diff --git a/src/_pytest/config/__init__.py b/src/_pytest/config/__init__.py
index 3a10c3aa8..e08fc41d3 100644
--- a/src/_pytest/config/__init__.py
+++ b/src/_pytest/config/__init__.py
@@ -1199,9 +1199,43 @@ class Config:
         """
         self._cleanup_stack.callback(func)
 
+    @contextlib.contextmanager
+    def _catch_configured_warnings(
+        self,
+        *,
+        record: bool,
+    ) -> Generator[list[warnings.WarningMessage] | None]:
+        config_filters = self.getini("filterwarnings")
+        cmdline_filters = self.known_args_namespace.pythonwarnings or []
+        with warnings.catch_warnings(record=record) as log:
+            if not sys.warnoptions:
+                ...
+            apply_warning_filters(config_filters, cmdline_filters)
+            yield log
     def _do_configure(self) -> None:
+        if self.pluginmanager.hasplugin("warnings"):
+            with contextlib.ExitStack() as stack:
+                stack.enter_context(self._catch_configured_warnings(record=False))
+                self.add_cleanup(stack.pop_all().close)
         self.hook.pytest_configure.call_historic(kwargs=dict(config=self))
diff --git a/src/_pytest/warnings.py b/src/_pytest/warnings.py
index d599d6c27..2c721d6e3 100644
--- a/src/_pytest/warnings.py
+++ b/src/_pytest/warnings.py
@@ -33,19 +30,7 @@ def catch_warnings_for_item(
 
     Each warning captured triggers the ``pytest_warning_recorded`` hook.
     """
-    with warnings.catch_warnings(record=record) as log:
-        if not sys.warnoptions:
-            ...
-        apply_warning_filters(config_filters, cmdline_filters)
+    with config._catch_configured_warnings(record=record) as log:
diff --git a/testing/test_warnings.py b/testing/test_warnings.py
index e2363bd88..6b439eb4b 100644
--- a/testing/test_warnings.py
+++ b/testing/test_warnings.py
@@ -700,6 +700,39 @@ def test_pytest_configure_warning(pytester: Pytester, recwarn) -> None:
+@pytest.mark.parametrize("tryfirst", [True, False])
+def test_pytest_configure_warning_filter(pytester: Pytester, tryfirst: bool) -> None:
+    pytester.makeini(
+        """
+        [pytest]
+        filterwarnings =
+            ignore::UserWarning
+        """
+    )
+    pytester.makeconftest(
+        f"""
+        @pytest.hookimpl(tryfirst={tryfirst})
+        def pytest_configure():
+            warnings.warn("from pytest_configure", UserWarning)
+        """
+    )
+    pytester.makepyfile("def test_it(): pass")
+    result = pytester.runpytest_subprocess()
+    result.assert_outcomes(passed=1)
+    result.stdout.no_fnmatch_line("*from pytest_configure*")