import React from 'react';
import { Instance } from 'mobx-state-tree';
import { MenuItem } from '@jbrowse/core/ui';
import PluginManager from '@jbrowse/core/PluginManager';
export interface BpOffset {
    refName?: string;
    index: number;
    offset: number;
    start?: number;
    end?: number;
    coord?: number;
    reversed?: boolean;
    assemblyName?: string;
    oob?: boolean;
}
export default function stateModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
    displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
} & {
    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
    type: import("mobx-state-tree").ISimpleType<"LinearGenomeView">;
    offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
    bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
    displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
        refName: import("mobx-state-tree").ISimpleType<string>;
        start: import("mobx-state-tree").ISimpleType<number>;
        end: import("mobx-state-tree").ISimpleType<number>;
        reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
    } & {
        assemblyName: import("mobx-state-tree").ISimpleType<string>;
    }, {
        setRefName(newRefName: string): void;
    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
    tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
    hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<"hierarchical">, [undefined]>;
    trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
    showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
    showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
    showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
} & {
    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
    type: import("mobx-state-tree").ISimpleType<"LinearGenomeMultilevelView">;
    hideControls: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    isVisible: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    isAnchor: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    isOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
    limitBpPerPx: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<any, any, any>, [undefined]>;
    polygonPoints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<any, any, any>, [undefined]>;
}, {
    width: number;
} & {
    menuItems(): MenuItem[];
} & {
    setDisplayName(name: string): void;
    setWidth(newWidth: number): void;
} & {
    volatileWidth: number | undefined;
    minimumBlockWidth: number;
    draggingTrackId: string | undefined;
    volatileError: Error | undefined;
    afterDisplayedRegionsSetCallbacks: Function[];
    scaleFactor: number;
    trackRefs: {
        [key: string]: any;
    };
    coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
    coarseTotalBp: number;
    leftOffset: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").BpOffset | undefined;
    rightOffset: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").BpOffset | undefined;
    searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
    searchQuery: string | undefined;
    seqDialogDisplayed: boolean;
} & {
    readonly width: number;
    readonly interRegionPaddingWidth: number;
    readonly assemblyNames: string[];
} & {
    readonly assemblyErrors: string;
    readonly assembliesInitialized: boolean;
    readonly initialized: boolean;
    readonly hasDisplayedRegions: boolean;
    readonly isSearchDialogDisplayed: boolean;
    readonly scaleBarHeight: number;
    readonly headerHeight: number;
    readonly trackHeights: any;
    readonly trackHeightsWithResizeHandles: any;
    readonly height: any;
    readonly totalBp: number;
    readonly maxBpPerPx: number;
    readonly minBpPerPx: number;
    readonly error: string | Error;
    readonly maxOffset: number;
    readonly minOffset: number;
    readonly displayedRegionsTotalPx: number;
    renderProps(): any;
    searchScope(assemblyName: string): {
        assemblyName: string;
        includeAggregateIndexes: boolean;
        tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
    };
    getTrack(id: string): any;
    rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
    rewriteOnClicks(trackType: string, viewMenuActions: MenuItem[]): void;
    readonly trackTypeActions: Map<string, MenuItem[]>;
} & {
    setShowCytobands(flag: boolean): void;
    setWidth(newWidth: number): void;
    setError(error: Error | undefined): void;
    toggleHeader(): void;
    toggleHeaderOverview(): void;
    toggleNoTracksActive(): void;
    toggleShowGridlines(): void;
    scrollTo(offsetPx: number): number;
    zoomTo(bpPerPx: number): number;
    setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").BpOffset | undefined, right?: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").BpOffset | undefined): void;
    setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
    setGetSequenceDialogOpen(open: boolean): void;
    setNewView(bpPerPx: number, offsetPx: number): void;
    horizontallyFlip(): void;
    showTrack(trackId: string, initialSnapshot?: {} | undefined, displayInitialSnapshot?: {} | undefined): any;
    hideTrack(trackId: string): number;
} & {
    moveTrack(movingId: string, targetId: string): void;
    closeView(): void;
    toggleTrack(trackId: string): void;
    setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
    toggleCenterLine(): void;
    setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
    activateTrackSelector(): import("@jbrowse/core/util").Widget;
    getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").BpOffset | undefined, rightOffset?: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").BpOffset | undefined): {
        start: number;
        end: number;
        regionNumber?: number | undefined;
        reversed?: boolean | undefined;
        refName: string;
        assemblyName: string;
        key: string;
        offsetPx: number;
        widthPx: number;
        variant?: string | undefined;
        isLeftEndOfDisplayedRegion?: boolean | undefined;
    }[];
    afterDisplayedRegionsSet(cb: Function): void;
    horizontalScroll(distance: number): number;
    center(): void;
    showAllRegions(): void;
    showAllRegionsInAssembly(assemblyName?: string | undefined): void;
    setDraggingTrackId(idx?: string | undefined): void;
    setScaleFactor(factor: number): void;
} & {
    slide: (viewWidths: number) => void;
} & {
    zoom: (targetBpPerPx: number) => void;
} & {
    readonly canShowCytobands: boolean;
    readonly showCytobands: boolean;
    readonly anyCytobandsExist: boolean;
    readonly cytobandOffset: number;
} & {
    menuItems(): MenuItem[];
} & {
    readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
    readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
    readonly roundedDynamicBlocks: {
        start: number;
        end: number;
        regionNumber?: number | undefined;
        reversed?: boolean | undefined;
        refName: string;
        assemblyName: string;
        key: string;
        offsetPx: number;
        widthPx: number;
        variant?: string | undefined;
        isLeftEndOfDisplayedRegion?: boolean | undefined;
    }[];
    readonly visibleLocStrings: string;
    readonly coarseVisibleLocStrings: string;
} & {
    clearView(): void;
    setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
    afterAttach(): void;
} & {
    exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").ExportSvgOptions | undefined): Promise<void>;
    moveTo(start?: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").BpOffset | undefined, end?: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").BpOffset | undefined): void;
    navToLocString(locString: string, optAssemblyName?: string | undefined): void;
    navTo(query: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").NavLocation): void;
    navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/dist/LinearGenomeView").NavLocation[]): void;
} & {
    rubberBandMenuItems(): MenuItem[];
    bpToPx({ refName, coord, regionNumber, }: {
        refName: string;
        coord: number;
        regionNumber?: number | undefined;
    }): {
        index: number;
        offsetPx: number;
    } | undefined;
    centerAt(coord: number, refName: string, regionNumber: number): void;
    pxToBp(px: number): {
        coord: number;
        index: number;
        refName: string;
        oob: boolean;
        assemblyName: string;
        offset: number;
        start: number;
        end: number;
        reversed: boolean;
    };
    readonly centerLineInfo: {
        coord: number;
        index: number;
        refName: string;
        oob: boolean;
        assemblyName: string;
        offset: number;
        start: number;
        end: number;
        reversed: boolean;
    } | undefined;
} & {
    toggleControls(): void;
    toggleVisible(): void;
    toggleIsAnchor(): void;
    toggleIsOverview(): void;
    setLimitBpPerPx(limited: boolean, upperLimit?: number | undefined, lowerLimit?: number | undefined, apexUpperLimit?: number | undefined, apexLowerLimit?: number | undefined): void;
    setPolygonPoints(left: number, right: number, prevLeft: number, prevRight: number): void;
    zoomTo(bpPerPx: number): number;
    navToLocString(locString: string, optAssemblyName?: string | undefined): void;
    /**
     * moveIfAnchor is called when the user attempts to navigate using the rubberband functionality on the LGV
     * this navigation (move) is only performed on the anchor view (if anchor) and thus disabled if the user
     * attempts to rubber band nav on the 'sub' views. This way, we're able to navigate using the overview to
     * trigger the nav on the anchor (and because they're linked, the sub views as well) as well as on the
     * anchor track itself.
     */
    moveIfAnchor(leftOffset: BpOffset, rightOffset: BpOffset): void;
    closeView(): void;
    addView(isAbove: boolean): void;
} & {
    MiniControlsComponent(): React.FC<any>;
    HeaderComponent(): React.FC<any>;
    menuItems(): MenuItem[];
} & {
    rubberBandMenuItems(): MenuItem[];
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
export declare type LinearGenomeMultilevelViewStateModel = ReturnType<typeof stateModelFactory>;
export declare type LinearGenomeMultilevelViewModel = Instance<LinearGenomeMultilevelViewStateModel>;