{
  "plugins": [
    {
      "name": "GWAS",
      "url": "https://unpkg.com/jbrowse-plugin-gwas/dist/jbrowse-plugin-gwas.umd.production.min.js"
    }
  ],
  "assemblies": [
    {
      "name": "hg19",
      "aliases": ["GRCh37"],
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "Pd8Wh30ei9R",
        "adapter": {
          "type": "BgzipFastaAdapter",
          "fastaLocation": {
            "uri": "https://jbrowse.org/genomes/hg19/fasta/hg19.fa.gz"
          },
          "faiLocation": {
            "uri": "https://jbrowse.org/genomes/hg19/fasta/hg19.fa.gz.fai"
          },
          "gziLocation": {
            "uri": "https://jbrowse.org/genomes/hg19/fasta/hg19.fa.gz.gzi"
          }
        }
      },
      "refNameAliases": {
        "adapter": {
          "type": "RefNameAliasAdapter",
          "location": {
            "uri": "https://s3.amazonaws.com/jbrowse.org/genomes/hg19/hg19_aliases.txt"
          }
        }
      }
    }
  ],
  "tracks": [
    {
      "type": "GWASTrack",
      "trackId": "gwas_track",
      "name": "GWAS",
      "category": ["Annotation"],
      "assemblyNames": ["hg19"],
      "adapter": {
        "type": "BedTabixAdapter",
        "scoreColumn": "neg_log_pvalue",
        "bedGzLocation": {
          "uri": "https://s3.amazonaws.com/jbrowse.org/genomes/hg19/gwas/summary_stats.txt.gz"
        },
        "index": {
          "location": {
            "uri": "https://s3.amazonaws.com/jbrowse.org/genomes/hg19/gwas/summary_stats.txt.gz.tbi"
          },
          "indexType": "TBI"
        }
      },
      "displays": [
        {
          "displayId": "gwas_display",
          "type": "LinearManhattanDisplay"
        }
      ]
    },
    {
      "type": "GWASTrack",
      "trackId": "gwas_track_custom_color",
      "name": "GWAS (custom color)",
      "category": ["Annotation"],
      "assemblyNames": ["hg19"],
      "adapter": {
        "type": "BedTabixAdapter",
        "scoreColumn": "neg_log_pvalue",
        "bedGzLocation": {
          "uri": "https://s3.amazonaws.com/jbrowse.org/genomes/hg19/gwas/summary_stats.txt.gz"
        },
        "index": {
          "location": {
            "uri": "https://s3.amazonaws.com/jbrowse.org/genomes/hg19/gwas/summary_stats.txt.gz.tbi"
          },
          "indexType": "TBI"
        }
      },
      "displays": [
        {
          "displayId": "gwas_display_custom_color",
          "type": "LinearManhattanDisplay",
          "renderers": {
            "LinearManhattanRenderer": {
              "color": "green"
            }
          }
        }
      ]
    },
    {
      "type": "GWASTrack",
      "trackId": "gwas_track_custom_color_callback",
      "name": "GWAS (custom color callback)",
      "category": ["Annotation"],
      "assemblyNames": ["hg19"],
      "adapter": {
        "type": "BedTabixAdapter",
        "scoreColumn": "neg_log_pvalue",
        "bedGzLocation": {
          "uri": "https://s3.amazonaws.com/jbrowse.org/genomes/hg19/gwas/summary_stats.txt.gz"
        },
        "index": {
          "location": {
            "uri": "https://s3.amazonaws.com/jbrowse.org/genomes/hg19/gwas/summary_stats.txt.gz.tbi"
          },
          "indexType": "TBI"
        }
      },
      "displays": [
        {
          "displayId": "gwas_display_custom_color_callback_display",
          "type": "LinearManhattanDisplay",
          "renderers": {
            "LinearManhattanRenderer": {
              "color": "jexl:'hsl('+get(feature,'start')/100000+',50%,50%)'"
            }
          }
        }
      ]
    },
    {
      "type": "GWASTrack",
      "trackId": "gwas_track_custom_color_callback_and_tooltip",
      "name": "GWAS (custom color callback and tooltip)",
      "category": ["Annotation"],
      "assemblyNames": ["hg19"],
      "adapter": {
        "type": "BedTabixAdapter",
        "scoreColumn": "neg_log_pvalue",
        "bedGzLocation": {
          "uri": "https://s3.amazonaws.com/jbrowse.org/genomes/hg19/gwas/summary_stats.txt.gz"
        },
        "index": {
          "location": {
            "uri": "https://s3.amazonaws.com/jbrowse.org/genomes/hg19/gwas/summary_stats.txt.gz.tbi"
          },
          "indexType": "TBI"
        }
      },
      "displays": [
        {
          "displayId": "gwas_display_custom_color_callback_and_tooltip_display",
          "type": "LinearManhattanDisplay",
          "mouseover": "jexl:get(feature,'score')",
          "renderers": {
            "LinearManhattanRenderer": {
              "color": "jexl:'hsl('+get(feature,'start')/100000+',50%,50%)'"
            }
          }
        }
      ]
    }
  ]
}