/** * Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info. * * @author David Sehnal * @author Alexander Rose */ import { Column } from '../../../mol-data/db.js'; import { Model, IndexedCustomProperty } from '../../../mol-model/structure.js'; import { StructureElement, Structure } from '../../../mol-model/structure/structure.js'; import { ParamDefinition as PD } from '../../../mol-util/param-definition.js'; import { PropertyWrapper } from '../../../mol-model-props/common/wrapper.js'; import { CustomProperty } from '../../../mol-model-props/common/custom-property.js'; import { CustomModelProperty } from '../../../mol-model-props/common/custom-model-property.js'; export { StructureQualityReport }; type StructureQualityReport = PropertyWrapper<{ issues: IndexedCustomProperty.Residue; issueTypes: string[]; } | undefined>; declare namespace StructureQualityReport { const DefaultServerUrl = "https://www.ebi.ac.uk/pdbe/api/validation/residuewise_outlier_summary/entry/"; function getEntryUrl(pdbId: string, serverUrl: string): string; function isApplicable(model?: Model): boolean; const Schema: { pdbe_structure_quality_report: { updated_datetime_utc: Column.Schema.Str; }; pdbe_structure_quality_report_issues: { pdbx_PDB_model_num: Column.Schema.Int; issue_type_group_id: Column.Schema.Int; label_comp_id: Column.Schema.Str; label_seq_id: Column.Schema.Int; pdbx_PDB_ins_code: Column.Schema.Str; label_asym_id: Column.Schema.Str; label_entity_id: Column.Schema.Str; auth_comp_id: Column.Schema.Str; auth_seq_id: Column.Schema.Int; auth_asym_id: Column.Schema.Str; id: Column.Schema.Int; }; pdbe_structure_quality_report_issue_types: { group_id: Column.Schema.Int; issue_type: Column.Schema.Str; }; }; type Schema = typeof Schema; function fromJson(model: Model, data: any): { info: PropertyWrapper.Info; data: { issues: IndexedCustomProperty.Residue; issueTypes: string[]; } | undefined; }; function fromServer(ctx: CustomProperty.Context, model: Model, props: StructureQualityReportProps): Promise>; function fromCif(ctx: CustomProperty.Context, model: Model, props: StructureQualityReportProps): StructureQualityReport | undefined; function fromCifOrServer(ctx: CustomProperty.Context, model: Model, props: StructureQualityReportProps): Promise>; function getIssues(e: StructureElement.Location): string[]; function getIssueTypes(structure?: Structure): string[]; } export declare const StructureQualityReportParams: { serverUrl: PD.Text; }; export type StructureQualityReportParams = typeof StructureQualityReportParams; export type StructureQualityReportProps = PD.Values; export declare const StructureQualityReportProvider: CustomModelProperty.Provider;