    data: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
        tree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        msa: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        treeMetadata: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        gff: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
    }, {
        setTree(tree?: string): void;
        setMSA(msa?: string): void;
        setTreeMetadata(treeMetadata?: string): void;
        setGFF(gff?: string): void;
    }, import("@jbrowse/mobx-state-tree")._NotCustomized, {
        tree: string | undefined;
        msa: string | undefined;
        treeMetadata: string | undefined;
        gff: string | undefined;
    }>, [undefined]>;
    featureFilters: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
    relativeTo: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
}, {
    queueOfDialogs: [import("@jbrowse/core/util").DialogComponentType, any][];
} & {
    readonly DialogComponent: import("@jbrowse/core/util").DialogComponentType | undefined;
    readonly DialogProps: any;
} & {
    removeActiveDialog(): void;
    queueDialog(cb: (doneCallback: () => void) => [import("@jbrowse/core/util").DialogComponentType, unknown]): void;
} & {
    setTreeAreaWidth(n: number): void;
    setTreeWidth(n: number): void;
    setLabelsAlignRight(arg: boolean): void;
    setDrawTree(arg: boolean): void;
    setShowBranchLen(arg: boolean): void;
    setDrawNodeBubbles(arg: boolean): void;
    setDrawLabels(arg: boolean): void;
} & {
    setColorSchemeName(name: string): void;
    setBgColor(arg: boolean): void;
} & {
    /**
     * #volatile
     */
    headerHeight: number;
    /**
     * #volatile
     */
    status: {
        msg: string;
        url?: string;
    } | undefined;
    /**
     * #volatile
     * high resolution scale factor, helps make canvas look better on hi-dpi
     * screens
     */
    highResScaleFactor: number;
    /**
     * #volatile
     */
    loadingMSA: boolean;
    /**
     * #volatile
     */
    loadingTree: boolean;
    /**
     * #volatile
     */
    volatileWidth: number | undefined;
    /**
     * #volatile
     * resize handle width between tree and msa area, px
     */
    resizeHandleWidth: number;
    /**
     * #volatile
     * size of blocks of content to be drawn, px
     */
    blockSize: number;
    /**
     * #volatile
     * the currently mouse-hovered row
     */
    mouseRow: number | undefined;
    /**
     * #volatile
     * the currently mouse-hovered column
     */
    mouseCol: number | undefined;
    /**
     * #volatile
     * the currently mouse-click row
     */
    mouseClickRow: number | undefined;
    /**
     * #volatile
     * the currently mouse-click column
     */
    mouseClickCol: number | undefined;
    /**
     * #volatile
     * the currently hovered tree node ID and its descendant leaf names
     */
    hoveredTreeNode: {
        nodeId: string;
        descendantNames: string[];
    } | undefined;
    /**
     * #volatile
     * array of column indices to highlight
     */
    highlightedColumns: number[] | undefined;
    /**
     * #volatile
     * a dummy variable that is incremented when ref changes so autorun for
     * drawing canvas commands will run
     */
    nref: number;
    /**
     * #volatile
     */
    minimapHeight: number;
    /**
     * #volatile
     */
    conservationTrackHeight: number;
    /**
     * #volatile
     */
    marginLeft: number;
    /**
     * #volatile
     */
    error: unknown;
    /**
     * #volatile
     */
    interProAnnotations: undefined | Record<string, InterProScanResults>;
} & {
    /**
     * #action
     */
    drawRelativeTo(id: string | undefined): void;
    /**
     * #action
     */
    setHideGaps(arg: boolean): void;
    /**
     * #action
     */
    setAllowedGappyness(arg: number): void;
    /**
     * #action
     */
    setLoadingMSA(arg: boolean): void;
    /**
     * #action
     */
    setLoadingTree(arg: boolean): void;
    /**
     * #action
     */
    setWidth(arg: number): void;
    /**
     * #action
     * set the height of the view in px
     */
    setHeight(height: number): void;
    /**
     * #action
     * set error state
     */
    setError(error?: unknown): void;
    /**
     * #action
     * set mouse position (row, column) in the MSA
     */
    setMousePos(col?: number, row?: number): void;
    /**
     * #action
     * set hovered tree node and its descendants
     */
    setHoveredTreeNode(nodeId?: string): void;
    /**
     * #action
     * set highlighted columns
     */
    setHighlightedColumns(columns?: number[]): void;
    /**
     * #action
     */
    setShowDomains(arg: boolean): void;
    /**
     * #action
     */
    setSubFeatureRows(arg: boolean): void;
    /**
     * #action
     * set mouse click position (row, column) in the MSA
     */
    setMouseClickPos(col?: number, row?: number): void;
    /**
     * #action
     * set row height (px)
     */
    setRowHeight(n: number): void;
    /**
     * #action
     * set col width (px)
     */
    setColWidth(n: number): void;
    /**
     * #action
     * set scroll Y-offset (px)
     */
    setScrollY(n: number): void;
    /**
     * #action
     *
     */
    setCurrentAlignment(n: number): void;
    /**
     * #action
     */
    toggleCollapsed(node: string): void;
    /**
     * #action
     */
    setShowOnly(node?: string): void;
    /**
     * #action
     */
    setData(data: {
        msa?: string;
        tree?: string;
        treeMetadata?: string;
        gff?: string;
    }): void;
    /**
     * #action
     */
    setMSAFilehandle(msaFilehandle?: FileLocationType): void;
    /**
     * #action
     */
    setTreeFilehandle(treeFilehandle?: FileLocationType): void;
    /**
     * #action
     */
    setGFFFilehandle(gffFilehandle?: FileLocationType): void;
    /**
     * #action
     */
    setMSA(result: string): void;
    /**
     * #action
     */
    setTree(result: string): void;
    /**
     * #action
     */
    setTreeMetadata(result: string): void;
} & {
    /**
     * #getter
     * hideGaps takes effect when there are collapsed rows or allowedGappyness < 100
     */
    readonly hideGapsEffective: boolean;
    /**
     * #getter
     */
    readonly realAllowedGappyness: number;
    /**
     * #getter
     */
    readonly actuallyShowDomains: boolean;
    readonly viewInitialized: boolean;
    /**
     * #getter
     */
    readonly width: number;
} & {
    /**
     * #method
     * unused here, but can be used by derived classes to add extra items
     */
    extraViewMenuItems(): never[];
    /**
     * #getter
     */
    readonly colorScheme: Record<string, string>;
    /**
     * #getter
     */
    readonly header: Record<string, unknown>;
    /**
     * #getter
     */
    readonly alignmentNames: string[];
    /**
     * #getter
     */
    readonly noTree: boolean;
    readonly noDomains: boolean;
    menuItems(): never[];
    /**
     * #getter
     */
    readonly treeMetadata: any;
    /**
     * #getter
     */
    readonly MSA: import("msa-parsers").MSAParserType | null;
    /**
     * #getter
     */
    readonly numColumns: number;
    /**
     * #getter
     */
    readonly tree: NodeWithIds;
    /**
     * #getter
     */
    readonly rowNames: string[];
    /**
     * #getter
     */
    readonly mouseOverRowName: string | undefined;
    /**
     * #getter
     * Returns insertion info if mouse is hovering over an insertion indicator
     */
    readonly hoveredInsertion: {
        rowName: string;
        col: number;
        letters: string;
    } | undefined;
    /**
     * #getter
     */
    readonly root: HierarchyNode<NodeWithIds>;
    /**
     * #getter
     * widget width minus the tree area gives the space for the MSA
     */
    readonly msaAreaWidth: number;
    /**
     * #getter
     */
    readonly treeAreaWidthMinusMargin: number;
    /**
     * #getter
     */
    readonly blanks: number[];
    /**
     * #getter
     */
    readonly blanksSet: Set<number>;
    /**
     * #getter
     * Returns a map of row name to array of insertions with display position and letters
     */
    readonly insertionPositions: Map<string, {
        pos: number;
        letters: string;
    }[]>;
    /**
     * #getter
     */
    readonly rows: [string, string][];
    /**
     * #getter
     */
    readonly numRows: number;
    /**
     * #getter
     */
    readonly rowMap: Map<string, string>;
    /**
     * #getter
     */
    readonly columns: {
        [k: string]: string;
    };
    /**
     * #getter
     */
    readonly columns2d: string[];
    /**
     * #getter
     */
    readonly fontSize: number;
    /**
     * #getter
     */
    readonly colStats: Record<string, number>[];
    /**
     * #getter
     */
    readonly colStatsSums: number[];
    /**
     * #getter
     * Detects sequence type based on letters present in the alignment.
     * Returns 'dna', 'rna', or 'amino'.
     */
    readonly sequenceType: "dna" | "rna" | "amino";
    /**
     * #getter
     * Pre-computed consensus letter and percent identity color per column.
     * Used by percent_identity_dynamic color scheme.
     */
    readonly colConsensus: {
        letter: string;
        color: string | undefined;
    }[];
    /**
     * #getter
     * Pre-computed ClustalX colors per column.
     * Returns a map of letter -> color for each column.
     * ref http://www.jalview.org/help/html/colourSchemes/clustal.html
     */
    readonly colClustalX: Record<string, string>[];
    /**
     * #getter
     * Conservation score per column using Shannon entropy (biojs-msa style).
     * Conservation = (1 - H/Hmax) * (1 - gapFraction)
     * Returns values 0-1 where 1 = fully conserved, 0 = no conservation.
     */
    readonly conservation: number[];
    /**
     * #getter
     * generates a new tree that is clustered with x,y positions
     */
    readonly hierarchy: HierarchyNode<NodeWithIdsAndLength>;
    /**
     * #getter
     */
    readonly totalHeight: number;
    /**
     * #getter
     */
    readonly leaves: HierarchyNode<NodeWithIdsAndLength>[];
    /**
     * #getter
     */
    readonly allBranchesLength0: boolean;
    /**
     * #getter
     * effective showBranchLen accounting for allBranchesLength0
     */
    readonly showBranchLenEffective: boolean;
} & {
    /**
     * #getter
     */
    readonly totalWidth: number;
} & {
    /**
     * #getter
     */
    readonly dataInitialized: boolean | "" | undefined;
    /**
     * #getter
     */
    readonly blocksX: number[];
    /**
     * #getter
     */
    readonly blocksY: number[];
} & {
    /**
     * #getter
     */
    readonly blocks2d: (readonly [number, number])[];
    /**
     * #getter
     */
    readonly isLoading: boolean;
    /**
     * #getter
     */
    readonly maxScrollX: number;
    /**
     * #getter
     */
    readonly showMsaLetters: boolean;
    /**
     * #getter
     */
    readonly showTreeText: boolean;
} & {
    /**
     * #action
     */
    setDrawMsaLetters(arg: boolean): void;
    /**
     * #action
     * Calculate a neighbor joining tree from the current MSA using BLOSUM62 distances
     */
    calculateNeighborJoiningTreeFromMSA(): void;
    /**
     * #action
     */
    resetZoom(): void;
    /**
     * #action
     */
    zoomOutHorizontal(): void;
    /**
     * #action
     */
    zoomInHorizontal(): void;
    /**
     * #action
     */
    zoomInVertical(): void;
    /**
     * #action
     */
    zoomOutVertical(): void;
    /**
     * #action
     */
    zoomIn(): void;
    /**
     * #action
     */
    zoomOut(): void;
    /**
     * #action
     */
    doScrollY(deltaY: number): void;
    setInterProAnnotations(data: Record<string, InterProScanResults>): void;
    applyGFFText(gffText: string): void;
    /**
     * #action
     */
    doScrollX(deltaX: number): void;
    /**
     * #action
     */
    setScrollX(n: number): void;
    /**
     * #action
     */
    toggleTrack(id: string): void;
    /**
     * #action
     */
    setStatus(status?: {
        msg: string;
        url?: string;
    }): void;
} & {
    /**
     * #getter
     */
    readonly labelsWidth: number;
    /**
     * #getter
     */
    readonly secondaryStructureConsensus: string | undefined;
    /**
     * #getter
     */
    readonly seqConsensus: string | undefined;
    /**
     * #getter
     */
    readonly adapterTrackModels: BasicTrack[];
    /**
     * #getter
     */
    readonly tracks: BasicTrack[];
    /**
     * #getter
     */
    readonly turnedOnTracks: BasicTrack[];
    /**
     * #getter
     */
    readonly showHorizontalScrollbar: boolean;
    /**
     * #getter
     */
    readonly rowNamesSet: Map<string, number>;
    /**
     * #method
     * Return a row-specific letter at a visible column, or undefined if gap.
     *
     * @param rowName - The name of the row
     * @param visibleCol - The visible column index (what the user sees on screen)
     * @returns The letter at that position, or undefined if it's a gap
     */
    visibleColToRowLetter(rowName: string, visibleCol: number): string | undefined;
    /**
     * #method
     * Convert a visible column to a row-specific sequence position (0-based).
     * Returns undefined if the position is a gap in the sequence.
     *
     * @param rowName - The name of the row
     * @param visibleCol - The visible column index
     * @returns The sequence position (0-based), or undefined if it's a gap
     */
    visibleColToSeqPos(rowName: string, visibleCol: number): number | undefined;
    /**
     * #method
     * Convert a visible column to a row-specific sequence position (1-based).
     * Returns undefined if the position is a gap in the sequence.
     *
     * @param rowName - The name of the row
     * @param visibleCol - The visible column index
     * @returns The sequence position (1-based), or undefined if it's a gap
     */
    visibleColToSeqPosOneBased(rowName: string, visibleCol: number): number | undefined;
    /**
     * #method
     * Convert a global column index to a visible column index.
     * Returns undefined if the column is hidden (in blanks).
     * This is the inverse of visibleColToGlobalCol.
     *
     * @param globalCol - The global column index in the full MSA
     * @returns The visible column index, or undefined if the column is hidden
     */
    globalColToVisibleCol(globalCol: number): number | undefined;
    /**
     * #method
     * Convert a sequence position (ungapped) to a global column index.
     *
     * @param rowName - The name of the row
     * @param seqPos - The sequence position (0-based, ungapped)
     * @returns The global column index in the full MSA
     */
    seqPosToGlobalCol(rowName: string, seqPos: number): number;
    /**
     * #method
     * Convert a sequence position (ungapped) directly to a visible column index.
     * This combines seqPosToGlobalCol and globalColToVisibleCol.
     *
     * @param rowName - The name of the row
     * @param seqPos - The sequence position (0-based, ungapped)
     * @returns The visible column index, or undefined if the column is hidden
     */
    seqPosToVisibleCol(rowName: string, seqPos: number): number | undefined;
} & {
    /**
     * #getter
     * Returns information about the currently hovered cell
     */
    readonly hoveredCell: {
        rowName: string;
        col: number;
        base: string | undefined;
        seqPos: number | undefined;
    } | undefined;
    /**
     * #getter
     * widget width minus the tree area gives the space for the MSA
     */
    readonly msaAreaHeight: number;
    /**
     * #getter
     * total height of track area (px)
     */
    readonly totalTrackAreaHeight: number;
    readonly tidyInterProAnnotationTypes: Map<string, {
        id: string;
        name: string;
        accession: string;
        description: string;
        start: number;
        end: number;
    }>;
    readonly tidyInterProAnnotations: {
        id: string;
        name: string;
        accession: string;
        description: string;
        start: number;
        end: number;
    }[];
    readonly tidyFilteredInterProAnnotations: {
        id: string;
        name: string;
        accession: string;
        description: string;
        start: number;
        end: number;
    }[];
    readonly tidyFilteredGatheredInterProAnnotations: Record<string, {
        id: string;
        name: string;
        accession: string;
        description: string;
        start: number;
        end: number;
    }[]>;
} & {
    /**
     * #getter
     */
    readonly showVerticalScrollbar: boolean;
} & {
    /**
     * #getter
     */
    readonly verticalScrollbarWidth: 0 | 20;
    readonly fillPalette: {
        [k: string]: string;
    };
    readonly strokePalette: {
        [k: string]: string;
    };
    /**
     * #method
     */
    getRowData(name: string): {
        data: {
            name?: string;
            accession?: string;
            dbxref?: string;
        } | undefined;
        treeMetadata: any;
    };
} & {
    /**
     * #action
     */
    setHeaderHeight(arg: number): void;
    /**
     * #action
     */
    setConservationTrackHeight(arg: number): void;
    /**
     * #action
     */
    reset(): void;
    /**
     * #action
     */
    exportSVG(opts: {
        theme: Theme;
        includeMinimap?: boolean;
        includeTracks?: boolean;
        exportType: string;
    }): Promise<void>;
    /**
     * #action
     * internal, used for drawing to canvas
     */
    incrementRef(): void;
    initFilter(arg: string): void;
    setFilter(arg: string, flag: boolean): void;
    /**
     * #action
     */
    fit(): void;
    /**
     * #action
     */
    fitVertically(): void;
    /**
     * #action
     */
    fitHorizontally(): void;
    afterCreate(): void;
}, import("@jbrowse/mobx-state-tree")._NotCustomized, Omit<import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
    drawLabels: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    labelsAlignRight: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
    treeWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
    showBranchLen: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    drawTree: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    drawNodeBubbles: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
} & {
    bgColor: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    colorSchemeName: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
} & {
    id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
    showDomains: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    hideGaps: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    allowedGappyness: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
    subFeatureRows: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    type: import("@jbrowse/mobx-state-tree").ISimpleType<"MsaView">;
    drawMsaLetters: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    height: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
    rowHeight: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
    scrollY: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
    scrollX: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
    colWidth: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
    treeFilehandle: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISnapshotProcessor<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"UriLocation">;
        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>>, {
        locationType: "UriLocation";
        uri: string;
        internetAccountId: string | undefined;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }> | undefined;
    } | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>, import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | ({
        locationType: "UriLocation";
        uri: string;
    } & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"UriLocation">;
        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    }>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject)>, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    msaFilehandle: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISnapshotProcessor<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"UriLocation">;
        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>>, {
        locationType: "UriLocation";
        uri: string;
        internetAccountId: string | undefined;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }> | undefined;
    } | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>, import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | ({
        locationType: "UriLocation";
        uri: string;
    } & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"UriLocation">;
        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    }>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject)>, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    treeMetadataFilehandle: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISnapshotProcessor<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"UriLocation">;
        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>>, {
        locationType: "UriLocation";
        uri: string;
        internetAccountId: string | undefined;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }> | undefined;
    } | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>, import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | ({
        locationType: "UriLocation";
        uri: string;
    } & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"UriLocation">;
        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    }>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject)>, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    gffFilehandle: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISnapshotProcessor<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"UriLocation">;
        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>> | import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>>, {
        locationType: "UriLocation";
        uri: string;
        internetAccountId: string | undefined;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }> | undefined;
    } | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }>, import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | import("@jbrowse/mobx-state-tree").ModelInstanceType<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
    }, {}> | ({
        locationType: "UriLocation";
        uri: string;
    } & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"UriLocation">;
        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    }>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject)>, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
    currentAlignment: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
    collapsed: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
    showOnly: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
    turnedOffTracks: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
    data: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
        tree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        msa: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        treeMetadata: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
        gff: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
    }, {
        setTree(tree?: string): void;
        setMSA(msa?: string): void;
        setTreeMetadata(treeMetadata?: string): void;
        setGFF(gff?: string): void;
    }, import("@jbrowse/mobx-state-tree")._NotCustomized, {
        tree: string | undefined;
        msa: string | undefined;
        treeMetadata: string | undefined;
        gff: string | undefined;
    }>, [undefined]>;
    featureFilters: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
    relativeTo: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
}>, symbol>>;
export default stateModelFactory;
export type MsaViewStateModel = ReturnType<typeof stateModelFactory>;
export type MsaViewModel = Instance<MsaViewStateModel>;