[ { "_id": "EPlGT00820000103641", "root_id": 425644, "tree_stable_id": "EPlGT00820000103641", "node_id": 425644, "distance_to_parent": 0, "left_index": 1, "right_index": 1722, "taxon_id": 2759, "taxon_name": "Eukaryota", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4738603, "distance_to_parent": 0.963833, "left_index": 1712, "right_index": 1721, "taxon_id": 2763, "taxon_name": "Rhodophyta", "node_type": "speciation", "bootstrap": 94, "children": [ { "node_id": 425660, "distance_to_parent": 0.380698, "left_index": 1719, "right_index": 1720, "protein_stable_id": "CMM317CT", "gene_stable_id": "CMM317C", "sequence": "MPGSTQRGGWREQRPALSRGTPVNQRRWSAWLPRLSSLVDEQPVQDVLDEVQQLLLERSTWVTYEDGARGGASGRGANKPPAPFSSAGWERLQTLLEVEKALVSALGHHCEDVRDRAVVLLSVLYDGHPLQLAGDALPVAVTCVGEPVTVCIPFASEADREAFQPQRAVLRLFRPWPNKNKNGYTREVLSKQATNSLQLGGSRPPRSPSSDGPQQRKPSLATETGPNATSTSPSREQTAQDWTNAEEEAEQELPVGTHALWAACHGHWQSYPISVQGESILVHLGSFEQPGFYDWYIARASDGVASPLVIAHPVVYADVPGMDFRRLRGRFIVQPRGARAHRLYEIPVDQVGARWDATTGALLSRGSFDAVQELLPRLAASGITGIYVSGCLERRLDEHEPTPHTVVDRAMPATILGGVHKFRRMCAEARRHQLATIVDCLDRVSLARAHRRYRRIGYVRIVDAKRQVPALPHPGTDCHEVQWEDTALLNYRRLESWYSLIEDISQMATEHGAGGVRLDNAQCVPCVLAPDVTELARIDNDGIAHYDDEEKAFGDVVLANVEGGYWRTDAAIDGYPNPLLLKLTREMWHWNPSFLVLGESHFHRERNLIVSGLIPHTLRVATILAGISGKSLRRDGSVRALGENKHPTVDFIARLYRNDAHAIPSGAIMVGGTCSDTSPYPSVLYGRRAWTAVDMLCFLPDIPLLLLGEEDGRAYRINMASVSREVDPDTNLELEVPKSPRLGGHGLPRGSSVASGMSMLHLQQTSMGDVRRLKRSGSRETGLARLSSTNLLGRNTTNRRADSGSMSGAAAAMVRSRSTEDMLKLSIRSVSAEDIRQLDLAEEDIRREIGPQEGYDIRQIRGHYEHRLRLRASYEALREGHMVALVVREQAKYQVLAFARFTRQQIVLLFINVRGGHDGAPFAVPVDTIVDLRPLAEALVAAAFRNGCTYFGPWDRIIELRDCFTGAREPSRYAFEEFLFRRLQITLKPLETRILELCPSSEAAESSTDLHQQTVQRLDEDDEMLLDARANWLAGYLARHCYDLKAFARALGFLQGLLAPGKQQLTEARARHLMCVCLQRTALLAGEQEYPPHGFRAVSGERLLAYLMVLSSCGIDALRTVARRILSGNRMGPIVLFSPELGRFSSIGGLGTMVDELSKGLADLGLDVYVISPAYTFNRRGETRYLERDGIRWTRNIDVRIGNVGVATLGIFEGIENSVRLIFFENHSYFPRVYQDLGSQARMMEMLVLANRGVLEICCHKQLRPSLLVTNDWMGGLVPAYGRLGYFGGYFDDTCFFHIVHNLGDAAYEGRLYPSPAEAGFEAIHQLPRDIVIDPTWNRVVVNPSRAAFKCAHSWGTVSPSYLEELLTNHPLRPVMRLCRAPFGTSNGIRVQDRLALLRRVASSHEEAKSVLQSKYFGVTDPGIPVFAFVGRLTSQKGVHLILSATDALMNLAGPSKCQILIGGMANRADPYGADCARRCNELKQRYRGYFSADPDNFFHDGPLVNLGADFCLMPSLFEPGGIVQQEFFVVGTPVIAYRTGGLKDTVIEWDPVELTGSGFVFHEYTMDDFLAACKRALRVYAKPDEYQLLRESTREFVIDVAQVAEAWSREFHRVKNIIPCRDDVLALDLEAVASELSSAVKDGVCVPAVPVDIDWPDASASSVSVKGSFDGWSREWPLRRDSGKANAWERTFWLPPGTYEIKYRVDGEWLVHPHKPVTNTSGLLNNLLEVPRQTP", "cigar": "432D4M2D4M90DM15D3M60D5M76D7M455D32M3D34M21DM26D16M12D3M5D10M3D32MD6M34D16MDM30D8M57D16M65D73M12D16MDM29D5M2D3M17D7M6D2M17D10M5D31M3D2M46D11MD33M141D7MD19M53D20M392D2M96D13M38D3M12D16M4D13M217DMD3M13D5M13D5M7D3M6D8M50D5M2D6M6D23MD10M2D18MD13M5D2M27D10MD27MD6M31D35M28D36M17D26M29DM2D4M19D6MD11M3D20M46D3M2D14M4D42MD38M12D22MD58M2D18MD17M2D33M18D9M2D8M165D6M65D5M71D42M4D29M5D2MD2M2DM53D16M23DMD7M36D4M5DM80D9M21D8M23D2M44D12MD14M33D8M8DM13DM5DM13D2M5D4M2D7M3D12M15D11M16D16M30D4M17D4M23DM11D4M2D14M2D5M5D9M3D7M3D2M65D10MD8M10D3MD7M18D5M11D13M6D16M10D14M8D11M21DM7D6M6D4M38D6M7DM6D6M3D3M25D6M4D6M2D6M132D15M8D5M26DM11D2M17DM29D6M6D12M2D8MD2M11D12M11D5M3DM3D9M11D6M17D10M33D11M4D13M29D5M18D2M27D5M5D2M5D5M15DM28D4M9D4M19D14MD7MD3M18D3M30D5M4D4M2D4M15D4M4D27M2D5MD2M7D11M2D3M12D5M8D14M8D2M182D9M5D2MDM591D3M171D2M6D5M149DM139D5M143DM171D9M347D", "taxon_id": 280699, "taxon_name": "Cyanidioschyzon merolae strain 10D", "assembly": "ASM9120v1", "representative": { "id": "CMM317C", "score": 0 }, "domains": [ { "id": "IPR017853", "root": 17853, "start": 343, "end": 524, "name": "Glycoside_hydrolase_SF", "description": "Glycoside hydrolase superfamily" }, { "id": "IPR017853", "root": 17853, "start": 576, "end": 592, "name": "Glycoside_hydrolase_SF", "description": "Glycoside hydrolase superfamily" }, { "id": "IPR013534", "root": 13534, "start": 1134, "end": 1370, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1423, "end": 1579, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" }, { "id": "IPR014756", "root": 14756, "start": 1650, "end": 1733, "name": "Ig_E-set", "description": "Immunoglobulin E-set" } ] }, { "node_id": 4738606, "distance_to_parent": 0.211359, "left_index": 1713, "right_index": 1718, "taxon_id": 2763, "taxon_name": "Rhodophyta", "node_type": "speciation", "bootstrap": 94, "children": [ { "node_id": 425915, "distance_to_parent": 0.441279, "left_index": 1716, "right_index": 1717, "protein_stable_id": "EME31445", "gene_stable_id": "Gasu_14030", "gene_description": "starch synthase", "sequence": "MSSSPSELESSATWGASGADEDWENSSSSSDLEGIASSKLRKQTTQKQDYQNAVLSFFSGKDLGIPSLGRSSETLTMAPGGWERSCEVLYEYFLKQFASMDEQPVVVAFNELQTLLIRLQEDYRTVCAQKTSPGDVAGILGAFKTLERVLIPLLGHPVPEVRERTVILLNVLYDGHELQLTESLNVSVQCVGETADLEIPVHGLTDIREIDNYVLCLSETNRESYLAPCRWLRYSILYKNGYLKVKGLPGFSRSGFYDWYFAEKPKDVKPESSFVFLPPVSLPFCEARLQKGRIIVHPSNIRDSLLYELPVDQVDATWDSKTGELKKRGSFDLVAQRLPDLRLDGITHVYLMGALARPTDDPEAPPGEIADRSQPAAILGGAIAFKNLVSEANRLGVGTIVDGFCRVSRNAHHRKYNPLVVYTKNSEGLLIPHAGTDGRELQWDNTCLLNYRKFEAWELFYQDIYRLIHEFGIQGVRLDNAQSYPLIMKADLEELFRVDVDGELHYSLDDILHAKVVKTNEDCGYWLTEAALDFGYPNPFLVRLTKRIWNDFPNFIILAEAHFQREPQLAFSGVIPHTIRVAQILASICGQSLRRDGSVSKLPESRKSTARTLSRLYRSCKYTMPKGAIQLGCTCTHNSPYPGVLYGRRAWLAVDLLYFLPEVPILFYGEENGRMYRFNMATVSQSIETHPFYDVNYENVLPKSPRSTDSSSPADGISTLVLDELSHLDTDSPPSKALTTPSSAKKKKKKSSLFSLELKRSSGSSQSLVRSQSIDDVRGMSIRSVSVDDIGSLSRLEEDTRLKIGPGVGYDIRMIRGHYEHRLSIRMFHPAFRHGSLTILDVSLHLKEQVFAFVRSTDDSLIVVAMNMKCDLDGNEFREPCEVELDFKPLSETLRNEIYQKNEDKLFYFLECFTKESYPELLTFHELLFRKYPVKLKPLGTIVLSPERSTQSRENEHLHLEQCLARLQMDGVDMKDPRENALAWKLTRAAADSLQQFSNVFYDIYSLMSASGMLESTIVHLCSVCLQRATVPRYEAFYAPKNLIPPRGERVLSLLIHLSCCAKDFQFRKTCQKILKNISEIGPLVFVAPELGRFSTAGGLGVMVDELTKGLAALGSEVYVISPYYSVNRKGQWKYLEPDGIIWTRNIQVRVGSRDVTVGVYEGVEEGVHLIFLEQGEYYPKVYADMANQRRQLELIVLTSLASLEVLCQKSLPPALFITNDWIAALSAGYAKQGFFGSFFENTTFFHIIHNLGDAVYEGRVYPNESEGLFEDVHRLPVSLVFDPSWSQPIVNPSRCALLCSDTWGTVSNSYLEELVTFHPLKHILRLARCPFGYPNGIRKKEREALLKTRGGGSHLQAKTIIQQRFFQFQTLDASIPLFCFIGRVTSQKGVHLILQSVEQLIQFTGGKIQFLIGGPANRADPYAASCAVQMEYLRSRYPWQFWAAPDEFFTDGPLVNLGADFGMMPSMFEPGGIVQHEFFVAGTPVIAYRTGGLKDTVHEWDGDALEGNGFTFEDYALPAFVDATKRALRVFSRQDEYQELRKSAYESVIDVSQVAFAWYKEFHRLRNVIFRREALLQKEYVDCMSASCSYLSDNCRYVLFYWLDDDGGDRPVFLKGSFDGWSNRWCFEEYKPPLVKPDVTIECAISPKQKKPCRQLLLKLVPGSYTFKFLVQDEWQVSCLQAVVSEGIFQNNVMQIS", "cigar": "432D4M2D3M83D7MDMD5M7D32M6D7M8D2M8D7M76D7M444D25MD40M63D15M12D3M5D10M3D13MD18MD6M34DM6D6M100DM3D8M85D6M11D3M32D10M5D7M6D5MDM29D5M2D3M17D10M3D2M18D9M8D28M3D2M46D11MD33M141D7MD19M53D20M392D2M96D13M53D16M4D13M217DMD3M13D5M13D5M7D3M6D8M50D5M2D6M6D23MD10M2D32M5D2M27D10MD27MD6M31D35M28D36M17D30M25DM2D4M19D6MD10M8D31M31D2M3D5M4D5M19D27MD38M12D22MD64M8D6MD17M2D33M18D4MD4MD9M165D6M65D5M69DMD16M2D24M4D29M5D5M2D2M52D16M23DMD7M36D4M5DM80D9M21D8M23D2M44D12MD14M33D8M8DM13DM19D2M5D4M2D7M3D12M15D11M16D16M30D4M17D4M23DM11D4M2D14M2D5M5D9M3D7M3D2M65D10MD8M10D3MD7M18D5M11D13M6D16M10D14M8D11M21DM7D6M2DM3D4M38D6M7DM6D6M3D3M23D8M4D6M2D6M132D15M9D4M26DM11D2M17DM29D6M6D12M2D8M9D2M3D12M11D5M3DM3D9M11D6M17D10M33D11M4D13M29D5M19DM7DM19D5M5D2M5D5M15DM28D4M9D4M19D14MD7MD3M18D3M30D5M4D4M2D12M7D7MD2M6D2M9D15MD2M7D11M2D4M5D33M6D4M182D9M5D2MDM580DM11D2M107D2M62D2M8D3M149DM139D5M143DM171D5M351D", "taxon_id": 130081, "taxon_name": "Galdieria sulphuraria", "assembly": "ASM34128v1", "representative": { "id": "Gasu_14030", "score": -100 }, "domains": [ { "id": "IPR017853", "root": 17853, "start": 284, "end": 485, "name": "Glycoside_hydrolase_SF", "description": "Glycoside hydrolase superfamily" }, { "id": "IPR017853", "root": 17853, "start": 538, "end": 586, "name": "Glycoside_hydrolase_SF", "description": "Glycoside hydrolase superfamily" }, { "id": "IPR013534", "root": 13534, "start": 1085, "end": 1325, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1367, "end": 1530, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" }, { "id": "IPR014756", "root": 14756, "start": 1595, "end": 1688, "name": "Ig_E-set", "description": "Immunoglobulin E-set" } ], "exon_junctions": [ 551 ] }, { "node_id": 425795, "distance_to_parent": 0.308897, "left_index": 1714, "right_index": 1715, "protein_stable_id": "CDF38462", "gene_stable_id": "CHC_T00009277001", "gene_description": "Starch synthase", "sequence": "MAAPAWTDFPLRSGETHPAVLDGYPADVARRLRGRFIVQPAGMREASLIEVPIDEVGAEWDAATGDLNSRGTFESVLTIIPGLKVQNFTGVYMMGALERPSDDPNPSPFSVADREIPANILGGKSAFRNLCAEMKRLGLCPIIDGIDRVSRTRMSRKYRHLTVETLSNKGIPLRHPGTDGRENQWEDTALLNHRRVETWNLMVAEVKAMAEEYGVGGIRLDNAQSLPPIMAPNMDELLRHDPDGEPHYSLSEVFYGAVVKANEEYGYWTSSAGIERGYPNPFLVKFCREMWNAFPDFIVMAEAHFHREAQLLTSGPVVHTVRIPQILASISGKSLRKDGTVGRVPGKNRSTARTLSRLYRNDSDWLPKNAIMVNCTCTHSSPYPGLLYGRRSWIAVDLLNFLPEVPMTVYGEERGRAYRMNMNGVSNTEEMTEYDVNFDAVLPKSPPLRTGQTMPSKPKGLPPLTPPHSVERKLKMKRKGSLADLRRVPSNSNLVRSRSRDDMNGMSVRSVSAADFRKMSAMEEQTRQEIGPASGYDIAQIEGHYSHRRMLRQELAALHSGFMCVLTIEPQLKEQVFAFARYTEDQVVIVAANFKDNRDGPQYSNGCDVELDFQTLWDVLPDTFTTGAAPCAFYSVVNTFTGKEHSTDVQTLEELVFRKYKTHLDPLGISLLTFKPVQDTPERRGAHFSECINRLRSQEANDIKDARENDIIARLARGAAASASDFVGAMESLRNGLRNEGCEKAEMERIMQLCMQRASQLRFMVAYEGVPRPKDFEPPAAEHIVAYLTHMSTCAKDPDLMTLARSVVAKTTKLGPLVFLTAELGRFSTAGGLGVMVDELTKGLAGLGLEVYVVSPYYTVNRKNRSGYLGDNIQWTRNISVNIGTHIVEAGVFEGVENDVNLIFLERGDFFPKVYADPGGSVRHLQTVVLMSLGSLEVCCQKQLYPSVIVTNDWLPSMAAGYRDFFGDYFKNTSFFHLIHNLGEGAYEGRVYPNPGEGTLDHIHRLPTHVMVNPWWSTLVVNPSRCAIMRSESWGTVSPSYLRELRAGHPLSDLLQQAKSPFAYPNGIRKAEREEALRVKGAESHAAAKEILQKRYFGFQKGDPTIPLFAFVGRITSQKGVHLILNAVDELIGHTNGKIQILVGGPANYSDEYSSGCARHMVDLRRRHPWCFWAQPDEFFTDGPMCNLGADFGLMPSLFEPGGIVQQEFFVAGTPVIAYKTGGLKDTVHEWKSSQGEGNGFTFEEYSHADFVWAVKRALRVFAQPHEYEEMRVAAAETTIDVSQVAWAWSSEFHRIRNAMYTRGDVVASIISSTVDEETDLYDRSANPVLIQWTGSGNSVVLKGSFDNWTAEWPLSQAVGDHGAFGLKLLLRPGEYVCKFKVNQEWTVADDLPQKQDEAGFTNNVLQVQ", "cigar": "433D3M2D2M108D3M61D3M78D5M601D2M21D6M421D4M47D24M3D2M46D11MD33M141D7MD19M53D20M392D2M96D13M53D16M4D13M217DMD3M13D5M13D5M7D3M6D8M50D5M2D6M6D23MD10M2D32M5D2M27D10MD27MD6M31D35M28D36M17D23MD6M25DM2D4M19D18M6D4M15D2M3D8M31D10M4D4M22D25MD38M12D22MD64M7D25M2D33M18D9MD9M165D6M65D5M69DMD16M2D57M5D5M2D2M52D16M23DMD7M36D4M5DM80D9M21D8M23D2M44D12MD7MD6M33D8M8DM13DM19D2M5D4M2D7M3D12M15D11M16D16M30D4M17D4M23DM11D4M2D12M4D5M5D9M3D7M3D2M65D10MD8M10D3MD7M18D5M11D13M6D16M10D14M8D11M21DM7D6M2DM3D4M38D6M7DM6D6M3D3M23D8M4D6M2D6M132D15M9D4M26DM11D2M17DM29D6M6D12M2D8M9D2M3D12M11D5M3DM3D9M11D6M17D10M33D11M4D13M29D5M19DM7DM19D5M5D2M5D5M15DM28D4M9D4M19D14MD7MD3M18D3M30D5M4D4M2D12M7D7MD2M6D2M9D8M3D4MD2M7D11M2D3M12D5MD10M7D4M8D2M182D9M5D2MDM580DM11D2M106D3M62D2M8D3M149DM139D5M143DM171D5M351D", "taxon_id": 2769, "taxon_name": "Chondrus crispus", "assembly": "ASM35022v2", "representative": { "id": "CHC_T00009277001", "score": -100 }, "domains": [ { "id": "IPR017853", "root": 17853, "start": 67, "end": 227, "name": "Glycoside_hydrolase_SF", "description": "Glycoside hydrolase superfamily" }, { "id": "IPR017853", "root": 17853, "start": 280, "end": 328, "name": "Glycoside_hydrolase_SF", "description": "Glycoside hydrolase superfamily" }, { "id": "IPR013534", "root": 13534, "start": 818, "end": 1055, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1106, "end": 1260, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" }, { "id": "IPR014756", "root": 14756, "start": 1327, "end": 1409, "name": "Ig_E-set", "description": "Immunoglobulin E-set" } ], "exon_junctions": [ 12, 454, 1206 ] } ], "representative": { "id": "CHC_T00009277001", "score": -99.691103 } } ], "representative": { "id": "CHC_T00009277001", "score": -99.479744 } }, { "node_id": 4736897, "distance_to_parent": 0, "left_index": 2, "right_index": 1711, "taxon_id": 33090, "taxon_name": "Viridiplantae", "node_type": "duplication", "bootstrap": 89, "duplication_confidence_score": 1, "children": [ { "node_id": 4737815, "distance_to_parent": 0.200999, "left_index": 953, "right_index": 1710, "taxon_id": 33090, "taxon_name": "Viridiplantae", "node_type": "duplication", "bootstrap": 30, "duplication_confidence_score": 0.0233, "children": [ { "node_id": 426069, "distance_to_parent": 0.369362, "left_index": 1708, "right_index": 1709, "protein_stable_id": "EDO97483", "gene_stable_id": "CHLREDRAFT_153781", "gene_description": "Soluble starch synthase", "sequence": "MVFKGLVGGHERWDNKGGSNWTVAVEVAPGVGLVQALNPTYASTRELTSSLLLRLEALVAARLLTPEQGSVLRVLAWQHDMGLIKAYQEIRNNKDERQVAGVLAGRCSWLRPPGLNVVHIASEMAPVAKVGGLADVTASLAKAHQASGLLTEIILPKYDCIKYDDVKELKKMATLHVPWGPDPNRTIETYVWSGLVDGLPVYFIEPNCSERYFWRGKFYGEPDDGARFSFFSRAALEFLAQRQHEAPDIIHCHDWQAAAVGPLLKETYRASGLARTRAVLTIHNMAFQGHLNGAFLQHMGLTPRAAHVTSPDIMLDGNAPPPAPANNSGNPYGHMWLNLLKGAIVYADRITTVSPTYANEVLGEEGKGLQHMLQRHRHKLAGVLNGLDYETWNPATDPCLPAHFTSEDLSGKRACKAALLRELGLPFDGVLPGSNGHDSNGNGNDSGSPWGPNGRPLIAIVSRLTQQKGLHLMKAGLKAAVAAGAQVVVLGTAPDPKDQAEWEALAKEVGAGGDARIVLRHDEAMSHRIFAASDMLLVPSMFEPCGLTQLIALRYGTVPVVRETGGLADTVRDVAKAMPEHEKNGFTFTAKDAPAVEHALQRAINAYRDGRTWWQQELMPRIMRQDFGWTQSASTYQRIYNEAMH", "cigar": "432D4M3DM88DM56DM561DM572D2M1021DM402D4M20D6M102DM71D4M38D2MDM106D7M4D4M136DM3D9M15D6M105D3M8D16M21D4M375D8M8D5M2D18M5DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D9M33D7M9DM33D11M2D7M3D12M2DM5D4M3D7M20D16M30D4M17D4M23DM10D5M2D14M3D3M3D2MD9M3D7M3DM68D16M9D23MD8M15D13M6D16M2D4M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D34M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D6M3DM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D3M18D5M7D4M8DM6DM21D4M13D4M15DM28D3M34D5MDM15D3M51D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M1149D", "taxon_id": 3055, "taxon_name": "Chlamydomonas reinhardtii", "assembly": "v3.1", "representative": { "id": "CHLREDRAFT_153781", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 116, "end": 374, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 453, "end": 605, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 12, 47, 129, 164, 211, 260, 288, 341, 390, 497, 549, 608 ] }, { "node_id": 4737816, "distance_to_parent": 0.073968, "left_index": 954, "right_index": 1707, "taxon_id": 33090, "taxon_name": "Viridiplantae", "node_type": "duplication", "bootstrap": 2, "duplication_confidence_score": 0.9535, "children": [ { "node_id": 4738229, "distance_to_parent": 0.097805, "left_index": 1401, "right_index": 1706, "taxon_id": 33090, "taxon_name": "Viridiplantae", "node_type": "duplication", "bootstrap": 10, "duplication_confidence_score": 0.0244, "children": [ { "node_id": 425737, "distance_to_parent": 0.483406, "left_index": 1704, "right_index": 1705, "protein_stable_id": "ABO96557", "gene_stable_id": "OSTLU_41260", "gene_description": "predicted protein", "sequence": "MTPLAHDAKERDIDHRVRDQGSWWICEVEIPPGASTVEFVFSDANGFYDNNSGKDYHCPVDVENLPREHRISARIKAETERRRDAIEKCAKRAGKRAARHAEMRATALVRASEGAALMRVHTVPYQGKAGGEMTIVYRAEGGPLGDAQNIFCEGSWNRWNHGASFGPSVMQRGDTPGTLELTVNVPADAHVMDFKFLNEDVASPQTRYDSNNGADYHAPVTGGSGAAPKLNVVHIAVEMAPICKVGGMGDVVTALARATQEDGHNVEVIVPHYDCMLFDAVDGYHRAGSCVHHDVQVDVFKGWVEDVPVTLLRPKNGHFDVGCIYGRHDDHVRFGFFTEAALTWMRSKNKEVDIIHAHDWQTAPATWGNYPNAATALTLHNLQFGVDLIRRGMESCDIATTVSPTYADEVRSHHAVAPSQDKFVGIRNGIDTDIWNPSADEFLPLVYDSSNAIAGKAAAAAELCRRLGIQHPEGAPIVGVVSRLTAQKGIHLIKHACHRALERGATFVLLGSAPDPAHQHEFNALADEMKRKYPGRSCFMFKYDEPLSHLIYAGCDFLLVPSMFEPCGLTQMIAMRYGTVPVVRRTGGLRDTVFDVENDGERSAMTGVPLNGFVFDGTETPDIDYALNRALDAFYDRPRWQSLNLVERTLNLDWSWFEPAKRYEDLYWASLRHKRGR", "cigar": "432D2M728D3M193DM34DM47D5M713D2M1005D3MD43M15D13MD6M38D2M5D10MD8M173D2M171D3M44D15M74DM8D41MD15MD6M315D8MD7M7D3M8D9M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D11M15D9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M52D5M5D2M3D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218D6M335DM255DM194D3M965D", "taxon_id": 436017, "taxon_name": "Ostreococcus lucimarinus CCE9901", "assembly": "ASM9206v1", "representative": { "id": "OSTLU_41260", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 16, "end": 60, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 130, "end": 221, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 231, "end": 414, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 470, "end": 618, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ] }, { "node_id": 4738235, "distance_to_parent": 0.041628, "left_index": 1402, "right_index": 1703, "taxon_id": 33090, "taxon_name": "Viridiplantae", "node_type": "speciation", "bootstrap": 2, "children": [ { "node_id": 4738238, "distance_to_parent": 0.330923, "left_index": 1417, "right_index": 1702, "taxon_id": 58023, "taxon_name": "Tracheophyta", "node_type": "speciation", "bootstrap": 95, "children": [ { "node_id": 425867, "distance_to_parent": 0.160198, "left_index": 1700, "right_index": 1701, "protein_stable_id": "EFJ17036", "gene_stable_id": "SELMODRAFT_154776", "gene_description": "Starch synthase", "sequence": "MSKIFYYPQKVEAGAEVEIYFNRSITVLASEDSVQIMGSFNGWRWQPFTLKLEKSELGGDWWACKVDVPKEAYRMDFVFFNGNVYENNDTKDFFVLVDDGSMDQREFENFLVLEKRKEAERLAQEQAEKDRAAAEARKLAEQRAAEEADRDEAKRIVAERRERARMVLQKALPSVPGLWDAEPTSFKAGETVKLFYNRSSRSLARSTELWIHGGYNNWQDAVSVVEKLVPSSSRSGDWCSVEVSVPKAAFMLNWVFADGPPEKASTYDNNDYQDFHMAVPEPVAEELYWADVEEQVYSEIRKQRQEREEAARKKKLYKAQKKEEMKQKTKQTFLQSQSHVYYTDPMEVNAGEPVSVLYNPQNTVLSGKPEVWLRHSFNRWTHQLSPFPPVRMKEVPSTTHLKATVEVPVDAYIMDCVFSERGDDNGGTYDNRGGFDYHIPVHGGIGKEPPMSIVHISVEMAPIAKVGGLGDVVTSLSRAVQELGHNVEIILPKYDCLKYNHVEELQEKESFGWGGTTIRVWNGKVEGLNVHFIEPQNGFFWAGCIYGRRDDGHRFGFFCNAALEFLLRSGRRPDVIHCHDWSTAPVAWLFQESYKHYALSNARIVFTIHNLEFGIAQVGKAMANANMATTVSHSYAQEVSGSPAIAPHRGKFHGIRNGIDLDIWDPFDDPYIPVSYTAEQVVEGKRAAKSELQHRLGLQQVDKPLVGIITRLTAQKGIHLIKHAIWRTLERGGQVVLLGSAPDPRVQNDFVNLSHQLKNSHNDMARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGAIPVVRKTGGLNDTVFDVDHDKDRAQSQGLEPNGFSFEGTDAAGVDYALNRALSAWYDARDWFHSLCQKVMEQDWSWNRPALDYVELYYLAKK", "cigar": "432D2M2664D20MD5MD8M5D12M11D8MD27MD28M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7D2M9D9M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM815D", "taxon_id": 88036, "taxon_name": "Selaginella moellendorffii", "assembly": "v1.0", "representative": { "id": "SELMODRAFT_154776", "score": -100 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 14, "end": 98, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR014756", "root": 14756, "start": 32, "end": 95, "name": "Ig_E-set", "description": "Immunoglobulin E-set" }, { "id": "IPR005085", "root": 5085, "start": 189, "end": 280, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 351, "end": 442, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 453, "end": 639, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 701, "end": 849, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 243, 314, 405, 465, 501, 538, 573, 630, 673, 734, 778, 816, 857 ] }, { "node_id": 4738243, "distance_to_parent": 0.241935, "left_index": 1418, "right_index": 1699, "taxon_id": 3398, "taxon_name": "Magnoliophyta", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4738499, "distance_to_parent": 0.028767, "left_index": 1613, "right_index": 1698, "taxon_id": 3398, "taxon_name": "Magnoliophyta", "node_type": "speciation", "bootstrap": 5, "children": [ { "node_id": 425717, "distance_to_parent": 0.179859, "left_index": 1696, "right_index": 1697, "protein_stable_id": "ERN17366", "gene_stable_id": "AMTR_s00037p00164200", "gene_description": "starch synthase 3", "sequence": "MSATPTAMELQRTFLGRETSEAQNYSRRRQRKSPTSKSKGPTHPASKGFYRGPMPLSQAKTSGQKKVQIVKEEEEDPDISNSSENVDSLEEMVQASCESNSYLGHNKRTHEIKENGSETLGTESVVMDGEKTRLVTNSKDVEDVEEIGGEIGSRGKQVDTKLDSEQIIGRGDKGGDEKPGMGGASEETNLRAQEMAHKRLLADLADENRLNGNKVFTYPKVAKSNQDIEVFLDRSMTSLGNESNLYIMGAFNDWRWKSFTKELSKMDFPGDWWSCRVHIPKEAYKMDFVFLNGRDIYENNNSKDFEVPVEGGMDTFAFEDFLLEERRRELEKLAAEQAAKERKAAEQRRLEEEKAANDEDKAQAKIEVEKRREKINHIKHKAVLSVDNLWSMEPFEFKGGDKVRLYYNCASRPVAHSKEVWIHGGYNNWQGGISIVEILSTAGIEDGDWWYAYVIVPDGALLLDWVFADGPPGSAGVYDNNDFQDFHAIVPRATPEGLYWAEEEHRIYRELQQERKLREDAKRAKAERTAVMKTETKEKTRKIFLLSQRNIVCTEPLDVQAGRPVTVFYNPSNTVLSGKPEVWFKCSFNRWAHRLGPLPPQKMIAVDGGSHVKATVKVPLDAYMMDFVFCEREDGGAYDNKNGMDYHIPVVGGVMKEPPMHVVHVAVEMAPIAKVGGLGDVVTSLSRAVQDLGHAVDIILPKYDCLNLSKVKDFRFHSEYSWGGCQIKVWFGKVESLSVYFIEPQNGMFWAGCIYGCRTDGDRFAFFCHAALEFLVQSDFQPDIVHCHDWSSAPVSWLIKDNYKHYGLSNARVVFTIHNLEFGTNLISKAMAYADKATTVSFTYSKEVSMNPAIAPHLHKFHGILNGIDPDIWDPFNDPFIPMSYTSDNVVEGKRAAKDALQQLLGLKKSDHPLVGIITRLTVQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQGEFSDLANQLHNIHGDRARLCLTYDEPLSHLIYAGADFTLVPSLFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDKQRAQVQGLEPNGFNFDGADFAGVDYALNRSVNLIEWYSYVTA", "cigar": "193DM237D8M89DMDM611D4MDM69D2M54D4M81DM34DM47D5M156D3M2DM8D2M54D7M5D4MDM30D2M8D3M14D8M4DM51D9M27D14M14D8M2DM7D4M167D3M2D5M67D10M280D5M141D7M55D14M72D6M24D5M172D10MD8MD15M3D2M13D5M16D2M7D5M3D8M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M2D2M7D2M22D2M408DM340DM255DM195DM966D", "taxon_id": 13333, "taxon_name": "Amborella trichopoda", "assembly": "AMTR1.0", "representative": { "id": "AMTR_s00037p00164200", "score": -100 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 225, "end": 310, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 400, "end": 491, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 562, "end": 651, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 661, "end": 850, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 24, 454, 525, 616, 674, 710, 747, 782, 839, 882, 943, 987, 1025 ] }, { "node_id": 4738504, "distance_to_parent": 0.044621, "left_index": 1614, "right_index": 1695, "taxon_id": 1437201, "taxon_name": "Pentapetalae", "node_type": "speciation", "bootstrap": 10, "children": [ { "node_id": 426008, "distance_to_parent": 0.144512, "left_index": 1693, "right_index": 1694, "protein_stable_id": "KMT04170", "gene_stable_id": "BVRB_8g186180", "gene_description": "hypothetical protein", "sequence": "MEISLQSQRPVWCRESIRQNAHLNFRPFTGFFPRKSFRRSSQSYSWHLEYPSNGIFRPYSAAGDSSKKKQKRWSASRSKGSAPKGFVPKAPVGTSSPKREQRNEEDSENSFTSSEPDRRVSDVGSSGAEEREILEVSQVDRIEEQKEDATNGKVGNPSPVNIAVAVASKNLLKEVENVKGFIGERKTSAGAVIDETRLEAENLEADQGNATESKVFVSERMNSGTLISDVEEKDELKTSQENIETDNYQTEIQALGLDRGGSDIAQEELSSENKQTNEKGYRADTKILVPEKRVSDITPYAKKWKDIVVVKENLPLSVTDTKELGSIPGDEKGTVDIDSKKSDDGNVPETEVLGSDTKDAIAIAEKELEESLRKLKLERDALLRKQVIEEMAEDNFSKGHKIFIYPGTAKPDQDIELFLNRSLSTLNNEPDVMVMGAFNDWRWKSFTTKLQKTQFKGDWWSCQIHVPREAYKIEFIFFNGKDVYENNGKKDFHIIVEGGMDVDTFEDFLLEEKHREQEKLAKIEAERERQAEEQRQREEARAASEADRAQAKTEVEKRREKLRELMSRASSSLDNVCFFQPCEFKDGDLVRLYYNKSAGPLAHANDVWIHGGHNNWSYGLSVVARLVKSEEKGADWWYTEVTVPDQAVILDWVFADGPPQKASIYDNNKRHDFHALVPMSIPEEVYWVEEELRIYQKLQEERRLREEAIRAKVERTARMKAETKEKTLKTFLLSQRHIVYTDPVDVQAGQDVNVYYNPSNTVLHGKPEVWFRCSFNRWTHRRGPLPPQKMFPADNGSHVETTVKVPLDAYMMDFVFSEWEDGGIFDNKNGIDYHVPVFGGIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHHVDVVFPKYDCLNLTHVKDFHYKKSYSWGGTEIKVWFGKVEGLSVHFLEPLNGLFRTGSVYIGKNDGERFGFFCHAALEYLLQSGFHPDIIHCHDWSSAPVAWLYKEHYGQYGLTNARVVFTIHNLEFGAYFIGRAMAYADKATTVSNTYAKEVAGNSAIAPHLYKFHGILNGIDPDIWDPFNDNFIPVSYTSENVVEGKRAAKETLQQRLTIKKGDFPLVGIITRLTHQKGIHLIKHAIWRTIERGGQVVLLGSAPDPRIQQEFVDLANQLHNMHHDRARLCLTYDEPLSHLIYAGADLILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDVERAKAQGLEPNGFNFEGADSAGVDYALNRAISAWYDAKEWFDALRERVMEQDWSWNRPALEYMELYHAARK", "cigar": "193DM237D3M94DMDM79D5M18D2M52D8M175DM268D7MDM10D2M2D3MD6M45D2M54D4MD2M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M27D39M7D4M165D5M2D16M25D7M23D14MD6M30D6M30D3M200D6M141D13M49D25MD14M41D12M11DMD5M3D15M25D35MD4M29D21M46D13MD8MD3M15D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM815D", "taxon_id": 3555, "taxon_name": "Beta vulgaris subsp. vulgaris", "assembly": "RefBeet-1.2.2", "representative": { "id": "BVRB_8g186180", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 412, "end": 497, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 587, "end": 678, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 749, "end": 838, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 848, "end": 1038, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1095, "end": 1217, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 42, 64, 641, 712, 803, 861, 897, 934, 969, 1026, 1069, 1130, 1174, 1212, 1253 ] }, { "node_id": 4738516, "distance_to_parent": 0.034783, "left_index": 1615, "right_index": 1692, "taxon_id": 1437201, "taxon_name": "Pentapetalae", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 425816, "distance_to_parent": 0.144519, "left_index": 1690, "right_index": 1691, "protein_stable_id": "Solyc02g080570.2.1", "gene_stable_id": "Solyc02g080570.2", "sequence": "MDVPLPLHRPLSCTSVSNAITHLKIKPFLGFVSHGTTSLSVQSSSWRRDVMVTGVPFPFCANFSGRRRRKVSTPRSQQSSPKGFVPRKPSGMSTQRKVQKSNGDKESQSTSTSKESEISNQKTVEAKVETSDDDTKGVVRDHKFLEDEDEINGSTKSISMSPGRGSSQFVESEEIGDDDNDAVKLNESKRLEESDFLIDSVIREQSGSQGETNDSSKGSHAVGTKFYEILQVDVEPQQLKEINAGSVEYTGPVASKLLEITKASDVQHTESNEIDYLDSNSFFKSDLVEEDDPLTAGTVETGDSSLNLRLEIEANLRRQAIERLAEENLLQGIRLFCFPEVVKPDEDVEIFLNRGLSTLKNEPDVLIMGAFNEWRYRSFTTRLTETHLNGDWWSCTIHVPKEAYRADFVFFNGQDVYDNNDGNDFSITVEGGMQIIDFENFLLEEKRREQEKLAKEQAERERLAEEQRRIEAEKAEIEADRAQAKDETAKKKKVLQELMAKATKTRDITWYIEPSEFKCEDKVRLYYNKSSGPLSHAKDLWIHGGYNNWKDGLSIVKKLVKSERIDGDWWYTEVVIPDQALVLDWVFADGPPKHAIAYDNNHRQDFHAIVPKQIPEELYWVEEEHQIFKKLQEERRLREAAMRAKAEKTALLKAETKERTMKSFLLSQKHVVYTEPLDIQAGSSVTVYYNPANTVLSGKPEIWFRCSFNRWTHRLGPLPPQKMLPAENGTHVKATVKVPLDAYMMDFVFSEREDGGIFDNKSGMDYHIPVFGGVAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLKMNNVKDFRFHKSYFWGGTEIKVWFGKVEGLSVYFLEPQNGLFWKGCVYGCSNDGERFGFFCHAALEFLLQGGFSPDIIHCHDWSSAPVAWLFKEQYTHYGLSKSRIVFTIHNLEFGADLIGRAMTHADKATTVSPTYSQEVSGNPVIAPHLHKFHGIVNGIDPDIWDPLNDKFIPIPYTSENVVEGKTAAKEALQQKLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSTYNDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQQCGLGPNGFSFDGADAAGVDYALNRALSAWYDGRDWFNSLCKQVMEQDWSWNRPALDYLELYHAARKLT", "cigar": "193DM237D3M94DMDM79D5M18D2M52D8M175DM268D7MDM10D2M2D3MD6M45D2M54D4MD2M30D7M24D3M10DM3DM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M27D14M14D11M7D5M164D5M2D5M71D7M5D4M30D6M71D3MD11M126D7M9D11M141D13M2D3M42D25M58D12M11D3M6D9M51D16M36D17M49D12MD8MD3M15D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM462D2M351D", "taxon_id": 4081, "taxon_name": "Solanum lycopersicum", "assembly": "SL2.50", "representative": { "id": "Solyc02g080570.2", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 345, "end": 430, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 520, "end": 611, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 682, "end": 771, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 781, "end": 969, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1028, "end": 1152, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 42, 62, 574, 645, 736, 794, 830, 867, 902, 959, 1002, 1063, 1107, 1145, 1186 ] }, { "node_id": 4738518, "distance_to_parent": 0.013078, "left_index": 1616, "right_index": 1689, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "dubious", "bootstrap": 0, "duplication_confidence_score": 0, "children": [ { "node_id": 4738556, "distance_to_parent": 0.169147, "left_index": 1651, "right_index": 1688, "taxon_id": 3700, "taxon_name": "Brassicaceae", "node_type": "speciation", "bootstrap": 98, "children": [ { "node_id": 4738591, "distance_to_parent": 0.026364, "left_index": 1682, "right_index": 1687, "taxon_id": 3701, "taxon_name": "Arabidopsis", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 426035, "distance_to_parent": 0.020023, "left_index": 1685, "right_index": 1686, "protein_stable_id": "AT1G11720.2", "gene_stable_id": "AT1G11720", "gene_display_label": "SS3", "gene_description": "Starch synthase 3, chloroplastic/amyloplastic", "sequence": "MEVCWQIQRPASLRPGFQEKGRVKINTFSVGFFPRSISSIASLESQYKSNGFLHQITASADFSRKKQGRMAASGPKSSGPRGFGRRTTVGSAQKRTQKKNGEKDSNATSTATNEVSGISKLPAAKVDVQKQSSVVLNERNVLDRSDIEDGSDRLDKKTTDDDDLLEQKLKLERENLRRKEIETLAAENLARGDRMFVYPVIVKPDEDIEVFLNRNLSTLNNEPDVLIMGAFNEWRWKSFTRRLEKTWIHEDWLSCLLHIPKEAYKMDFVFFNGQSVYDNNDSKDFCVEIKGGMDKVDFENFLLEEKLREQEKLAKEEAERERQKEEKRRIEAQKAAIEADRAQAKAETQKRRELLQPAIKKAVVSAENVWYIEPSDFKAEDTVKLYYNKRSGPLTNSKELWLHGGFNNWVDGLSIVVKLVNAELKDVDPKSGNWWFAEVVVPGGALVIDWVFADGPPKGAFLYDNNGYQDFHALVPQKLPEELYWLEEENMIFRKLQEDRRLKEEVMRAKMEKTARLKAETKERTLKKFLLSQKDVVYTEPLEIQAGNPVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMEATDDESSHVKTTAKVPLDAYMMDFVFSEKEDGGIFDNKNGLDYHLPVVGGISKEPPLHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHNVDIVFPKYDCIKHNFVKDLQFNRSYHWGGTEIKVWHGKVEGLSVYFLDPQNGLFQRGCVYGCADDAGRFGFFCHAALEFLLQGGFHPDILHCHDWSSAPVSWLFKDHYTQYGLIKTRIVFTIHNLEFGANAIGKAMTFADKATTVSPTYAKEVAGNSVISAHLYKFHGIINGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEELQNRLGLKSADFPVVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGAVPVVRKTGGLFDTVFDVDHDKERAQAQVLEPNGFSFDGADAPGVDYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYLELYHSARK", "cigar": "193DM237D3M94DMDM79D5M18D2M52D8M175DM268D9M10D2M2D3M4D3M46DM54D4MD2M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M56D9M27D14M14D11M7D4M167D3M2D3M74D5M6D4M30D6M735D10MD8MD4M14D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D11M7DM38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D64M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM815D", "taxon_id": 3702, "taxon_name": "Arabidopsis thaliana", "assembly": "TAIR10", "representative": { "id": "AT1G11720", "score": -175 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 205, "end": 290, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 380, "end": 476, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 547, "end": 637, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 647, "end": 836, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 39, 61, 439, 510, 602, 660, 696, 733, 768, 825, 868, 929, 973, 1011, 1052 ] }, { "node_id": 425993, "distance_to_parent": 0.017737, "left_index": 1683, "right_index": 1684, "protein_stable_id": "fgenesh1_pm.C_scaffold_1000980", "gene_stable_id": "fgenesh1_pm.C_scaffold_1000980", "gene_display_label": "SS3", "gene_description": "Putative uncharacterized protein", "sequence": "MAASGPKSSGPRGFGRQPTVGSAQKRTQKKNGEKDSNATSTATNEVSGVTKLPEAKADVQKQGSVVFNERNVLDKSDIEDDALLERKLKLERENLRRKEIEALAAEHLARGDRMFVYPVIVKPDEDIEVFLNRNLSTLKNEPDVLIMGAFNEWRWKSFTRRLEKTWIHGNWLSCLLHIPKEAYKMDFVFFNGQSVYDNNDSKDFCVEIKGGMDKVDFENFLLKEKLREQEKLAKEEAERERQKEEKRRIEAQKAAIEADRAQAKAETQKRRELLQPAIKKAVISAENVWYIEPSDFKAEDTVKLYYNKRSGPLANSKELWLHGGFNNWVDGLSIVVKLVDAELKDDDPKSGNDDSKSGNWWFAEVVVPAGALVIDWVFADGPPKGAVLYDNNFYQDFHALVPRKTPEELYWLEEENMIFRKLQEERRLKEEVMRAKMEKTARLKAETKERTLKKFLLSQKDVVYTEPVEIQAGNPVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMEAADDGSSHMKTTAKVPLDAYMMDFVFSEKEDGGIFDNKNGLDYHLPVVGGISKEPPLHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHNVDIIFPKYDCLKHNFVKDLQFNRSYHWGGTEIKVWHGKVEGLSVYFLDPQNGLFQRGCVYGCADDAGRFGFFCHAALEFLLQGGFHPDILHCHDWSSAPVSWLFKDQYTNYGLIKTRVVFTIHNLEFGANAIGKAMKFADKATTVSPTYAKEVAGNSVISPHLYKFHGIINGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEELQNRLGLKSADLPVVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGAVPVVRKTGGLFDTVFDVDHDKERAQAQVLEPNGFSFDGADAPGVDYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYLELYHSARK", "cigar": "193DM1422D2M54D5M8D3MDM30D2M26D7M56D9M27D14M14D11M7D4M167D3M2D3M74D5M6D4M30D4M748D8MD4M14D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D19M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D64M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM815D", "taxon_id": 81972, "taxon_name": "Arabidopsis lyrata subsp. lyrata", "assembly": "v.1.0", "representative": { "id": "fgenesh1_pm.C_scaffold_1000980", "score": -50 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 124, "end": 209, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 299, "end": 402, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 473, "end": 563, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 573, "end": 762, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 365, 436, 528, 586, 622, 659, 694, 751, 794, 855, 899, 937, 978 ] } ], "representative": { "id": "AT1G11720", "score": -174.979977 } }, { "node_id": 4738558, "distance_to_parent": 0.026317, "left_index": 1652, "right_index": 1681, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "duplication", "bootstrap": 98, "duplication_confidence_score": 1, "children": [ { "node_id": 4738579, "distance_to_parent": 0.041194, "left_index": 1667, "right_index": 1680, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 425804, "distance_to_parent": 0, "left_index": 1678, "right_index": 1679, "protein_stable_id": "Bra019836.1-P", "gene_stable_id": "Bra019836", "gene_description": "AT1G11720 (E=4e-153) ATSS3 | ATSS3 (starch synthase 3); starch synthase/ transferase, transferring glycosyl groups ", "sequence": "MCPRNIIVSTVIVPVRALVIDWVFADGPPEGAFLYDNNSRQDFHALVPLTTPEEVYWSEEEDLMFRKLQEERRLKEEAMRVKMEKTGRLKAETKERTLKKFLLSQKDVVYTEPLEIQAGSSVTVLYNPSNTVLKGKPEVWFRGSFNRWTHRLGPLPPQKMEAADDGSSHLKTSAKVPLDAYMMDFVFSEKEDGGVFDNKDGLDYHLPVVGGIAKEPPLHIVHIAVEMAPIAKVSRTYAKEVAGNSVISPHLYKFHGIVNGIDPDIWDPYNDNFIPVPYTSENVLEGKRAAKEELQKRLGLKSSDLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSTHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSVPIVRKTGGLYDTVFDVDHDKERAQAQVLEPNGFSFDGADAPGVDYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYIELYHSARK", "cigar": "432D2M1240D2M1441DMD5M464D40MD9M3D11M6D8M15D6M18D22M65D3M8D64M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM745D11M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM815D", "taxon_id": 51351, "taxon_name": "Brassica rapa subsp. pekinensis", "assembly": "IVFCAASv1", "representative": { "id": "Bra019836", "score": -100 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 119, "end": 209, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR001296", "root": 1296, "start": 301, "end": 424, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 11, 82, 174, 232, 275, 336, 380, 418, 459 ] }, { "node_id": 4738582, "distance_to_parent": 0, "left_index": 1668, "right_index": 1677, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "duplication", "bootstrap": 0, "duplication_confidence_score": 0.5, "children": [ { "node_id": 425810, "distance_to_parent": 0.004905, "left_index": 1675, "right_index": 1676, "protein_stable_id": "CDX97980", "gene_stable_id": "GSBRNA2T00105335001", "gene_display_label": "BnaA06g07310D", "sequence": "MEMCWQIQRPASLRLVLHQKGRLKINTCIGFLHPHPKSYSFSSLASLESQYSSNGFLHQITATTDFSRKKQGRMSASGPKSSAPTGFGRRTSAQKKNVEKDSNATSTVTNEVLRISNLPEAKAIVENQSSEVFGERNVLDRSETEDGSNQVDNKITEDDALLQVKIKAERENLRRKEIEALAEETLLRGDRMFVYPLTAKPDEDIEVFLNITLSTLNKEPDVLIMGAFNDWRWKSFTRILEKTWINGDWLSCLVHIPKEAYKIDFVFFNGQSVYDNNNSKDFIIDIKNGMDKVEFENFLLEEKWREQEKLAKEEAEREREEEEKRRIEARKAAIEADRAQAKAETQRRREMLQQALEKAVVSARNVWYIEPSNFKGGDRVKLYYNKSSGPLANAKEIWTHGGFNNWVDGLSIAEKLVDAELEDDSKSGDWWFAEVIVPVRALVIDWVFADGPPEGAFLYDNNSRQDFHALVPLTTPEEVYWSEEEDLMFRKLQEERRLKEEAMRVKMEKTGRLKAETKERTLKKFLLSQKDVVYTEPLEIQAGSSVTVLYNPSNTVLKGKPEVWFRGSFNRWTHRLGPLPPQKMEAADDGSSHLKTSAKVPLDAYMMDFVFSEKEDGGVFDNKDGLDYHLPVVGGIAKEPPLHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHNVDIIFPNYDCIKYNFVKDLQFNRSYHWGGTEIKVWHGKVEGVSVYFLDPQNGLFQRGCVYGCADDAGRFGFFCHAALEFLLQGGFHPDILHCHDWSSAPVSWLFKDHYTHYGLVKTRVVFTIHNLEFGAGAIGKAMKFSDKATTVSRTYAKEVAGNSVISPHLYKFHGIVNGIDPDIWDPYNDNFIPVPYTSENVLEGKRAAKEELQKRLGLKSSDLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQQVVLLGSAPDPRIQNDFVNLANQLHSTHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSVPIVRKTGGLYDTVFDVDHDKERAQAQVLEPNGFSFDGADAPGVDYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYIELYHSARK", "cigar": "193DM237D3M94DMDM79D5M18D2M52D8M175DM268D6MD2M10D3MD10M46DM54D4MD2M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D4M59D3M4D2M27D14M14D11M7D4M167D3M2D3M74D5M6D4M30D6M735D10MD8MD4M14D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D8M8D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D64M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D4M26DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM815D", "taxon_id": 3708, "taxon_name": "Brassica napus", "assembly": "AST_PRJEB5043_v1", "representative": { "id": "GSBRNA2T00105335001", "score": -50 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 202, "end": 287, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 377, "end": 472, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 543, "end": 633, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 643, "end": 832, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 890, "end": 1014, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 43, 65, 435, 506, 598, 656, 692, 729, 764, 821, 864, 925, 970, 1008, 1049 ] }, { "node_id": 4738585, "distance_to_parent": 0.022055, "left_index": 1669, "right_index": 1674, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425969, "distance_to_parent": 0.008896, "left_index": 1672, "right_index": 1673, "protein_stable_id": "CDY49799", "gene_stable_id": "GSBRNA2T00093825001", "gene_display_label": "BnaCnng18120D", "sequence": "MEMCWQIQRPASLRLVFHQKGPLKINTCIGFLHPHPKSYSFSSLASLESQYNSNGFLHQITASADFSRKKQGRMAASGPKSSSPRGLGRRTTVGSAQKKTPKKNGEKDSNATSTVTNEVLEISKLPGAKADVEKQSSVVFGERNVLDRSETEVDALLELKLKAERENLRRKEIEALAEETLARGDRMFVYPLTAKPDEDIEVFLNITLSTLNKEPDVLIMGAFNDWRWKSFTRRLEKTWINGDWLSCLLHIPKEAYKIDFVFFNGQSVYDNNDSKDFCIDVKNGMDKVEFENFLLEEKWREQEKLAKEEAERERQEEEKRRIEARKAAIEADREQAKAETQKRREMLHQALEKAVVSARNVWYIEPKNFKGEDKVKLYYNKRSGPLANAKEIWIHGGFNSWVDGLSIVEKLVDAELKDDSKNGDWWFAEVIVPVRALVIDWVFADGPPEGAFLYDNNSRKDFHALVPLTTPEEAYWSEEEDRMFRKLQEERRLKEEAMRVKMEKTARLKAETKERTLKMFLLSQKDVVYTEPLEIQAGSPVTVLYNPSNTVLNGKPEVWFRGSFNRWTHRLGPLPQKMEAADDGSSHLKTSAKVPLDAYMMDFVFSEKEDGGMFDNKDGLDYHLPVVGGIAKEPPLHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELSHNVDIIFPKYDCIKYNFVKDLQFNRSYHWGGTEIKVWHGKVEGVSVYFLDPQNGLFQRGCVYGCADDAGRFGFFCHAALEFLLQGGFHPDILHCHDWSSAPVSWLFKDHYTHYGLIKTRVVFTIHNLEFGAGAIGKAMTFADKATTVSRTYAKEVAGNSVISPHLYKFHGIVNGIDPDIWDPYNDNFIPVPYTSENVLEGKRAAKEELQKRLGLKSADLPLVGIITRLTHQKGIHLIKHAIRRTLERNGQQVVLLGSAPDPRIQNDFVNLANQLHSTHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSVPVVRKTGGLYDTVFDVDHDKERAQAQVLEPNGFSFDGADAPGVDYALNRAISAWYDGREWFNSLCKTLMEQDWSWNRPALEYIELYHSARK", "cigar": "193DM237D3M94DMDM79D5M18D2M52D8M175DM268D6MD2M10D3MD10M46DM54D4MD2M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M56D9M27D14M14D11M7D4M167D3M2D3M74D5M6D4M30D3M747DMD8MD4M14D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D8M8D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D46MD17M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D4M26DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM815D", "taxon_id": 3708, "taxon_name": "Brassica napus", "assembly": "AST_PRJEB5043_v1", "representative": { "id": "GSBRNA2T00093825001", "score": -50 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 197, "end": 282, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 372, "end": 467, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 538, "end": 627, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 637, "end": 826, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 885, "end": 1008, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 43, 65, 430, 501, 592, 650, 686, 723, 758, 815, 858, 919, 964, 1002, 1043 ] }, { "node_id": 425983, "distance_to_parent": 0.006895, "left_index": 1670, "right_index": 1671, "protein_stable_id": "Bo5g014950.1", "gene_stable_id": "Bo5g014950", "sequence": "MEMCWQIQRPASLRLVFHQKGPLKINTCIGFLHPHPKSYSFSSLASLESQYNSNGFLHQITASADFSRKKQGRMAASGPKSSSPRGLGRRTTVGSAQKKTPKKNGEKDSNATSAVTNEVLEISKLPDAKADVQKRGSTVLGERNVLDRSETEVDALLKKELKVERENLRRKEIEALAEETLARGDRMFVYPLTAKPDEDIEVFLNITLSTLNKEPDVLIMGAFNDWRWKSFTRRLEKTWINGDWLSCLLHIPKEAYKIDFVFFNGQSVYDNNDSKDFCIDVKNGMDKVEFENFLLEEKWREQEKLAKEEAERERQEEEKRRIEARKAAIEADREQAKAETQKRREMLQQALEKAVVSARNVWYIEPKNFKGEDKVKLYYNKSSGPLANAKEIWIHGGFNSWVDGLSIVEKLVDAELKDDSKNGDWWFAEVIVPVRALVIDWVFADGPPEGAFLYDNNSRKDFHALVPLTTPEEAYWSEEEDRMFRKLEEERRLKEEAMRVKMEKTARLKAETKERTLKMFLLSQKDVVYTEPLEIQAGSPVTVLYNPSNTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMEAADDGSSHLKTSTKVPLDAYMMDFVFSEKEDGGMFDNKDGLDYHLPVVGGIAKEPPLHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELSHNVDIIFPKYDCIKYNFVKDLQFNRSYHWGGTEIKVWHGKVEGVSVYFLDPQNRLFQRGCVYGCADDAGRFGFFCHAALEFLLQGGFHPDILHCHDWSSAPVSWLFKDHYTHYGLIKTRVVFTIHNLEFGAGAIGKAMTFADKATTVSRTYAKEVAGNSVISPHLYKFHGIVNGIDPDIWDPYNDNFLPVPYTSENVLEGKRAAKEELQKRLGLKSADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSTHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSVPVVRKTGGLYDTVFDVDHDKERAQAQVLEPNGFSFDGADAPGVDYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYIELYHSARKGGGSFGDHYFTPRNVVSRNSVFFFCIASFCLGMLFSNRMWNVPEGRGISTLSKLSLKSGDSVQSKNNVLEYGNNTIGILDKSIASLEMKLVAARAERESLSGKFSMSEEAKKRKYFMVIGINTAFSSRKRRDSVRSTWMPQGEKLKKLEEEKGIIVRFVIGHSTLSLGVLEKAIEAEEKTYGDFLRLEHREGYMALSAKTKTFFATAVSLWDAEFYIKVDDDVHVNLATLKTTLSSHRNKPRAYIGCMKSGPVLAIKGVKYHEPEYWKFGEVGNRYFRHATGQFYAISKDLATYILINQDLLHKYANEDVSLGSWFIGLDVEHVNDRRLCCSTSPRDCQLKAMMGDVCAASFDWKCSGICQSAERMADVHERCGEPETALWTSSS", "cigar": "193DM237D3M94DMDM79D5M18D2M52D8M175DM268D6MD2M10D3MD10M46DM54D4MD2M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M56D9M27D14M14D11M7D4M167D3M2D3M74D5M6D4M30D3M747DMD8MD4M14D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D8M8D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D64M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149D8M12D56M62DM4D2MD143M16D14M2DM3D145M36D2M72D8M120D4M102D2M", "taxon_id": 109376, "taxon_name": "Brassica oleracea var. oleracea", "assembly": "v2.1", "representative": { "id": "Bo5g014950", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 197, "end": 282, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 372, "end": 467, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 538, "end": 628, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 638, "end": 827, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR025298", "root": 25298, "start": 1102, "end": 1181, "name": "DUF4094", "description": "Domain of unknown function DUF4094" } ], "exon_junctions": [ 43, 65, 430, 501, 593, 651, 687, 724, 759, 816, 859, 920, 964, 1002, 1043, 1085, 1123, 1152, 1162, 1227, 1248, 1272, 1313, 1342, 1384, 1422 ] } ], "representative": { "id": "GSBRNA2T00093825001", "score": -49.991104 } } ], "representative": { "id": "GSBRNA2T00105335001", "score": -49.995095 } } ], "representative": { "id": "Bra019836", "score": -100 } }, { "node_id": 4738562, "distance_to_parent": 0.028938, "left_index": 1653, "right_index": 1666, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "duplication", "bootstrap": 87, "duplication_confidence_score": 0.3333, "children": [ { "node_id": 4738564, "distance_to_parent": 0.022927, "left_index": 1660, "right_index": 1665, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "speciation", "bootstrap": 99, "children": [ { "node_id": 426026, "distance_to_parent": 0.000905, "left_index": 1663, "right_index": 1664, "protein_stable_id": "CDY31209", "gene_stable_id": "GSBRNA2T00047339001", "gene_display_label": "BnaC08g15040D", "sequence": "MEVCWQIQTPTSLGPGFQQKGRLKINTFIGFLPRPISSLASLESQYNSNGFLHQITATADFSRKKQGRMSASGPKSSAPRGFGRRTTVGSAQKRTQKKNDEKDSNATSTVTNDGLGVSKLPEAKANVQKQGSPVIGESIVLEDEALVEQKLKAERESLRKKEIESLAEEALARGDRMFVYPLVAKPDEDIKVFLNKTLSTLSSEPDVLIMGAFNDWRWKSFTRRLEKTKELHGDWLSCLLHIPKEAYKMDFVFFNGQSVYDNNDSKDFCVDVKGGMDKVEFENFLLEEKWREQEKLAKEEAERKRQEEEKRRNEARKAAIEADREQAKVETQKRREMMLQPALQKAVVSSESVWYIEPKDFKGGDKVKIYYNKSSGPLAYAKEVWIHGGFNNWIDGLSIIEKLKADSKSEDWWFAEVIVPVNALVIDWVFADGPPKEAFLYDNNSHQDFHELVPLRTPEELYWSEEESLMFRKLQEERRLKEEAMRVKMETTARLKAETKERTLKKFLLSQKDVVYTEPLEIQAGRSVTVFYNPSNTVLNGKPEIWFRGSFNRWTHRLGPLPPQKMEAADDGSSHMKTSAKVPLDAYMMDFVFSEKEDGGVFDNRYGLDYHLPVVGGIAKEPPLHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHNVDIIFPKYDCIKYNLVKDLQFNRSYHWGDTEIKVWHGKVEGVSVYFLDPQNGLFQRGCVYGCADDAGRFGFFCHAALEFLLKGGFHPDILHCHDWSSAPVSWLFKDHYTHYGLIKTRVVFTIHNLEFGASAIGKAMTFSDKATTVSRTYAKEVAGNSVISPHLYKFHGIVNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEELQNRLGLKRADLPLVGIITRLTHQKGIHLIKHAIRRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSTHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGAVPVVRKTGGLYDTVFDVDHDKERAQAQVLEPNGFSFDGADAPGVDYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYIELYHSARK", "cigar": "193DM237D3M94DMDM79D5M18D2M52D8M175DM268D6MD2M10D2M2D3M4D3M46DM54D4MD2M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M56D9M27D14M14D11M7D4M167D3M2D3M74D4M788D4MD8MD4M14D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D52MD12M2D13MD6M38D17MD8M38D4M7D23M8D2MD11MD4MD7M66D4MD19M9D3M8D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D64M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM815D", "taxon_id": 3708, "taxon_name": "Brassica napus", "assembly": "AST_PRJEB5043_v1", "representative": { "id": "GSBRNA2T00047339001", "score": -50 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 187, "end": 273, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 364, "end": 454, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 525, "end": 615, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 625, "end": 814, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 873, "end": 995, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 38, 60, 417, 488, 638, 674, 711, 746, 803, 846, 907, 951, 989, 1030 ] }, { "node_id": 425960, "distance_to_parent": 0, "left_index": 1661, "right_index": 1662, "protein_stable_id": "Bo8g061350.1", "gene_stable_id": "Bo8g061350", "sequence": "SVIEKRLGERQWRGCFNNKHSLSSQQTVSSFLFPSLSSLLWAAMEVCWQIQTPTSLGPGFQQKGRLKINTFIGFLPRPISSLASLESQYNSNGFLHQITATADFSRKKQGRMSASGPKSSAPRGFGRRTTVGSAQKRTQKKNDEKDSNATSTVTNDGLGVSKLPEAKANVQKQGSPVIGESIVLEDEALVEQKLKAERESLRKKEIESLAEEALARGDRMFVYPLVAKPDEDIKVFLNKTLSTLSSEPDVLIMGAFNDWRWKSFTRRLEKTKELHGDWLSCLLHIPKEAYKMDFVFFNGQSVYDNNDSKDFCVDVKGGMDKVEFENFLLEEKWREQEKLAKEEAERKRQEEEKRRNEARKAAIEADREQAKVETQKRREMMLQPALQKAVVSSESVWYIEPKDFKGGDKVKIYYNKSSGPLAYAKEVWIHGGFNNWIDGLSIIEKLKADSKSEDWWFAEVIVPVNALVIDWVFADGPPKEAFLYDNNSHQDFHELVPLRTPEELYWSEEESLMFRKLQEERRLKEEAMRVKMETTARLKAETKERTLKKFLLSQKDVVYTEPLEIQAGRSVTVFYNPSNTVLNGKPEIWFRGSFNRWTHRLGPLPPQKMEAADDGSSHMKTSAKVPLDAYMMDFVFSEKEDGGVFDNRYGLDYHLPVVGGIAKEPPLHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHNVDIIFPKYDCIKYNLVKDLQFNRSYHWGDTEIKVWHGKVEGVSVYFLDPQNGLFQRGCVYGCADDAGRFGFFCHAALEFLLKGGFHPDILHCHDWSSAPVSWLFKDHYTHYGLIKTRVVFTIHNLEFGASAIGKAMTFSDKATTVSRTYAKEVAGNSVISPHLYKFHGIVNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEELQNRLGLKRADLPLVGIITRLTHQKGIHLIKHAIRRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSTHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGAVPVVRKTGGLYDTVFDVDHDKERAQAQVLEPNGFSFDGADAPGVDYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYIELYPSARK", "cigar": "4M4D6M98D2M39D7M4D6M3D13M2D6M237D3M94DMDM79D5M18D2M52D8M175DM268D6MD2M10D2M2D3M4D3M46DM54D4MD2M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M56D9M27D14M14D11M7D4M167D3M2D3M74D4M788D4MD8MD4M14D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D52MD12M2D13MD6M38D17MD8M38D4M7D23M8D2MD11MD4MD7M66D4MD19M9D3M8D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D64M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM815D", "taxon_id": 109376, "taxon_name": "Brassica oleracea var. oleracea", "assembly": "v2.1", "representative": { "id": "Bo8g061350", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 230, "end": 316, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 407, "end": 497, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 568, "end": 658, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 668, "end": 857, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 916, "end": 1038, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 81, 103, 460, 531, 681, 717, 754, 789, 846, 889, 950, 994, 1032, 1073 ] } ], "representative": { "id": "GSBRNA2T00047339001", "score": -49.999095 } }, { "node_id": 4738569, "distance_to_parent": 0.014357, "left_index": 1654, "right_index": 1659, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "speciation", "bootstrap": 87, "children": [ { "node_id": 425851, "distance_to_parent": 0.014714, "left_index": 1657, "right_index": 1658, "protein_stable_id": "CDY21007", "gene_stable_id": "GSBRNA2T00015165001", "gene_display_label": "BnaA08g25180D", "sequence": "MEVCWQIQTPTSLRPGFQQKGRLKINTFIGFLPRPISSLASLESQYNSNGFLHQITASADFSRKKQGRMSASGPKSSAPRGFGRRTTVGSAQKRTQKKNVEKDSNATSTVTNEGLGVSNLPEAKADVQKQALAEDDVLLEQKLKVERESLRRKEIEALAEEALARGDRMFVYPLVAKPDEDIEVFLNKTLSTLSNEPDVLIMGAFNDWRWKSFTRRLEKTEELHGDWLSCLLHIPKEAYKMDFVFFNGQSVYDNNDSKDFCVDVKGGMDKVEFENFLLEEKWREQEKLAKEEAERERQEEEKRRIEARKAAIEADREQAKVETQKRREMLQPALQKAVVSSENVWYIEPKDFKGGDKVKIYYNKSYGPLAYAKEVWIHGGFNNWIDGLSIVEKLKADSKSEDWWFAEVIVPVGALVIDWVFADGPPKEAFLYDNNSLQDFHALVPLRTPEELYWSEEESLIFRKLQEERRLKEEAMRVKMEKTARLKAETKERTLKKFLLSQKDVVYTEPLEIQAGSPVTVFYNPSNTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMEAADDGSSHVKTSAKVPLDAYMMDFVFSEKEDGGVFDNRYGLDYHLPVVGGIAKEPPLHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHNVDIIFPKYDCIKYNFVKDLQFNRSYHWGDTEIKVWHGKVEGVSVYFLDPQNGLFQRGCVYGCADDAGRFGFFCHAALEFLLQGGFHPDILHCHDWSSAPVSWLFKDLYTHYGLIKTRVVFTIHNLEFGASAIGKAMTFSDKATTVSRTYAKEVAGNSVISPHLYKFHGIVNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEELQNRLGLKSADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSTHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGAVPVVRKTGGLYDTVFDVDHDKERAQAQVLEPNGFSFDGADAPGVDYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYIELYHSARK", "cigar": "193DM237D3M94DMDM79D5M18D2M52D8M175DM268D6MD2M10D2M2D3M4D3M46DM54D4MD2M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M56D9M27D14M14D11M7D4M167D3M2D3M871D8MD4M14D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D52MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M9D3M8D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D64M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM815D", "taxon_id": 3708, "taxon_name": "Brassica napus", "assembly": "AST_PRJEB5043_v1", "representative": { "id": "GSBRNA2T00015165001", "score": -50 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 179, "end": 265, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 355, "end": 445, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 516, "end": 606, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 616, "end": 805, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 38, 60, 408, 479, 629, 665, 702, 737, 794, 837, 898, 942, 980, 1021 ] }, { "node_id": 425675, "distance_to_parent": 0.011273, "left_index": 1655, "right_index": 1656, "protein_stable_id": "Bra016818.1-P", "gene_stable_id": "Bra016818", "gene_description": "AT1G11720 (E=0.0) ATSS3 | ATSS3 (starch synthase 3); starch synthase/ transferase, transferring glycosyl groups ", "sequence": "MVVDAAKRAPTRDSLAEEEQSSSPMKKQKVEEEEKIYSETHVPELGCKPQWDVDSYDGREYESDPEDRKLFSDDEEYDKYRRERRRAFDSKGFIYEPLSGNYPIKDLEALVYPNVTSRELMTDLANLCVKKLNETEKKTVELVEIVRVIVLGGGTRKAYITFMARESLNGPLIEYQAKVVTYAKNLKPPVPILCRPSPIPSVYLHQDIKPTESFGGSSLKSKWRKTSYLVRTRGPFDDSNQRPVFGKEDPLRLDVVIQTPTSLRPGFQQKGRLKINTFIGFLPRPISSLASLESQYNSNGFLHQITASADFSRKKQGRMAASGPKSSAPRGFGRRTTVGSAQKRTQKKNDEKDSNATSTVTNEGLGVSNLPEAKADVQKQALAEDDVLLEQKLKVERESLRRKEIEALAEEALAKGDRMFVYPLVAKPDEDIEVFLNKTLSTLSSEPDVLIMGAFNDWRWKSFTRRLEKTEELHGDWRSCLLHIPKEAYKMDFVFFNGQSAYDNNDSKDFCVDVKGGMDKVEFENFLLEEKWREQEKLAKEEAERERQEEEKRRIEARKAAIEADREQAKVETQKRREMLQPALQKAVVSDENVCYIEPKDFKGGDEVKIFYNKSSGPLGYAKEVWIHGGFNNWIDGLSIVEKLKADSKSEDWWFAEVIVPVGALVIDWVFADGPPKEAFLYDNNSLQDFHALVPLRTPEELYWSEEESLIFRKLQEERRLKEEAMRVKMEKTARLKAETKERTLKKFLLSQKDVVYTEPLEIQAGRPVTVFYNPSNTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMEAADDGSSHVKTSAKVPLDAYMMDFVFSEKEDGGVFDNRYGLDYHLPVVGGIAKEPPLHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHNVDIIFPKYDCIKYNLVKDLQFNRSYHWGDTEIKVWHGKVEGVSVYFLDPQNGLFQRGCVYGCADDAGRFGFFCHAALEFLLQGGFHPDILHCHDWSSAPVSWLFKDLYTHYGLIKTRVVFTIHNLEFGAGAIGKAMTFSDKATTVSRTYAKEVAGNSVISPHLYKFHGIVNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEELQNRLGIKSADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSTHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGAVPVVRKTGGLYDTVFDVDHDKERAQAQVLEPNGFSFDGADAPGVDYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYIELYHSARK", "cigar": "5M2D8M8D8M15D2M2D4M20D7M2D12M10D2M4D5M6D72M237D98MD3M41D4M6D31M18D2M52D8M175DM268D6MD2M10D2M2D3M4D3M46DM54D4MD2M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M56D9M27D14M14D11M7D4M167D3M2D3M871D8MD4M14D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D52MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M9D3M8D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D64M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM815D", "taxon_id": 51351, "taxon_name": "Brassica rapa subsp. pekinensis", "assembly": "IVFCAASv1", "representative": { "id": "Bra016818", "score": -100 }, "domains": [ { "id": "IPR006525", "root": 6525, "start": 112, "end": 201, "name": "Cystatin-related_pln", "description": "Cystatin-related, plant" }, { "id": "IPR005085", "root": 5085, "start": 429, "end": 515, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 605, "end": 695, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 766, "end": 856, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 866, "end": 1055, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 91, 136, 203, 256, 288, 310, 658, 729, 879, 915, 952, 987, 1044, 1087, 1148, 1192, 1230, 1271 ] } ], "representative": { "id": "Bra016818", "score": -99.988727 } } ], "representative": { "id": "Bra016818", "score": -99.97437 } } ], "representative": { "id": "Bra019836", "score": -99.958806 } } ], "representative": { "id": "AT1G11720", "score": -174.953613 } }, { "node_id": 4738520, "distance_to_parent": 0.021832, "left_index": 1617, "right_index": 1650, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "dubious", "bootstrap": 69, "duplication_confidence_score": 0, "children": [ { "node_id": 4738533, "distance_to_parent": 0.055489, "left_index": 1632, "right_index": 1649, "taxon_id": 3814, "taxon_name": "Papilionoideae", "node_type": "duplication", "bootstrap": 90, "duplication_confidence_score": 0.3333, "children": [ { "node_id": 425923, "distance_to_parent": 0.094896, "left_index": 1647, "right_index": 1648, "protein_stable_id": "GLYMA07G39040.2", "gene_stable_id": "GLYMA07G39040", "gene_description": "Uncharacterized protein", "sequence": "MEMSLQLNCKTTFGNRSTFFGFGAGLFFPTTSQCHRLAGWRSICINASADFSSRRQKRIFTARPKGHGSDSKKGLVPRPPIGTRIVGEDGNVYTNVPDTSNIGNVEYLDDKSLDYAEIIGIIRESDVHGTYNEVTGETIVEETNDDDDDIIKEEASQLLQLKLKERLRRLEIERIAQENLSLRNKLFVYPPVVEPGQDIEVFLNRSVSTLCNEPNVLIKGAFNDWRWKFFTIVLNKTHLLNGDWWSCQLHVPREAYKVDFVFYNGQNVYDNNDRRDFSIPVDGGMDVFGFEDFLLEEKRRELERLAKEQAEKEEQEKEKRKMEAEKAAIEEDRSLARVEVERKREVLRQLTKNAVKSIDNVWYIEPSEFEGKDLVRLYYNRTSGPLAQTQEVWIHGGHNNWMDKLSIVERLVKTGSKHGDWWHADVVVPDQAVVLDWVFADGPPGNASSYDNNNVQDFHAIVTKVIPDEETWVWEERTIFRKLQEKRRLREEAMRAKVEKTACIKAEAKKKTLKRFLLSQKHIVYTQPLHIQAGSTVTVFYNPCNTNLNGKPEVWFRCSFNRWTHCNGSLPPQKMLHTKYGTYAKAFVKVPLDAYMMDFVFSEKEDGGIIDNNNRMDYHIPILGGIVKETPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDVVLPKYDCLNLSNVKDFQYHRNYFWGGTEIKVWHGKVEGLSVYFLEPQNAFFHAGCVYGCGNDAQRFGFFCHAALEFLHQNGFHPDVIHCHDWSSAPVAWLSKEQYRHCDLSKAGVVFTIHNLEFGAHFIGKAMEYTDKATTVSPSYSREVAGNPAIAPHLHKFQGIINGIDPDIWDPFNDEFIPVSYTSEYVVEGKKAAKEALQQRLGLRKADLPLLGVISRLTHQKGIHLIKHAISRTLERGGQVVLLGSAPDSSIQNDFVNLANQLHSLHHDRVRLCLVYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSVPIVRKTGGLYDTVFDVEHDRDRAQAQGLEPNGFSFDGADALGVDYALNRAISAWYENRHWFNTLCKTVMEQDWSWNRPALDYLELYHAARKSA", "cigar": "193DM237D3M94DMDM83DM18D2M52D8M448D3MD3M5D5M2DM3D6M45D2M54D4M39DM24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D7M5D4MDM30D2M26D7M62D3M27D6M32DM7D5M164D5M2D3M85D4M30D6M71D3M162D3M141D6M56D5M77D9M202D10MD8MD3M15D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D52MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM461D2M352D", "taxon_id": 3847, "taxon_name": "Glycine max", "assembly": "V1.0", "representative": { "id": "GLYMA07G39040", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 196, "end": 282, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 372, "end": 463, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 534, "end": 623, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 633, "end": 822, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 883, "end": 1004, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 37, 50, 426, 497, 588, 646, 682, 719, 754, 811, 854, 915, 959, 997, 1038 ] }, { "node_id": 4738537, "distance_to_parent": 0.014431, "left_index": 1633, "right_index": 1646, "taxon_id": 3814, "taxon_name": "Papilionoideae", "node_type": "speciation", "bootstrap": 95, "children": [ { "node_id": 4738540, "distance_to_parent": 0.039171, "left_index": 1640, "right_index": 1645, "taxon_id": 163742, "taxon_name": "Trifolieae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425989, "distance_to_parent": 0.032525, "left_index": 1643, "right_index": 1644, "protein_stable_id": "Tp57577_TGAC_v2_mRNA10282", "gene_stable_id": "Tp57577_TGAC_v2_gene9945", "sequence": "MEMSLSLQFSCKTFFPNRGGCFNLTPFSGLTPSSWGKASRGLSCVNASADFSRKRQHKKGKSKRSGPKGFVPNSSIGSSSKKNARVKKGEQTLDINVDDDKDGEVEFPLEEKRVVLDNKTNEIAREFGELSLRDETLDVVESNRGEEIENIATVDEVVDDVKLHEEGTSYIGDDENVKDSEVTSAATDDRINEEASHMLKLKLEENLRKQEIERIADESFLRGTQMFVYPPVVKPDQEIDVFLNKTLSTLRDEEDILILGAFNDWRWKSFTVRLNKADLKDNWWSCRLYVPIEAYKLDFVFFNGQSVYDNNDQKDFCIPVNGRMDVLAFEEFLLEEKRKELEKLAKEEAERERIAEEQRRIEADKAAKEEDRLQARLEVERRQEAVLQLMKNAVKSNDDVWYIEPSEFKGNDLVRLYYNGSSGPLEHANEIWIHGGHNNWKDGLSIVERLVKSALKGGGAWWYAEVVVPDQALVLDWVFADGPPQNAVVYDNNHMQDFHAIVPMATPDAQYWVEEEELIYQKLQEERRLREEAIHAKAEKTALMKAETKEKTLKSFLLSQKHIVFTEPLDVQAGSTVTVFYNPSNTNLNGKPEVWFRGSFNRWSHRNGPLPPQRMLPAENGTHVKVSVKVPLDAYMMDFVFSESEHGGVFDNKFGMDYHIPVFGSIVKEPPLHIIHIAVEMAPIAKVGGLGDVVTSLSRAIQDLNHNVDIILPKYDCMNLSNVKDFQYHKNYFWGGTEIKVWHGKVEGLSVYFLEPQNGFFSVGCVYGRANDAERFGFFCHAALEFLLQNGFNPDIIHCHDWSSAPVAWLFKEQYTHYGLSKARAVFTIHNLEFGAALIARAMAFADKATTVSPTYSREVAGNHAIAPYLYKFHGIINGVDPDIWDPYNDNFIPVPYTSENVVEGKRASKEALQQRLGLKTADLPLVGVITRLTHQKGIHLIKHAIWRTLERGGQVVLLGSAPDPRIQNDFVQLANQLHSSHYCDRARLCLSYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDHDRDRAQAQGLEPNGFSFDGADAGGVDYALNRAISAWYDGREWFNTLCKTVMEQDWSWNRPALDYLELYHAARKLE", "cigar": "193DM237D5M92DMDM83DM18D2M52D8M174D2M268D7MD3M12DM110D4MDM32D6M24DMDM10D3MDM34DM47D6M155D3M2DM65D4M8D3MDM30D2M26D7M4DM51D9M27D4M33D2M7D4M165D5M2D3M74D8M3D4M30D6M71D3M159D6M141D4M144D7M11D3M6D9M57D10M36D16M52D10MD8MD3M15D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D4M37D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D10M2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM462D2M351D", "taxon_id": 57577, "taxon_name": "Trifolium pratense", "assembly": "Trpr", "representative": { "id": "Tp57577_TGAC_v2_gene9945", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 236, "end": 321, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 410, "end": 503, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 574, "end": 663, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 673, "end": 862, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 923, "end": 1043, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 32, 50, 466, 537, 628, 686, 722, 759, 794, 851, 894, 955, 1000, 1038, 1079 ] }, { "node_id": 425645, "distance_to_parent": 0.024444, "left_index": 1641, "right_index": 1642, "protein_stable_id": "KEH36862", "gene_stable_id": "MTR_2g023320", "gene_description": "soluble starch synthase III-1", "sequence": "MEISLSLQFSCKTVFPNRSTCFNRTPSSWCKPSTKLSCVNASSDFSRKRQQKKGSVAKSKGSSPKGFVPKSSIGSSSKKNARVKKGEQTLDVNVDDDKDGEVEFSLEEKHAIVDKTNEIVREFGQTSLSDETLDVVETNRGEEDVDDDLLHGEGTSYIGDDGYVKDSQEASPATDDRINEEASRMLKLKLEENLRKQKIERIADENFLRGKQMFVYPPVVKPDQDIEVFLNKNLSTLRDEEDILILGAFNDWRWKSFTIRLNKTDLKDNWWSCQLYVPIEAYKLDFVFFNGQSVYDNNDQKDFCITVDGGMDALAFEEFLLEEKRKELEKLAKEQAERERQAEEERRIEADKAAKEEDRLQARLEVERRQETVLQLMKNAVKSNDSVWYIEPGEFKGKDLVRLYYNGSSGPLEHAKEIWIHGGYNNWKDGLSIVERLVKSGLKGGAWWYADVVVPDQALVLDWVFADGPPQNAAVYDNNHKLDFHAIVPLATPDAQYWVEEEQLIYQKLREERKLREEAIRVKAEKTARMKAETKEKTLKSFLLSQKHIVFTEPLDIQAGSTVTVFYNPSNTNLNGKPEVWFRGSFNRWSHRNGPFPPQRMLPAENGTHVKTSVKVPLDAYMMDFVFSESENGGVFDNKFGMDYHIPVFGSIVKEPPLHIIHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSNVKDFQFHKSYFWSGTEIKVWHGKVEGLSVYFLEPQNGFFWVGCVYGRANDAERFGFFCHAALEFLLQNGFNPDIIHCHDWSSAPVAWLFKEQYTHYGLSKARAVFTIHNLEFGAALITRAMAFADKATTVSPTYSREVAGNPAIAPYLYKFHGIINGIDPDIWDPYNDNFIPVPYTSENVVEGKRASKEALQQKLGLKTADLPLVGVITRLTHQKGIHLIKHAIWRTLERGGQVVLLGSAPDPRIQNDFVHLANQLHSSHYCDRARLCLSYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDHDRDRAQSQGLEPNGFSFDGADAGGVDYALNRAISAWYDGREWFNTLCKTVMEQDWSWNRPALDYLELYHAARKLE", "cigar": "193DM237D5M92DMDM83DM18D2M52D8M174D2M268D2M7D2M12DM110D4MDM32D6M24DMDM10D3MDM34DM47D6M155D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M27D4M33D2M7D4M165D5M2D3M74D8M3D4M31D5M71D3M159D6M141D4M144D7M11D3M72D10M36D16M52D10MD8MD3M15D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D10M2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM462D2M351D", "taxon_id": 3880, "taxon_name": "Medicago truncatula", "assembly": "MedtrA17_4.0", "representative": { "id": "MTR_2g023320", "score": -100 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 223, "end": 308, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 398, "end": 489, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 560, "end": 649, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 659, "end": 847, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 44, 452, 523, 614, 672, 708, 745, 780, 837, 880, 941, 986, 1024, 1065 ] } ], "representative": { "id": "MTR_2g023320", "score": -99.975556 } }, { "node_id": 4738551, "distance_to_parent": 0.03399, "left_index": 1634, "right_index": 1639, "taxon_id": 3847, "taxon_name": "Glycine max", "node_type": "duplication", "bootstrap": 100, "duplication_confidence_score": 1, "children": [ { "node_id": 425844, "distance_to_parent": 0.012528, "left_index": 1637, "right_index": 1638, "protein_stable_id": "GLYMA15G11500.1", "gene_stable_id": "GLYMA15G11500", "gene_description": "Uncharacterized protein", "sequence": "MEMSLQLNCKTVFPYRGGDCVSGVLPRRHSVTFTSGYICSPCKAGWGVSFFRASADFSRKRQQKKVPVARTKGTAGKGFVPSKKSTRVKKGDTLTSVVSEVSGGDKKQTVDVNVDADKEGELEFSQEEKFEAVDRIDEIVRDVGELSLLDETAGELLLLDESNEANISVIDEDDEVLELRKEEIPYNGGVGIVEGSSEEGLFDRARIDENVKETDTDGEITEEAVEESSSAADDRINEEAARLLKLELEANQRRQEIERIAEEKLSQGMKLFVYPPVVKPDQDIELFLNKNLSTLSEEPDILIMGAFNDWKWKSFSIRLNKSDLKGDWWSCQLYVPKEAYKVDFVFFNEQNVYDNNDQKDFCIPVDGGMDALAFEDFLLEEKRKELEELAWAQAERERQAEEQRRMEADRAAKEEDRARAKAEVGRMRETLPQLLKNAVKSIDNVWYIEPSEFKGNELIRLYYNRSSGPLANANEIWIHGGHNNWKYGLSIVERLVKSVLKGGEWWYADVVVPDQALVLDWVFADGPPKKAVVYDNNRKQDFHAIVPMAIPDEQYWVEEEQQIYRKFQEERRLREEAIRAKAGKTAQMKAETKERTLKRFLLSQKHIVFTDPLDVQAGSTVTVFYNPSNTNLNGKPEVWFRCSFNRWSHRNGPLPPQRMLPAENGTHVKASVKVPLDAYMMDFVFSESEHGGVFDNKFGMDYHIPVFGGIVKEPPLHIIHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSNVKDFDYHKSYSWGGTEIKVWHGKVEGLSVYFLEPQNGFFQVGCVYGRGNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPAAWLFKDNYAHYGLSKARVVFTIHNLEFGAHSIGKAMAHADKATTVSPTYSREIAGNPLIAPHLHKFHGIINGIDPDIWDPYNDKFIPESYSSKNVVEGKRASKEALQQRLSLKKADLPLVGIITRLTHQKGIHLIKHAIWRTLERGGQVVLLGSAPDPRIQNDFVNLANELHSAHHDRARLCLAYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSVPVVRKTGGLYDTVFDVDHDKDRAQAQGLEPNGFSFDGADTGGVDYALNRAISAWYEGRDWFNSLCKRVMEQDWSWNRPALDYLELYHAARKAE", "cigar": "193DM237D3M94DMDM83DM18D2M52D4M452D3MD3M4D6M2D10M34D4M5D4M54D3M38D3M24DMDM10D3MDM34DM47D6M155D3M2DM8D2M54D5M8D3MDM30D2M26D2M63D7M29D11M15D11M7D4M165D5M2D3M74D15M30D6M234D5M141D4M58D19M65D9M11D3M6D8M59D15M28D19M49DMD10MD8MD3M15D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM462D2M351D", "taxon_id": 3847, "taxon_name": "Glycine max", "assembly": "V1.0", "representative": { "id": "GLYMA15G11500", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 281, "end": 366, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 455, "end": 547, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 618, "end": 707, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 717, "end": 906, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 38, 56, 510, 581, 672, 730, 766, 803, 838, 895, 938, 999, 1043, 1081, 1122 ] }, { "node_id": 425733, "distance_to_parent": 0.008716, "left_index": 1635, "right_index": 1636, "protein_stable_id": "GLYMA13G27480.1", "gene_stable_id": "GLYMA13G27480", "gene_description": "Uncharacterized protein", "sequence": "MEMSMQLNCKTVFPYRGGYICSPCKAGWGVSFVRASADFSRKRQQKKVSVARTKGTSGKGFVPSKKNTRMKKGDTLTSVVSEVSGGDKKQTVEVNVDDTDKEGELEFSQEEKFEAVDRIDENVGDVGDLSLLDETVGELSLLDESNQATISVFDEDVEVLESWKEEFPYNGGVGIVEDSSEEGLLESAEIDENVKDTDTDGDITEEAVEESSSADDDRINEEAAGLLKLELEANQRRQEIERIAEEKLSQGIKLFVYPPVVKPDQDIELFLNKNLSTLSEEPDILIMGAFNDWKWKSFSIRLNKLHLKGDWWSCQLYVPKEAYKVDFVFFNGQNVYDNNDQKDFCIPVDGGMDALAFEDFLLEEKRKELEELARAQAERERQAEEQRRIEADRAAKEEDRARAKAEIGKMRETLPQLLKNAVKSVDNVWHIEPSEFKGKDLIRLYYNRSSGPLANANEIWIHGGHNNWKYGLSIVERLVKSVLKGGEWWYADVVVPDQALVLDWVFADGPPKKAVVYDNNRKQDFHAIVPGAIPDEQYWVEEEQLIYRKFQEERRLREDAIRAKAEKTAQMKAETKERTLKGFLLSQKHIVFTDPLDVQAGSTVTIFYNPSNTNLNGKPEVWFRCSFNRWSHRNGPLPPQRMLPAENGTHVKASFKVPLDAYMMDFVFSESEHGGVFDNKFGMDYHIPVFGSIAKEPPLHIIHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSNVKDFDYHKSYSWGGTEIKVWHGKVEGLSVYFLEPQNGFFQVGCVYGRGNDGERFGFFCHAALEFLLQNGFHPDIIHCHDWSSAPVAWLFKDNYAHYGLSKARVVFTIHNLEFGAHSIGKAMAYADKATTVSPTYSREIAGNPVIAPHLHKFHGIINGIDPDIWDPYNDKFIPVSYSSENVVEGKRASKETLQQRLSLKKADLPLVGIITRLTHQKGIHLIKHAIWRTLERGGQVVLLGSAPDPRIQNDFVNLANELHSAHHDRARLCLAYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKDRAQAQGLEPNGFSFDGADTGGVDYALNRAISAWYEGRDWFNSLCKRVMEQDWSWNRPALDYLELYHAARKAE", "cigar": "193DM237D3M94DMDM83DM18D2M52D4M452D3MDM58D4M5D4M54D3M38D3M24DMDM10D3MDM34DM47D6M155D3M2DM8D2M54D5M8D3MDM30D2M26D2M63D7M29D11M15D11M7D5M164D5M2D3M74D15M30D6M234D5M141D4M58D19M65D9M11D3M6D8M59D15M28D19M49DMD10MD8MD3M15D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM462D2M351D", "taxon_id": 3847, "taxon_name": "Glycine max", "assembly": "V1.0", "representative": { "id": "GLYMA13G27480", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 264, "end": 349, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 439, "end": 530, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 601, "end": 690, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 700, "end": 889, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 20, 38, 493, 564, 655, 713, 749, 786, 821, 878, 921, 982, 1026, 1064, 1105 ] } ], "representative": { "id": "GLYMA13G27480", "score": 0.008716 } } ], "representative": { "id": "MTR_2g023320", "score": -99.936385 } } ], "representative": { "id": "MTR_2g023320", "score": -99.921954 } }, { "node_id": 4738523, "distance_to_parent": 0.009971, "left_index": 1618, "right_index": 1631, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "speciation", "bootstrap": 17, "children": [ { "node_id": 425932, "distance_to_parent": 0.08894, "left_index": 1629, "right_index": 1630, "protein_stable_id": "EOY28706", "gene_stable_id": "TCM_030230", "gene_description": "Soluble starch synthase 3, chloroplastic/amyloplastic isoform 1", "sequence": "MEVSLQGQRPLSYKDVFNHTNVRFKIKPFLGSFPFARTTLFTPWRSEYPASKLSHRVTSSAADFSKRRQRRLSTPSSKGPAPKGFTPKTQVGTSTQKRDLKSNGEKEDSSIPTSSESAVLDKTEIESNIALEEESTIELYQKNRVDEAETEEPKEDIPSMGKELSVGKSNQNVENGRSIGKILEDVAELQKNETTLKSDTVSTARDVSSEGKHLDGTKTDETVSIKDESVESDEKTIEDTLKLKLEMEANLRKQEIEGLAEENFSRGNKVFVYPQSIKPDEDIEVFLNRSFSTLANESDILIMGAFNDWRWRSFTVRLKKTHLNGDWWSCQIHVPKEAYKMDFVFFNGQNFYDNNDTKDFCIPVEGGMDVFSFEDFLLEEKRRELEKLAKERAEKERQEEEKKRIEAEKAASEADRAQARVETERRREFLQQLMKKAASSVDNIWFIEPKEFKGGDKVKLHYNKSSGPLAHANELWIHGGHNNWNDGLTIIEKLVRSERESGDWRYAEVVIPDRALVLDWVFADGPPKSATMYDNNNYEDFHAIVPKSIPEELYWVEEEHRMFRKLQEERKLREELIRAKAEKTARMKAEMKERTLKRFLLSQKHIVYTEPLDVHAGSIVTVFYNPANTVLNGKPEVWFRCSFNRWTHRMGPLPPQRMLPVDNGSHVKATVKVPLDAYMMDFVFSEREDGGIFDNKGGMDYHIPVFGGIVNEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIIFPKYDCLNFSHVKDLHYQRSYSWGGTEIKVWLGKVEGLSVYFLEPQNGFFCTGCVYGSRNDAERFGFFCHAALEFLHQGGFHPDIIHCHDWSSAPVAWLFKDHYMHYSLGKNRVVFTIHNLEFGAHFIAKAMAYADKATTVSHTYSREVAGNPAVAPHLHKFHGILNGIDLDIWDPYNDKFIPICYTSENVVEGKRAAKEALQQRLGLKKADVPLVGIITRLTHQKGIHLIKHAIWHTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHGDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKDRADSQGLEPNGFNFDGADSGGVDYALNRAISAWYDGREWFYSLCKRVMEQDWSWNRPALDYMELYHAATKN", "cigar": "193DM237D3M94DMDM79D5M18D2M52D8M174D2M268D7MDM10D2M2D9M103D3MD2M30D7M24D3M10D5M34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M27D13M15D9MDM7D4M165D5M2D3M74D5M6D4M30D6M75D6M132D4M164D3M58D18M68D7M11D3M6D8M58D10M36D15M53D10MD3MD4MD3M15D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM462DM352D", "taxon_id": 3641, "taxon_name": "Theobroma cacao", "assembly": "Theobroma_cacao_20110822", "representative": { "id": "TCM_030230", "score": -100 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 280, "end": 365, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 455, "end": 546, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 617, "end": 706, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 716, "end": 906, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 40, 63, 509, 580, 671, 729, 765, 802, 837, 894, 937, 998, 1042, 1080, 1121 ] }, { "node_id": 4738527, "distance_to_parent": 0.005502, "left_index": 1619, "right_index": 1628, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "speciation", "bootstrap": 1, "children": [ { "node_id": 425764, "distance_to_parent": 0.071702, "left_index": 1626, "right_index": 1627, "protein_stable_id": "VIT_10s0116g01730.t01", "gene_stable_id": "VIT_10s0116g01730", "gene_description": "Putative uncharacterized protein", "sequence": "MEVALQAQRPVSCRALSDREANFKIKPFLGFFPNGRATQSSQHSWRREFPLSGVSNGIVASADFSRRRQRKVSMSGPRGPGPKGFLPKTPVETSTQKRDQRNTGKNEDPSTPTSSEYVGTGKKTLGTDEEQTVEITRGTEVDEERNDKGSSAPTSSEYESGKKTLETTVVAGEKQTVEITQGKKVEGGDDNGKVAGADENVIESQKIKPTAKSDTGHAKDGISLEEKNSGIIKSSANEGNESIKFDGVRAEDVSLDLKLEMEANLHKQVLEELAEENFSRGNKMFYYPQVVKPDQDIEVFLNRSVSTLSNEPDVMIMGAFNDWRWKSFTIQLNKTHLQGDWWSCQVHIPKEAYKMDFVFFNGTNVYDNNNQKDFCIPVHGGMDALAFEDILLEEKRRELEKLAKEQAERERQAEEQRRIEAEKAAREADRAQARAETERRREMLQHLMKKGAVSVDNVWCIEPREFKGDDLVRLYYNRSSGPLAHANDIWIHGGHNNWKDGLSIVGSLIKDEKKEGDWWYVEVVVPERALVLDWVFADGPPQRASLYDNNHREDFHAIVPQSISEELYWVEEEYQIYKKLQEERWLREEAIRAKVERTARMKAEAKERTLKMFLLSQKHIVYTEPLDVQAGSTVSVLYNPANTVLNGKSEVWFRCSFNRWTHRNGSLPPQKMLPVDNGSHLKATEQTVTQYYNTLTRYWQHLDLFETHSWKSSSDLPLKVFGCTAFVHVYSQNRSKFAPRANKCIFLGYSPTQKGYKCYSPTNKRFYTTMDVSFFEHVFFYPKSHVQGESMNEHQVWESLLEGVPSFHSESPNPSQFAPTELSTPMPSSVQPAQHTNVPSPVTIQSPMPIQPIAPQLANENLQVYIRRRKRQELEHGSQSTCGQYIDSNSSLPEENIGEDRVGEVLIPSIDDSTLLIALRKGVRRCTDHPIGNYVTYEGLSPSYRAFATSLDDTQVPNTIQEALKISEWKKAVQDEIDALEKNGTWTITDLPVGKRPVGFKVPLDAYMMDFVFSEREDGGIFDNRNGMDYHIPVFGSVVKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHHVDIILPKYDCLNLSNVGGLGDVVTSLSRAVQELNHHVDIILPKYDCLNLSNVKDFQYKRCYFWGGTEIKVWFGKVEGLSVYFLEPQNGFFSAGCIYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVSWLFKDHYKHYGLSKARVVFTIHNLEFGAPLIAKAMVYTDKATTVSHTYSREVSGNPAIAPHLYKFHGILNGIDLDIWDPYNDKFIPVPYISDNVVEGKRAAKEALQQRLGLKKSDFPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHGDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQAQGLEPNGFNFDGADPVGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHAARK", "cigar": "193DM237D3M94DMDM79D5M18D2M52D8M175DM268D7MDM10D2M2D7MD2M46DM54D4MD2M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M27D13M15D7M12D3M165D5M2D3M74D5M6D4M30D6M71D10M132D6M8D12M141D4M58D3M3D13M65D9M11D3M6D8M58D10M42D11M49D12MD8MD3M15D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD329MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4D33M2D5M6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM815D", "taxon_id": 29760, "taxon_name": "Vitis vinifera", "assembly": "IGGP_12x", "representative": { "id": "VIT_10s0116g01730", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 294, "end": 379, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 469, "end": 560, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 631, "end": 721, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 957, "end": 1035, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1089, "end": 1269, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1328, "end": 1450, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 42, 63, 523, 594, 685, 712, 1000, 1058, 1094, 1130, 1167, 1202, 1259, 1302, 1363, 1407, 1445, 1486 ] }, { "node_id": 4738529, "distance_to_parent": 0.005694, "left_index": 1620, "right_index": 1625, "taxon_id": 91835, "taxon_name": "fabids", "node_type": "speciation", "bootstrap": 3, "children": [ { "node_id": 425748, "distance_to_parent": 0.108315, "left_index": 1623, "right_index": 1624, "protein_stable_id": "POPTR_0004s01410.1", "gene_stable_id": "POPTR_0004s01410", "gene_display_label": "POPTRDRAFT_856021", "gene_description": "starch synthase 3", "sequence": "MEVALLVQSPLSCSGRGVFSERNGLKIKPFLVGSFPHVRSGQLSSLNSWRKEFPASGVSFRIAATADFSKRRQRKMSNARPRGSSPKGFTPKTPVGTSTQKRDLENNGEKEGSVTPKSKDKIALEGSQNDDLKNDGIVKEKSISIDARKTEDDSLQIKLKLEMEEKLRKEETDRLAEEKLRKQEIERLVEENFSKGNKLFVYPQMVKPDEDIEVFLNRSLSTLSDEPDILIMGAFNDWRWKSFTFRLSKTHLNGDWWSCQVHVPKEAYKMDFVFFNGQDVYDNNDRKDFYILVEGGMDAFAFDDFLLEEKRRELEKLAKEQAVKERLAEEQRRREAEKAASEADRAQARAEIEKRRRTLQELMKKAARSFNNVCHVEPSEFKGEDTIKLYYNKSSGPLAHANDLWVHGGHNNWKDGLSIVERLVSSDKKDGDWWYANVVVPDRAFVLDWVFADGPPQNATVYDNNHRQDFHAIVPNGIPEELYWVEEEHQIYRKLQEKRRLREDAIRAKAEKTARIKAETKEQTLKRFLLSQKHIVYTEPLDVQAGSTVTVFYNPANTILNGKPEVWFRGSFNRWTHRKGPLPPQKMLPADNGSHVKATVKVPLDAYMMDFVFSEKEDGGIFDNREGMDYHIPVSGGIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHSVDIILPKYDCMKISHVKDLHYQRSYSWGGTEIKVWFGKVEGLSVYFLEPQNGMFWAGCVYGCKNDGERFGFFCHAALEFLQQSGFHPDIIHCHDWSSAPVAWLFKDHYMHYGLSKSRVVFTIHNLEFGANNIGKAMAYSDKATTVSPTYSREISGNPLIASHLHKFHGILNGIDPDIWDPYNDTYIPVPYTSENVVEGKRTAKEALQQRLGLKKADLPLVGIITRLTHQKGIHLIKHAIWRTLERGGQVVLLGSAPDPRVQNDFVNLANHLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIAVVRKTGGLFDTVFDVDHDKERAKAQGLEPNGFNFDGADPAGVDYALNRAISAWYDGRDWFNSMCKKVMEQDWSWNKPALDYLELYHSARK", "cigar": "193DM237D3M94DMDM79D5M18D3M50D9M175DM268D9M10D2M2D10M46DM54D4MD2M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M27D12M961D8M36D13M55D10MD8MD20M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM815D", "taxon_id": 3694, "taxon_name": "Populus trichocarpa", "assembly": "JGI2.0", "representative": { "id": "POPTR_0004s01410", "score": -100 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 209, "end": 294, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 384, "end": 475, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 546, "end": 635, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 645, "end": 833, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 45, 67, 119, 438, 509, 600, 658, 694, 731, 766, 823, 866, 927, 971, 1009, 1050 ] }, { "node_id": 425840, "distance_to_parent": 0.093257, "left_index": 1621, "right_index": 1622, "protein_stable_id": "EMJ14864", "gene_stable_id": "PRUPE_ppa001074mg", "gene_display_label": "SS3", "gene_description": "starch synthase 3", "sequence": "MEEKLRKEEIVRLAEENFLRGNKIFVYPQVVKPDQDIDIFLNRSLSTLSNEPEILIMGAFNDWRWKSFTFRLNKTQLKGDWWSCQFHVPKESYKIDFVFFNGQNIYDNNDEKDFCIAVEGGMDLFAFEDFLLDEKRKELEKLAKEQAERERQAEEQRQIEAEKAASEADRAEARAEIERRRKMVQELIKKGVRSVENVWYIEPSEFKGEDLVKLYYNRSSGPLAHAKEIWIHGGHNNWKDGLSIVERLVSSEEKDGDWWYANVVVPDQAVVLDWVFADGPPQNAVLYDNNHRHDFHSIVPKSIPEELYWVEEEHKIYRKLQEERRLREEAIRAKAERTARMKAEMKERTLKRFLLSQKHIVYTEPLDVQAGSMATVFYNPASTVLNGKPEVWFRGSFNRWTHRKGPLPPQKMLPAETGSHVKTTVKVPLDAYVMDFVFSEKKDDDGLFDNKNGMDYHIPVFGGVLKESPMHIVHISVEMAPIAKVGGLGDVVTSLSRAVQDLNHHVDIILPKYDCLNLSNVKGFQYNRSYSWGGTEIKVWFGKVEGVPVYFLEPQNRFFYTGCIYGCKNDAERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLYKDHYMHYGLSKARVVFTIHNLEFGAHFIGKAVGYSDKATTVSDSYAKEVAGNPAIAPHLYKFHGIINGIDQDIWDPYNDKFIPISYTSENVVEGKQAAKEALQQRLGLKTADLPVVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSYGDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSIPVVRKTGGLYDTVFDVDHDKERADAQGVEPNGFSFDGPDAAGVDYALNRAISAWYDGRDWFNSLCKTVMEQDWSWNKPALDYMELYHAARK", "cigar": "2970D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM10D9M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM815D", "taxon_id": 3760, "taxon_name": "Prunus persica", "assembly": "Prupe1_0", "representative": { "id": "PRUPE_ppa001074mg", "score": -150 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 34, "end": 119, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 209, "end": 300, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 371, "end": 461, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 471, "end": 659, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 263, 334, 425, 484, 520, 557, 592, 649, 692, 753, 797, 835, 876 ] } ], "representative": { "id": "PRUPE_ppa001074mg", "score": -149.906743 } } ], "representative": { "id": "PRUPE_ppa001074mg", "score": -149.901049 } } ], "representative": { "id": "PRUPE_ppa001074mg", "score": -149.895547 } } ], "representative": { "id": "PRUPE_ppa001074mg", "score": -149.885576 } } ], "representative": { "id": "AT1G11720", "score": -174.78446599999998 } } ], "representative": { "id": "AT1G11720", "score": -174.77138799999997 } } ], "representative": { "id": "AT1G11720", "score": -174.73660499999997 } } ], "representative": { "id": "AT1G11720", "score": -174.69198399999996 } }, { "node_id": 4738247, "distance_to_parent": 0.026015, "left_index": 1419, "right_index": 1612, "taxon_id": 4734, "taxon_name": "commelinids", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4738252, "distance_to_parent": 0.121689, "left_index": 1430, "right_index": 1611, "taxon_id": 4479, "taxon_name": "Poaceae", "node_type": "duplication", "bootstrap": 96, "duplication_confidence_score": 0.9545, "children": [ { "node_id": 4738256, "distance_to_parent": 0.058691, "left_index": 1525, "right_index": 1610, "taxon_id": 4479, "taxon_name": "Poaceae", "node_type": "speciation", "bootstrap": 97, "children": [ { "node_id": 4738355, "distance_to_parent": 0.05205, "left_index": 1596, "right_index": 1609, "taxon_id": 147369, "taxon_name": "Panicoideae", "node_type": "speciation", "bootstrap": 99, "children": [ { "node_id": 4738366, "distance_to_parent": 0.048379, "left_index": 1603, "right_index": 1608, "taxon_id": 147429, "taxon_name": "Andropogoneae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 426056, "distance_to_parent": 0.046269, "left_index": 1606, "right_index": 1607, "protein_stable_id": "Zm00001d000002_P002", "gene_stable_id": "Zm00001d000002", "gene_description": "", "sequence": "MEMVLRSQSPLCLRSGPVLIFRPTVAGGGGGTQSLLRTTRFARRRVIRCVVASPGCPNRKSRTASPNVKVAAYSNYAPRLLVESSSKKSEHHDSSRHREETIDTYNGLSGSDAAELTSNRDVEIEVDLQHISEEELPGKVSINASLGEMETVDEAEVEEDKFEVDTSGIVLRNVAVREVDPKDEHNAKDVFVVDSSGTAPDNAAVEEVVDEAEVEEDMVDVDILGLDLNNATIEEIDLMEEALLENFDVDSPGNASSGRTYGGVDELGELPSTSVDCIAINGKRRSLKPKPLPIVRFQEQEQIVLSIVDEEGLIASSCEEGQPVVDYDKQEENSTAFDEQKQLTDDFPEEGISIVHFPEPNNDIVGSSKFLEQKQELDGSYKQDRSTTGLHEQDQSVVSSHGQDKSIVGVPQQIQYNDQSIAGSHRQDQSIAGAPEQIQSVAGYIKPNQSIVGSCKQHELIIPEPKKIESIISYNEIDQSIVGSHKQDKSVVSVPEQIQSIVSHSKPNQSTVDSYRQAESIIGVPEKVQSITSYDKLDQSIVGSLKQDEPIISVPEKIQSIVHYTKPNQSIVGLPKQQQSIVHIVEPKQSIDGFPKQDLSIVGISNEFQTKQLATVGTHDGLLMKGVEAKETSQKTEGDTLQATFNVDNLSQKQEGLTKEADEITIIEKINDEDLVMIEEQKSIAMNEEQTIVTEEDIPMAKVEIGIDKAKFLHLLSEEESSWDENEVGIIEADEQYEVDETSMSTEQDIQESPNDDLDPQALWSMLQELAEKNYSLGNKLFTYPDVLKADSTIDLYFNRDLSAVANEPDVLIKGAFNGWKWRFFTEKLHKSELAGDWWCCKLYIPKQAYRMDFVFFNGHTVYENNNNNDFVIQIESTMDENLFEDFLAEEKQRELENLANEEAERRRQTDEQRRMEEERAADKADRVQAKVEVETKKNKLCNVLGLARAPVDNLWYIEPITTGQEATVRLYYNINSRPLVHSTEIWMHGGYNNWIDGLSFAERLVHHHDKDCDWWFVDVVVPERTYVLDWVFADGPPGSARNYDNNGGHDFHATLPNNMTEEEYWMEEEQRIYTRLQQERREREEAIKRKAERNAKMKAEMKEKTMRMFLVSQKHIVYTEPLEIHAGTTIDVLYNPSNTVLTGKPEVWFRCSFNRWMYPGGVLPPQKMVQAENGSHLKVTVYVPRDAYMMDFVFSESEEGGIYDNRNGLDYHIPVFGSIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYGCLNLSNVKNLHIHQSFSWGGSEIKVWRGLVEGLCVYFLEPQNGMFGVGYVYGRDDDRRFGFFCRSALEFLLQSGSSPNIIHCHDWSSAPVAWLHKENYAKSSLANARVVFTIHNLEFGAHHIGKAMRYCDKATTVSNTYSKEVSGHGAIVPHLGKFYGILNGIDPDIWDPYNDNFIPVHYTCENVVEGKRAAKRALQQKFGLQQIDVPVVGIVTRLTAQKGIHLIKHAIHRTLERNGQVVLLGSAPDSRIQADFVNLANKLHGVNHGQVRLSLTYDEPLSHLIYAGSDFILVPSIFEPCGLTQLVAMRYGTIPIVRKTGGLFDTVFDVDNDKERARDRGLEPNGFSFDGADSNGVDYALNRQAQAISAWFDARSWFHSLCKRVMEQDWSWNRPALDYIELYRSASKL", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD6M37D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM9DM54D5M8D3MDM30D2M26D7M4DM51D10M25D15M2D5M7D9MDM7D5M9DM205D3M25D20M30D6M30D16M25D13MD16M2D31M19DM28D3M2D30M16D100M4D15M10D105MD52MD14M11DMDM8D44M5D30M3D22MD90MDMD13M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D6M12D2M28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM462DM352D", "taxon_id": 4577, "taxon_name": "Zea mays", "assembly": "AGPv4", "representative": { "id": "Zm00001d000002", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 791, "end": 876, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 966, "end": 1057, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1128, "end": 1217, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1227, "end": 1414, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1477, "end": 1595, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 33, 55, 1020, 1091, 1182, 1240, 1276, 1313, 1347, 1404, 1447, 1508, 1552, 1590, 1634 ] }, { "node_id": 425985, "distance_to_parent": 0.013031, "left_index": 1604, "right_index": 1605, "protein_stable_id": "KXG24650", "gene_stable_id": "SORBI_007G068200", "gene_description": "hypothetical protein", "sequence": "MEMALRSQSPLCLRSGPVFVVRPTAAGGGATQPLLRPTRFVRRRIIQRVVASPGCPNRKSRTNFPNVKVAAFSNYAPRLLVESSSKKSEHHDSRHHEETIDTFNGLSGSDVAESSNRDVEIEVDLQHNASSNSASREVYMAEEVDPNMSEEELPGNVLINMSSGEMETMDDAEVEEDKFELKFSGVLLRNAAVSELNPKDEHKAKEDVFVVDSSGTALDNAAVEEVVDEAEVEEDMVDVDILGLALNDVTMEEMDLMDREEALQENFDVNSPGNASSGGMYSGVDELGKPPSTSMDGIADNETRRNLKPVPLPIVRYQEQEKIVLSIVEEEGLIVGSCEEGQAVVDYHKQEENSTNFDEQKQLTDGFPDQGIYIVQFPKQNNDTVGSPKFLEQKQEFVGSYKQDRSIIGLHEHDQSIVGVPQQIQYIDQSIAGSHKQDESIASAPEKIQSVGGYIKPNQSIVGSCRQHESIIVVPEKIQSIISYNEIDQSIVGSHKQDKSVVSVPEQTQSIVSYSTTNQSTIDSYRQVESIIGVPEKVQSIISYDKLDKSIVGSHKQDESIVSVPEKIQSIVGYSKPDQSIVGLPKQQHSIVHIDERKQSIVGFPKQDLSIIGISKESQTMQLATVGTHDGLLMKGVEAKETSQKTEADTLQAEFYADNLLQKHKEGFTKETDEITIIEKINDEDLMMIEEEKSIGMEEQMVITEEDIPMAKVEIGIDKAKFLHLLSEEESSWDENEVGIIEDEEQYEVDETSMSTEQDIQESPNDNVDPQALQRMLQELAEKNSSLGNKLFAYPEVLKADSTIDLYFNRDLSAVANEPDVLIKGAFNGWKWKFFTEKLHKSELGGGWWCCKLYIPKQAYRMDFVFFNGRTLYENNDNNDFVIQIESTMDENLFEDFLAEEKQRELEKLANEEAERRRQTEEQRRREEERAADKADRAQAKVEVEMKKKKLHNVLGLARASVDNLWYIEPIATGQGATIRLYYNINSRPLVHSTEIWMHGGYNNWIDGLSFSERLVHHNDKDSDWCFADVVLPERTYVLDWVFADGPPGNARNYDNNGGHDFHATLPNNMTVEEYWMEEEQRIYTRLQQERREREEAIKRKAERNAKMKAEMKEKTMRMFLVSQKHIVYTEPLEIRAGTTVDVLYNPSNTVLTGKPEVWFRCSFNRWMYPGGVLPPQKMVQAENGSHLKATVYVPRDAYMMDFVFSESEEGGIYDNRNGLDYHIPVFGSIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKHDCLNLSNVKNLHIHQSFSWGGSEIKVWRGLVEGLCVYFLEPQNGMFGVGCVYGRNDDRRFGFFCHSALEFLLQSRSSPNIIHCHDWSSAPVAWLYKENYAESSLANARVVFTIHNLEFGAHYIGKAMKYCDKATTVSNTYSREVSGHSAIVPHLGKFYGILNGIDPDIWDPYNDNFIPVHYTSENVIEGKRAAKKALQQKFGLQQIDVPIVGIVTRLTAQKGIHLIKHAIHRTLERNGQVVLLGSAPDPRIQADFVNLANTLHGVNHGQVRMSLTYDEPLSHLIYAGSDFILVPSIFEPCGLTQLVAMRYGTIPIVRKTGGLFDTVFDVDNDKERARARGLDPNGFSFDGADSKGVDYALNRAISAWFDARSWFHSLCKRVMEQDWSWNRPALDYIELYRSASKL", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD2MD3M37D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM9DM54D5M8D3MDM30D2M26D7M4DM51D9M26D15M2D5M7DMD7MDM7D5M9D10M145D5M2D5M38D4M25D20M30D6M30D16M25D30M2D31M19DM28D35M16D100M4D15M10D11M10D84MD52MD14M11DMDM8D44M5D30M3D56MD56MDMD13M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM462DM352D", "taxon_id": 4558, "taxon_name": "Sorghum bicolor", "assembly": "Sorghum_bicolor_v2", "representative": { "id": "SORBI_007G068200", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 801, "end": 886, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 976, "end": 1067, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1138, "end": 1227, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1237, "end": 1426, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1487, "end": 1607, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 32, 54, 1030, 1101, 1192, 1250, 1286, 1323, 1357, 1414, 1457, 1518, 1562, 1600, 1641 ] } ], "representative": { "id": "SORBI_007G068200", "score": 0.013031 } }, { "node_id": 4738358, "distance_to_parent": 0.003088, "left_index": 1597, "right_index": 1602, "taxon_id": 4555, "taxon_name": "Setaria italica", "node_type": "duplication", "bootstrap": 99, "duplication_confidence_score": 1, "children": [ { "node_id": 425709, "distance_to_parent": 0.049117, "left_index": 1600, "right_index": 1601, "protein_stable_id": "Si015393m", "gene_stable_id": "Si015393m.g", "gene_description": "Uncharacterized protein", "sequence": "MEIALRPQSLLCSRSHQPLVIQPAFEGGGPVQSLLRTSRCTRSRIIRCTVASSGVGTILLKAYFSVGCFTDLMFSCTAYADCSNRKSRRLVYPKIKVNAFRGYAPKVTIQSSTEKSEHHDCNEETIGTYNGQLSTDLAESTNGRDAENAKEDQAHNASSCSAFRETDVIEEVGLDLFKAEFPGNALINISLAEVEALDEAEVEEDKFEVDFSGIALSSAAVWALDSKDEAKAKEDTFVVDLSRVAPYCAAAGELGDKQKQLTSGLPEQDLCIVQFSEQNHAIVGSPKQDVGLLEQKQAIVGSYEQDQSIVSSHEQDRSADGSHSQDESIVGAPEQIRSIFGYHKSDQSIVGSYRQDKYTVGLPENFKSIVGYYKSDEYVVVPHKQDEPIVGVPEQTQPVISHRTPDRSIVGFPKHHHSIVHIPEQKQSIVGFHIQDLSIVDSSMESQTKQLAVVRTHDSLLTKKVEAKDGDYTSQKTDGDTLNAKFDVDNLLQKYKEGFTEEAAEMTTSTRIDEERLDMIEEKKGIRVDEWIVTEEGISMSEADFLPLLCEKESSWVEDEVEITEDEEQYEVDEIPMFAEQDIQELPHHDVDQQALQRMLQELTIKNYSLGSKLFVFPEVLKADSTIDLYFNRDLSTLANEHDILIKGAFNGWKWRFFTEKLHMSEQGGDWWCCKLYIPKQAYRLDFVFFNGRTVYENNGNKDFMIQIKSTMDEHLFEDFLVEDKKRELERLAIEEAERRRQAEEQWRREEEREADEADKVQTKVEVEIKKKKLHNVLGLARPSIDNLWYIEPVVTRQRAAVRLYYNRSSRPLVHSTEIWMHGGYNNWIDGLSFSERLVHLDDKDGDWWYADVVLPERTFVLDWVFADGPPGNARNYDNNAWQDFHAILLNNMTEEEYWVEEEQQIYRRLQQERRERKDSIKRKAERTAKMKDEMKKKTTKMFLLSQKHIVYTEPLEIRAGTTVDVLYNPSNTVLTGKLEVWFRCSFNRWMHPGGVLTPQKMVKVENGSHLKATVNVPRDAYMMDFVFSEFEEGGIYDNRNGLDYHIPVFGSTAKEPPIHIVHIAVEMAPIAKVGGLADVVTSLSRAVQDLGHNVEVILPKHDCLNLSNVKNLHMHQSFSFGGSEIKVWCGLVEDLCVYFLEPQNGLFGVGCVYGRNDDLRFGFFCHSALEFLLQSGSSPHILHCHDWSSAPVAWLYKEHYAQSSLTNARVVFTIHNLEFGAHYIGKAMRYCDKATTVSNTYSREVSGHGAIAPHLGKFHGILNGIDPDIWDPYNDNFIPVHYTSENVVEGKSAAKKALQQKLGLQQNDVPIVGIVTRLTAQKGIHLIKHAIQRTLEWNGQVVLLGSAPDPRIQGDFVNFANTLHGVNYGRVRLCLTYDEPLSHLIYAGSDFILVPSIFEPCGLTQLVAMRYGAIPIVRKTGGLYDTVFDVDSDKERAWARGLEPNGFSFDGADSRGVDYALNRAISAWFDARSWFHSLCKRVMEQDWSWNRPALDYIELYHSASKL", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD2MD3M37D3M9D2M54D7M30D7M24D3M10D3MDM34DM6DM13D4MD27M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M2D5M7D11M7D5M9D10M145D5M2D5M38D4M25D20M30D6M30D16M25D25M103D7M7D3M85D51M10D31M54D20MD23M11D2M20D11M11DMDM8D44M5D89M2D13M7D35MDMD13M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM462DM352D", "taxon_id": 4555, "taxon_name": "Setaria italica", "assembly": "JGIv2.0", "representative": { "id": "Si015393m.g", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 624, "end": 709, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 799, "end": 890, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 961, "end": 1050, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1060, "end": 1247, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 32, 253, 853, 924, 1015, 1073, 1109, 1146, 1180, 1237, 1280, 1341, 1385, 1423, 1464 ] }, { "node_id": 425861, "distance_to_parent": 0.042909, "left_index": 1598, "right_index": 1599, "protein_stable_id": "Si013121m", "gene_stable_id": "Si013121m.g", "gene_description": "Uncharacterized protein", "sequence": "MEMALLPRSPLCSRGRSAPVVRPTTLDGGSAQPFLRTSGFARSRIIWCTVASSDCPNRKSRKMVYPKVKLTAFSGYVPRLPAESSTEKSEHHDSDEGDGIYNRLLSTDIEGLETAEVDLPENASSSSAYGEVDVAEEAALDMVEVELSRNALTNMSLGEVEAVDEAAVEEDKFAVDLSGIELSIAAVCELDPKDEAKAKEDIFMAVESSDETSDVENEQWQYPALPSTSIEDKANNETHGSLKPQSMPLVRVQEQGKSIVGVPEQIQSIVVYRKPDQSIVASHRKDESIAVVPEQIQSVVGYSKPDQSIVGVPDQIKSIVGYSKVEQSVVHIPKEEQSVVGFPKQDLSIVGTTKESQTKKLDFPGSHHAFRTEGVEAKEGDYTPQKPDGDMLHAKSDVDDLLQKHKKDFSEEESETITSIEEQINTSMEEEQCIVTEEGIPEVEDEMETGEDRFLHQLSEEESSWAEDEVETTEDEEQYEVEESSFVSAEQDTQESPQDYLDPQALQRMLQELAEKNYSLGNKLFVFPEVLKADSTIDLYFNRDLSSLANEPDVLIKGAFNGWRWKFFTEKLHKSELGGDWWSCKLYIPKEAYRLDFVFFNGRTMYENNGRKDFVIPIESTMDEHSFADFLVEEKQRELEREAQRKSQTEEQQRLEEERAANEADRAQAKAEVQTQKIKLQNVLDSAKASVDNLWYIEPITTMQGATVRLYYNRHSRPLVHSTEIWMHGGYNNWIDGLSFSERLVHIDDKDGDWWYADVALPQRAYVLDCVFADGPPGNARNYDNNGRQDFHAILPNSIMTEEGYWVEEEQRIYTRIQRERREREEAIKMKAERRAKMKAEMREKTMRMFLVSQKHIVYTEPLEIRAGTTVDVLYNPSNTVLKGKPEVWFRCSFNRWMHPGGVLPPQKMVKAEHGSHLKATVNVPHDAYIMDFVFSESEEGGIFDNRNGLDYHIPVFGSIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKHDCLNLSNVKNLHIHQNFSWDGSEIKVWRGLVEDLCVYFLEPQNGMFGVGCVYGRNDDRRFGFFCHSALEFLHQRGSSPNIIHCHDWSSAPTAWLYKENYVQSSLANARVVFTIHNLEFGAHHIGKAMKYCDKATTVSNTYSREVSGHGAIAPHLGKFYGILNGIDQDIWDPYSDSFIPVQYTSENVVEGKRAAKRALQQKFGLQQNDVPIVGIISRLTAQKGIHLIKHAIQRTLERNGQVVLLGSAPDPRIQGDFTNLAHDLQNQNHGRARLCLTYDEPLSHLIYAGSDFILVPSIFEPCGLTQLVAMRYGAIPIVRKTGGLYDTVFDVDNDKDRARARGLEPNGFSFDGADSNGVDYALNRAITSWFDARDWFHSLCKRVMEQDWSWNRPALDYIELYRSASKL", "cigar": "193DM237D3M94DM80D5M19D2M57D3M447D4M12D3MD3M12D2M26D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D5MD7M15D10M7D5M9D17M145D3M40D4M25D20M30D6M30D16M25D18M14D8M70D3M40D42M117D10M54D20MD14M41D12M11DMDM8D15M10D19M5D70M10D68MD13M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D11M5D4M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D55M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM462DM352D", "taxon_id": 4555, "taxon_name": "Setaria italica", "assembly": "JGIv2.0", "representative": { "id": "Si013121m.g", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 534, "end": 619, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 705, "end": 796, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 868, "end": 957, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 967, "end": 1154, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1213, "end": 1337, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 32, 54, 759, 831, 922, 980, 1016, 1053, 1087, 1144, 1187, 1248, 1292, 1330, 1371 ] } ], "representative": { "id": "Si013121m.g", "score": 0.042909 } } ], "representative": { "id": "Si013121m.g", "score": 0.045997 } }, { "node_id": 4738259, "distance_to_parent": 0.014412, "left_index": 1526, "right_index": 1595, "taxon_id": 359160, "taxon_name": "BEP clade", "node_type": "speciation", "bootstrap": 97, "children": [ { "node_id": 4738260, "distance_to_parent": 0.074479, "left_index": 1549, "right_index": 1594, "taxon_id": 147380, "taxon_name": "Oryzeae", "node_type": "speciation", "bootstrap": 98, "children": [ { "node_id": 425995, "distance_to_parent": 0.054421, "left_index": 1592, "right_index": 1593, "protein_stable_id": "LPERR08G05100.1", "gene_stable_id": "LPERR08G05100", "sequence": "MEMALRPQSLLCPQRRPTLIIRPVSSASGRGLTQHPRDRPNRKSKRSISLHTEVTSPSGYAPRITAELSIQEREHINSDEETFDTYNRLLQTEATQWKELDTTETDLSGYVSSSSMIKVDAAGESKLDTLEDDLPTNLLNNATIGKVDVVGEAGAKEYEFEVDLSTLRNVAIRKMDAVEETETGNDLFEVDLSLLHSTAVGKVDVVDGTKAKEDLLEMDSLALHYVAMGKLDAVDATGAEGDIFEVDLSAVASNNSLEETVNVMDKAKAIEDTLQVDFLGNATSSSTYGEVAAIDDVWRNEVKLEVDTLGNTSSTAKYGSVDGVYESWFDEVTFKVDLSENVSNNTTYGRTDVMDESSADDDTFEVDFLRNASSSSEYGKVDVVDEAHTDSFTSEVVLPEDDSNNTMHGKIHVVSEAWDDEAIFEADLFGNVYNEIYGKVNVFNEAQADDATSEVDLLGNAQTSEATFEVDLFGKALSSAINKEVVVMSEPQDSEVNIGLSRNASRTEIEKEANVFDEARVEDETFDMHLLGKVITTDYADEDVVEEGTKHHKYPILSSKSIESKTTDETPISLKPKLVSVVKVQEQDKPILSVYQQEGSVFNLHAKNQPMVDFHEHEQMVTTFDEHKESVAKLSKEGQRIASLPQPSLSIDDFQRKNQPTTEFPFQLQSIVSSPAKDQSIVGFYGQNQSIISSHKQEKSIMGVPKKIQSIVGSTKHDHSIVSFHEQERSIVSVPEKKQAIVGFRKQDLSIVAVSEQNLSIVSISRENQSKQVHIVQRHGPLHLKEVEPKAEEDNLPHMLFKEELLQVEDESRVIAYENQHKADVISLSPDIQESPQDNIDPEELRRMIQELADQNCSMGNKLFIFPESVKANSTIDLYLNRSLSALANEPDVHIKGGFNSWRWKPFTERLHKSELGGDWWSCKLQIPKEAYRLDFVFFNGRLVYDNNDNNDFVLQVESKMDEDSFEKFLIEEKKRELERLASEEAERKRLAEEQQRMGEEMVAEQAARAQAKKEVELKKNKLQNMLSSARTYVDNLWHIEPSTYGQGDTVRLYYNRSSRPLMHSGEIWMHGGCNSWTDGLSIVERLVECDDEDGDWWYANVNIPEKAFVLDWVFADGPPGNARNYDNNGRQDFHAILPNVMTTEEFWVEEEQCIYRRLLQEWRERVEAVKRKAEKRAKLKSEMKEKSMRMFLLSQKHIVYTEPLELRAGTTVDVLYNPSKTVLNGKPEVWFRWSFNRWMHGVSPPKKMVKAEDGCHLKATVSVPLDAYMMDFVFSELEEGGIYDNRNGTDYHIPVYGSNAKEPPIHIVHIAVEMAPIAKVGGLADVVTSLSRAIQELGHNVEVILPKYNFMNQSNVKNLHVRQSFSWGGTEIKVWHGLVEDLSVYFLEPQNGMFGVGSVYGGNDAGRFGFFCRSALEFLLQSGSSPYIIHCHDWSSAPVAWLYKEHYANSRLASARIVFTIHNLEFGAHHIGKAMTYCDKATTVSHTYSKEVAGHGAIAPHRGKFYGILNGIDPDIWDPYTDNFIPVHYTSENVVEGKSAAKRALQQRLGLQQTDVPIVGIITRLTAQKGIHLIKHAIHRTLERNGQVVLLGSAPDPRIQGDFCRLADSLHGENHGRVKLCLTYDEPLSHMIYAGSDFILVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLYDTVFDVDHDKDRARVQGLEPNGFSFDGADSNEQSLLGLKPVIGSTPSAKG", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD7M36D3M9D2M136D2MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M12D13M7D5M9D10MD149M2D5M4D162MD2M25D24M15D24M19D48M6D13M2D49M20D42M17D2M10D31M34D5M10D25MD23M31D13M11DMDM8D15M20D9M5D31M80D34M4D13M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D41M2D14MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M12D5M15DM28D3M4D6M2194D", "taxon_id": 77586, "taxon_name": "Leersia perrieri", "assembly": "Lperr_V1.4", "representative": { "id": "LPERR08G05100", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 873, "end": 958, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1048, "end": 1139, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1210, "end": 1297, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1307, "end": 1494, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1555, "end": 1676, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 34, 38, 1102, 1173, 1262, 1320, 1356, 1393, 1427, 1484, 1527, 1588, 1632, 1670, 1704 ] }, { "node_id": 4738265, "distance_to_parent": 0.00964, "left_index": 1550, "right_index": 1591, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 98, "children": [ { "node_id": 425738, "distance_to_parent": 0.045364, "left_index": 1589, "right_index": 1590, "protein_stable_id": "OB08G15430.1", "gene_stable_id": "OB08G15430", "gene_description": "Uncharacterized protein", "sequence": "MEMALRPQSLLCPRSRPTFIIRPASNTRGGGLAQYFLVTGRYNGSRIVRCMVSSSDCPNRKPKRVISLHTEVTSSRGYAPRITAESSIQEREHINSDDETFETYNRLLHTEATDWKKIDTTEVDSSQDVSSSSMTKVDAAGEAKVDILDDDLNGNLLSNVTMGEVDLVDEAGVEEDIFEVDLSALHNTTVGKMDAVNGTETEMDLSALHSVAVGNVDVVDGAKAKEDLFEMDSLPLHNVTVGKVNAVDATGAEGDIFEVDLSALASNKSMIEAVNVMDEAKAIEDMLEVDLLGNTINSSAYGEVKFEVDSARNTSSASMYGAVDGIYESRSNELTFNVDSSENASDNATYGRTDVVDERWADGDTFKVDFLRNSSSGAEYGKVDEAQIDDFTFEVDSLGKDSDNAMHGEVHLVGEDWDDEAIFEVDLFGNVSNNAVYGEVNVLDEARVDDAMFDVDLLWNASSNSTHEEVDVVDEAQTGESTFEMDLFGNALRSAAYKEVVVMGKPQDDEVDVDVSRNASSTETVKEVDTVSEAGVEDKIFDMDLLGKQITINSMDDDVVEEGTQHIEYPILSSTSIEGKTLDETSASLKPEFMSVVKIQEQDKPNFSVHRQEGSISLNAENQSMIDFHEQEQMVITFDKQKEPAVNLSKEDQQIANFPEQNLSVDGFNRKNQSIIGLPFQYQSNVGSPEKDQSILGFHGQNQSIISSHKQDKSIVGVPKKIQTIVGATKHDHSIVGVHKQNRSIVSVPEQKQSIVGFRKQDLSIVAISEQNLSIVAISRESQSKQLSIVQRHDPLHLKEVETKDRDDTSKKFHENTLHVKFEEELSQVEDEERAVAYEKQHEAVMISLSPDIQESPQDNVDPQELRRMLQELAGQNCSMGNKLFVFPETVKANSTIDLYLNRNLSALANEPDVHIKGAFNSWRWRPFTERLHKSELNGDWWSCKLQIPKEAYRLDFVFFNGRLVYDNNDNNDFVLQVESTMDEDSFEEFLVEEKQRELERLATEEAERRRHAEEQQLMGEQRASELAAREQAKKEVELKKNKLRTMLSLAGRHVDNLWHIKPITYGQGDTVRLYYNRNSRPLMQSTEIWLHGGCNSWTDGLSIVEKLVECDDENGDWWYANVNIPENAFVLDWVFADGPPGNARNYDNNGRQDFHAILPNAMTTEEYWVEEENRIYTRLFQEIREREEAIKKKAEKRAKMKSEMKEKTMRMFLLSQKHIVYTEPLEVRAGTTVDILYNPSNTALNGKPEVWFRWSFNRWTHPSGVLPPKKMVKVEDGCHLKAIVSVPSDAYMMDFVFSESEEGGVFDNRNGTDYHIPVSGSNAKEPPIHIVHIAVEMAPIAKVGGLADVVTSLSRAIQELGHNVEVILPKYNFMNQSNVKNLHVRQSFSWGGTEIKVWFGLVEDLSVYFLEPQNGMFGVGYVYGGGDAGRFGFFCQSALEFLLQRGSSPYIIHCHDWSSAPVAWLYKEHYAESRLANARIVFTIHNLEFGAHFIGKAMTYCDKATTVSHTYSKEVAGHGAIAPHRGKFYGILNGIDPDIWDPYTDNFIPMHYTSENVVEGKNAAKRALQQRFGLQQTDVPIVGIITRLTAQKGIHLIKHALHRTLERNGQVVLLGSAPDPRIQSDFCRLADSLHGENHGRVKLCLTYDEPLSHLIYAGSDFILVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLYDTVFDVDHDKDRARVKGLEPNGFSFDGADSNGVDYALNRAISSWFEARDWFHSLCKRVMEQDWSWNRPALDYIELYHSAHKF", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD7M36D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M12D13M7D5M9D10MD65M5D79M2D5M4D17M11D82M3D52M25D63M19D48M6D13M2D49M20D7MD34M17D2M10D31M34D5M10D25MD23M31D13M11DMDM8D15M20D9M5D37M9DM64D34M4D13M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM310DM504D", "taxon_id": 4533, "taxon_name": "Oryza brachyantha", "assembly": "Oryza_brachyantha.v1.4b", "representative": { "id": "OB08G15430", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 894, "end": 979, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1069, "end": 1160, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1231, "end": 1320, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1330, "end": 1517, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1577, "end": 1700, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 34, 56, 823, 1123, 1194, 1285, 1343, 1379, 1416, 1450, 1507, 1550, 1611, 1655, 1693, 1734, 1778 ] }, { "node_id": 4738270, "distance_to_parent": 0.022233, "left_index": 1551, "right_index": 1588, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 70, "children": [ { "node_id": 426024, "distance_to_parent": 0.007886, "left_index": 1586, "right_index": 1587, "protein_stable_id": "OPUNC08G05170.1", "gene_stable_id": "OPUNC08G05170", "sequence": "MEMALRPQSLLCPRSRPKLVIRPVSSASGGGLAQYFLMTRRYTGSTIVRCMVSSSDCPNRKLKRRISLHMEVTSRGYAPRIAAESSIQEREHINSDEETFDTYNRLLHNESTEWKKLDTTEVDLSQDVSSSSMRKVDAAGEAKLDILEDDLPRNLLNGVTMGEVDVVDEAGAEDDVFEVDLSALHNSTVEKMDAVNEVETENDLFEVDLSALHSAAVGKVDVVDGAKAKEDLFEMDSLALHSVTMGKVDAVDAAGAEGDIFEVDLSAVASNNSMIEAVNVMDEAKAIKDTLEVDLSGNATSSSTYGEVKFEVDSLGNTSSTGMYESVDGVYEPWSGEVTFKVDSSENASNNTTCGRADVVDGSWADEDIFEVDFLTNASSGAEYGKVDVVDEAQTDDFTFEVDSLEKNSNNKMHGKVHMMDESWDDESIFEVDLFGNASSSPIYGEVNVLDEARADDATFEVDLLGNISSNSTHEEVDVVDEAQTGEATFEVNLLANALSSVIYKEVSVMGGAQDDEVDVDFSRNVPVMGGAQDDEVDVDFSINASNTETEKEADAVDEARVEDETFDMDLVGKQITIDSMNDDVVEEGTKHHKYPILSSAFIEVKTIDETPVSLKPELMSVVMDQEQDNPISSVYQQEGSIFNLHAENQSMVDFHEWEQMAITFDKQKESVTKLSKEDQQTAGLPEQNISFDGVHRKNQSIIGLPFQHQSIVSSPEKDRSIVGFHGQNQSIISSHKQDNSIVGIPKKIQSIVGSTKHDHSVVGFQKQDRSIVSVPEQKQSIVCFHKQDLSIVSVSEQNLSIVAIPRESQSKQVSIVRRHDPVHLKEVETMDRVDISQKSGGDDDLAHMLFGDLSQVEDEARANAYKKQHEVDVISLSPDIQESPQDNIDPQELRRMLQELADQNCSMGNKLFVFPEAVKANSTIDVYLNRNLSALANEPDVHIKGAFNNWRWRPFTERLHKSELSGDWWSCKLNIPKEAYRLDFVFFNGRLVYDNNDSNDFVLQVESTMDEDSFEDFLAEEKKRELERVAIEEAERRRHAEEQQQMGEQRAAEQAAREQAKKEIELKKNKLKNLLSSARTHVDNLWHIEPSTYGQGDTVRLYYNRNSRPLMHSTEIWMHGGCNSWTDGLSIVERLVECDDENGDWWYANVHVPEKAFVLDWVFADGPPGNARNYDNNGRQDFHAILPNVMTTEEYWVEEENCIYTRLLHEIREREKAIKIKVEKRAKMKSEMKEKTMRMFLLSQKHIVYTEPLEIRAGTTVDVLYNPSNTVLNGKPEVWFRWSFNRWMHPSGVLPPKKMVKAEDGCHLKATVSVPSDAYMMDFVFSESEEGGIYDNRNGTDYHIPVSGSNAKEPPIHIVHIAVEMAPIAKVGGLADVVTSLSRAIQELGHHVEVILPKYNFMNQSNVKNLHVRQSFSLGGTEIKVWFGLVEDLSVYFLEPQNGMFGGGWVYGGNDAGRFGLFCQSALEFLLQIGSSPHIIHCHDWSSAPVAWLYKEHYAESRLANARIIFTIHNLEFGAHFIGKAMTYCDKATTVSHTYSKEVAGHGAIAPHRGKFYGILNGIDPDIWDPYTDNFIPMHYTSENVVEGKNAAKRALQQRFGLQQTDVPIVGIITRLTAQKGIHLIKHALHRTLERNGQVVLLGSAPDPRIQSDFCRLADSLHGENHGRIYAGSDFILVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLYDTVFDVDHDKDRARVLGLEPNGFSFDGADSNEQSLLGLKPVVGSTPSAKGSWSKTGPGTGLPWTTLNCIIQLTNFEAHPTVTGESKALHW", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD7M36D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M9D2MDM30D2M26D7M4DM51D9M28D13M12D13M7D5M9D10MD149M2D5M4D17M11D137M25D130M6D13M2D49M20D42M17D2M10D31M34D5M10D25MD23M31D13M11DMDM8D15M20D9M5D40M71D9MD24M4D13M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DM37D4M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M12D5M15DM28D3M4D33M22D12M81DM2051D", "taxon_id": 4537, "taxon_name": "Oryza punctata", "assembly": "AVCL00000000", "representative": { "id": "OPUNC08G05170", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 922, "end": 1007, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1097, "end": 1188, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1259, "end": 1348, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1358, "end": 1545, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 34, 56, 1151, 1222, 1313, 1371, 1407, 1444, 1478, 1535, 1578, 1639, 1669, 1707, 1741 ] }, { "node_id": 4738273, "distance_to_parent": 0.008029, "left_index": 1552, "right_index": 1585, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "dubious", "bootstrap": 57, "duplication_confidence_score": 0, "children": [ { "node_id": 4738285, "distance_to_parent": 0.02323, "left_index": 1563, "right_index": 1584, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 93, "children": [ { "node_id": 425957, "distance_to_parent": 0.004769, "left_index": 1582, "right_index": 1583, "protein_stable_id": "OMERI08G05080.1", "gene_stable_id": "OMERI08G05080", "gene_display_label": "OMERI08G05080", "sequence": "MEMALRPQSLLCPRSRLKVVIRPASSASGGGLAQYFLMTRRYTGSRIVRCMVSSSDCPNRKAKRTISLHTEVASSRGYAPRIAAESSIQEREHINSDEETFDTYNRLLHNESTEWKKLDTTEVDLSQDVSSSSMRKLDATDEAKLDILEDDLPRNLLNGVTMGEVDMLDEAGAEDDVFEVDLSALHNSTVGKMDAVNEVGTENDLFEVDLSALHSAAVGKVDVVDGAKAKEDLFEMDSLALHSVTMGKVDAIDAAGAEGDKFEVDLSALASNNSMIEAVNVMDEAKAIEDTLEVDLSGNATSSSTYGEVKFEVDSLGNTSSTVMYGPAGGVYEPQSDEVTFKVDSSENASNNVIYGRADVVDESWADEGIFEVDFFTNASSGAEYGKVDVVDEAQTDDFTFEVDSLEKDSNNKMHGKAHMVDEAWDDEAIFEVDLFGNASSIPIYGEVNVLDEARADDAKFEVDLLGNTSSNSTHEEVDVVDEAQTGEATFEVDLLGNALSSAIYKEVPVMGGAQDDEVDVDFSINASITETEKEADAVDEARVEDETFDMDLVGKQISIDSMNDDVVEEGTKHHKYPMLSSAFIEVKTIHETPVSLKPELMSVVMDQEQDKPISSVYQQEGSIFNLHAENQSTVDFHEREQMAITFDKQKESVDKLSKEDQQTAGLPEQNQQTAGLPEQNMSFDGVHRKSQSIIGLPFQHQSIVSSPEKDRSIVGFHGQNQSIISSHKQDKSIVGVPKKIQSIVGSTKHDDSVVGFHKQDRSIVSVPEQKQSIVGFHKQDLSIVAVSEQNLSIVAIPRESQSKQISIVRRHDSLHLKEVETKDRDGISKKSGGDDDLPHMLFEEELSQVEDEARAIAYKKQHEVDVISLTPDIQESPQDNIDPQELRRMLQELADQNCSMGNKLFVFPEAVKANSTIDVYLNRNLSALANEPDVHIKGAFNSWRWRPFTERLHKSELSGDWWSCKLHIPKEAYRLDFVFFNGRLVYDNNDSNDFVLQVESTMDEDSFEEFLVEEKKRELERVATEEAERRRHAEEQQRMGEQRAAEQAAREQAKKEIELKKNKLQNLLSSARTHVDNLWHIEPSTYRQGDTVRLYYNRNSRPLMHSTEIWMHGGCNSWTDGLSIVERLVECDDENGDWWYANVHIPEKAFVLDWVFADGPPGNARNYDNNGRQDFHAILPNAMTNEEYWVEEENCIYTRLLHEIREREEAIKIKVEKRAKMKSEMKEKTMRMFLLSQKHIVYTEPLEIRAGTTVDVLYNPSNTVLNGKPEVWFRWSFNRWMHPSGVLPPKKMVKTEDGCHLKATVSVPSDAYMMDFVFSESEEGGIYDNRNGTDYHIPVSGSNAKEPPIHIVHIAVEMAPIAKVGGLADVVTSLSRAIQELGHHVEVILPKYNFMNQSNVKNLHVHQSFSLGGTEIKVWFGLVEDLSVYFLEPQNGMFGGGWVYGGNDAGRFGLFCQSALEFLLQSGSSPHIIHCHDWSSAPVAWLYKEHYAESRLATARIIFTIHNLEFGAHFIGKAMTYCDKATTVSHTYSKEVAGHGAIAPHRGKFYGILNGIDPDIWDPYTDNFIPMHYTSENVVEGKNAAKRALQQRFGLQQTDVPIVGIITRLTAQKGIHLIKHALHRTLERNGQVVLLGSAPDPRIQSDFCRLADSLHGENHGRIYAGSDFILVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLYDTVFDVDHDKDRARVLGLEPNGFSFDGADCNEQSLHGLKPAVGSTPSAKGSWSKTGPGTGLPWTTLNCTIQLTNFEAPIQRWQEKASIGRYYKLNETWLKVKIFYLSCRYKLTQTWFKVKIFYLSYTYIYAE", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD7M36D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M12D13M7D5M9D10MD149M2D5M4D17M11D137M25D63M19D48M6D13M2D49M20D42M17D43M34D5M10D25MD23M31D13M11DMDM8D15M20D9M5D40M71D34M4D13M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DM37D4M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M12D5M15DM28D3M4D35MDM15D24M30D5M10D2M17D4M4D10M16DM3DM22D2M578DM255DM195DM966D", "taxon_id": 40149, "taxon_name": "Oryza meridionalis", "assembly": "Oryza_meridionalis_v1.3", "representative": { "id": "OMERI08G05080", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 915, "end": 1000, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1090, "end": 1181, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1252, "end": 1341, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1351, "end": 1538, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 34, 56, 1144, 1215, 1306, 1364, 1400, 1437, 1471, 1528, 1571, 1632, 1662, 1700, 1734 ] }, { "node_id": 4738293, "distance_to_parent": 0, "left_index": 1564, "right_index": 1581, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 22, "children": [ { "node_id": 425938, "distance_to_parent": 0, "left_index": 1579, "right_index": 1580, "protein_stable_id": "OGLUM08G05570.2", "gene_stable_id": "OGLUM08G05570", "sequence": "MEMALRPQSLLCPRSRLKVVIRPASSASGGGLAQYFLMTRRYTGSRLVRCMVSSSDCPNRKAKRTISLHTEVASSRGYAPRIAAESSIQEREHINSDEETFDTYNRLLHNESTEWKKLDTTEVDLSQDVSSSSMRKVDATDEAKLDILEDDLPRNLLNGVTMGEVDMLDEAGAEDDVFEVDLSALHNSTVGKMDAVNEVGTENDLFEVDLSALHSAAVGKVDVVDGAKAKEDLFEMDSLALHSVTMGKVDAINAAGAEGDKFEVDLSALASNNSMIEAVNVMDEAKAIEDTLEVDLSGNATSSSTYGEVKFEVDSLGNTSSTVMYGPADGAYEPRSDEVTFKVDSSENALNNVMYGRADVVDESWADEGIFEVDFFTNASSGAEYGKVDVVDEAKTDDFTFEIDSLEKDSNNKMHGKAHMVDEAWDDEAIFEVDLFGNASSIPIYGEVNVLDEARADDGKFEVDLLGNTSSNSTHEEVDVVDKAQTGEATFEVDLLGNALSSAIYKEVPVMGGAQDDEVDVDFSINASITETEKEADAVDEARVEDETFDMDLVGKQISIDSMNDDVVEEGTKHHKYPMLSSAFIEVKTIHETPVSLKPELMSVVMDQEQDKPISSVYQQEGSIFNLHAENQSTVDFHEREQMAITFDKQKESVAKLSKEDQRTAGLPEQNMSFDGVHRKSQSIIGLPFQHQSIVSSPEKYQSIVGFHGQNQSIISSHKQDKSIVGVPKKIQSIVGSTKHDDSIVGFHKQDRSIVSVPEQKQSIVGFHKQDLSIVAVSEQNLSIVAKPRESQSKQISIVRRHDPLHLKEVETKDRDGISKKSGGDDDLPHMLFEEELSQVEDEARAIAYKKQHEVDVISLTPDIQESPQDNIDPQELRRMLQELADQNCSMGNKLFVFPEAVKANSTIDVYLNRNLSALANEPDVHIKGAFNSWRWRPFTERLHKSELSGDWWSCKLHIPKEAYRLDFVFFNGRLVYDNNDSNDFVLQVESTMDEDSFEEFLVEEKKRELERVATEEAERRRHAEEQQRMGEQRAAEQAAREQAKKEIELKKNKLQNLLSSARTHVDNLWHIEPSTYRQGDTVRLYYNRNSRPLMHSTEIWMHGGCNSWTDGLSIVERLVECDDENGDWWYANVHIPEKAFVLDWVFADGPPGNARNYDNNGRQDFHAILPNAMTNEEYWVEEENCIYTRLLHEIREREEAIKIKVEKRAKMKSEMKEKTMRMFLLSQKHIVYTEPLEIRAGTTVDVLYNPSNTVLNGKPEVWFRWSFNRWMHPSGVLPPKKMVKTEDGCHLKATVSVPSDAYMMDFVFSESEEGGIYDNRNGTDYHIPVSGSNAKEPPIHIVHIAVEMAPIAKVGGLADVVTSLSRAIQELGHHVEVILPKYNFMNQSNVKNLHVRQSFSLGGTEIKVWFGLVEDLSVYFLEPQNGMFGGGWVYGGNDAGRFGLFCQSALEFLLQSGSSPHIIHCHDWSSAPVAWLYKEHYAESRLATARIIFTIHNLEFGAHFIGKAMTYCDKATTVSHTYSKEVAGHGAIAPHRGKFYGILNGIDPDIWDPYTDNFIPMHYTSENVVEGKNAAKRALQQRFGLQQTDVPIVGIITRLTAQKGIHLIKHALHRTLERNGQVVLLGSAPDPRIQSDFCRLADSLHGENHGRIYAGSDFILVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLYDTVFDVDHDKDRARVLGLEPNGFSFDGADCNEQSLLGLKPAVGSTPSAKGSWSKTGPGTGLPWTTLNCTIQLTNFEAPIQRWQEKASIGRYYKLNETWLKVKIFYLSCRYKLTQTWFKVKIFYLSYTYICRIKTLYSMHKQLWEYVSAMFPVLSFNYEYLI", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD7M36D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M12D13M7D5M9D10MD149M2D5M4D17M11D137M25D63M19D48M6D13M2D49M20D42M17D2M10D31M34D5M10D25MD23M31D13M11DMDM8D15M20D9M5D40M71D34M4D13M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DM37D4M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M12D5M15DM28D3M4D35MDM15D24M30D5M10D2M17D4M4D10M16DM3DM22D6M14DM218DM340DM255DM195D2M149DM74DM71D4M97DM39DM15D9M147D5M351D", "taxon_id": 40148, "taxon_name": "Oryza glumipatula", "assembly": "ALNU02000000", "representative": { "id": "OGLUM08G05570", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 905, "end": 990, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1080, "end": 1171, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1242, "end": 1331, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1341, "end": 1528, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 34, 56, 1134, 1205, 1296, 1354, 1390, 1427, 1461, 1518, 1561, 1622, 1652, 1690, 1724 ] }, { "node_id": 4738296, "distance_to_parent": 0, "left_index": 1565, "right_index": 1578, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4738308, "distance_to_parent": 0, "left_index": 1572, "right_index": 1577, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 6, "children": [ { "node_id": 425755, "distance_to_parent": 0.00095, "left_index": 1575, "right_index": 1576, "protein_stable_id": "ONIVA08G05260.2", "gene_stable_id": "ONIVA08G05260", "sequence": "MEMALRPQSLLCPRSRLKVVIRPASSASGGGLAQEIYWKQNCSMHGFKFRKAKRTISLHTEVASSRGYAPRIAAESSIQEREHINSDEETFDTYNRLLRNESTEWNKLDTTEVDLSQDVSSSSMRKVDATDEAKLDILEDDLPRNLLNGVTMGEVDMLDEAGAEDDVFEVDLSALHNSTVGKMDAVNEVGTENDLFEVDLSALHSAAVGKVDVVDEAKAKEDLFEMDSLALHSVTMGKVDAINAAGAEGDKFEVDLSALASNNSMIEAVNVMDEAKAIEDTLEVDLSGNATSSSTYGEVKFEVDSLGNTSSTVMYGPADGAYEPRSDEVTFKVDSSENASNNVMYGRADVVDESWADEGIFEVDFFTNASSGAEYGKVDVVDEAKTDDFTFEIDSLEKDSNNKMHGKAHMVDEAWDDEAIFEVDLFGNASSIPIYGEVNVLDEARADDGKFEVDLLGNTSSNSTHEEVDVVDEAQTGEATFEVDLLGNALSSAIYKEVPVMGGAQDDEVDVDFSINASITETEKEADAVDEARVEDETFDMDLVGKQISIDSMNDDVVEEGTKHHRYPMLSSAFIEVKTIHETPVSLKPELMSVVMDQEQDKPISSVYQQEGSIFNLHAENQSTVDFHEREQMAITFDKQKESVAKLSKEDQQTAGLPEQNMSFDGVHRKSQSIIGLPFQHQSIVSSPEKYRSIVGFHGQNQSIISSHKQDKSIVGVPKKIQSIVGSTKHDDSIVGFRKQDRSIVSVPEQKQSIVGFHKQDLSIVAVSEQNLSIVAIPRESQSKQISIVRRHDPLHLKEVETKDRDGISKKSGGDDDLPHMLFEEELSQVEDEARAIAYKKQHEVDVISLTPDIQESPQDNIDPQELRRMLQELADQNCSMGNKLFVFPEAVKANSTIDVYLNRNLSALANEPDVHIKGAFNSWRWRPFTERLHKSELSGDWWSCKLHIPKEACRLDFVFFNGRLVYDNNDSNDFVLQVESTMDEDSFEEFLVEEKKRELERVATEEAERRRHAEEQQRMGEQRAAEQAAREQAKKEIELKKNKLQNLLSSARTHVDNLWHIEPSTYRQGDTVRLYYNRNSRPLMHSTEIWMHGGCNSWTDGLSIVERLVECDDENGDWWYANVHIPEKAFVLDWVFADGPPGNARNYDNNGRQDFHAILPNAMTNEEYWVEEENCIYTRLLHEIREREEAIKIKVEKRAKMKSEMKEKTMRMFLLSQKHIVYTEPLEIHAGTTVDVLYNPSNTVLNGKPEVWFRWSFNRWMHPSGVLPPKKMVKTEDGCHLKATVSVPSDAYMMDFVFSESEEGGIYDNRNGTDYHIPVSGSNAKEPPIHIVHIAVEMAPIAKVGGLADVVTSLSRAIQELGHHVEVILPKYNFMNQSNVKNLHVRQSFSLGGTEIKVWFGLVEDLSVYFLEPQNGMFGGGWVYGGNDAGRFGLFCQSALEFLLQSGSSPHIIHCHDWSSAPVAWLYKEHYAESRLATARIIFTIHNLEFGAHFIGKAMTYCDKATTVSHTYSKEVAGHGAIAPHRGKFYGILNGIDPDIWDPYTDNFIPMHYTSENVVEGKNAAKRALQQRFGLQQTDVPIVGIITRLTAQKGIHLIKHALHRTLERNGQVVLLGSAPDPRIQSDFCRLADSLHGENHGRIYAGSDFILVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLYDTVFDVDHDKDRARVLGLEPNGFSFDGADCNEQSLLGLKPAVGSTPSAKGSWSKTGPGTGLPWTTLNCTIQLTNFEAPIQRWQEKASIGRYYKLNETWLKVKIFYLSCRYKLTQTWFKVKIFYLSYTYICRIKTLYSMHKQLWEYVSAMFPILSFNYEYLI", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD7M36D3M9D3M52D8M30D6M128D2M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M12D13M7D5M9D10MD149M2D5M4D17M11D137M25D63M19D48M6D13M2D49M20D42M17D2M10D31M34D5M10D25MD23M31D13M11DMDM8D15M20D9M5D40M71D34M4D13M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DM37D4M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M12D5M15DM28D3M4D35MDM15D24M30D5M10D2M17D4M4D10M16DM3DM22D6M14DM218DM340DM255DM195D2M149DM74DM71D4M97DM39DM15D9M147D5M351D", "taxon_id": 4536, "taxon_name": "Oryza nivara", "assembly": "AWHD00000000", "representative": { "id": "ONIVA08G05260", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 895, "end": 980, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1070, "end": 1161, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1232, "end": 1321, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1331, "end": 1518, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 34, 50, 1124, 1195, 1286, 1344, 1380, 1417, 1451, 1508, 1551, 1612, 1642, 1680, 1714 ] }, { "node_id": 425833, "distance_to_parent": 0, "left_index": 1573, "right_index": 1574, "protein_stable_id": "ORUFI08G05900.3", "gene_stable_id": "ORUFI08G05900", "sequence": "MEMALRPQSLLCPRSRLKVVIRPASSASGGGLAQEIYWKQNCSMHGFKFRKAKRTISLHTEVASSRGYAPRIAAESSIQEREHINSDEETFDTYNRLLHNESTEWKKLDTTEVDLSQDVSSSSMRKVDATDDAKLDILEDDLPRNLLNGVTMGEVDMLDEAGAEDDVFEVDLSALHNSTVGKMDAVNEVGTENDLFEVDLSALHSAAVGKVDVVDGAKAKEDLFEMDSLALHSVTMGKVDAINAAGAEGDKFEVDLSALASNNSMIEAVNVMDEAKAIEDTLEVDLSGNATSSSTYGEVKFEVDSLGNTSSTVMYGPADGAYEPRSDEVTFKVDSSENALNNVMYGRADVVDESWADEGIFEVDFFTNASSGAEYGKVDVVDEAKTDDFTFEIDSLEKDSNNKMHGKAHMVDEAWDDEAIFEVDLFGNASSIPIYGEVNVLDEARADDGKFEVDLLGNTSSNSTHEEVDVVDEAQIGEATFEVDLLGNALSSAIYKEVPVMGGAQDDEVDVDFSINASITETEKEADAVDEARVEDETFDMDLVGKQISIDSMNDDVVEEGTKHHKYPMLSSAFIEVKTIHETPVSLKPELMSVVMDQEQDKPISSVYQQEGSIFNLHAENQSTVDFHEREQMAITFDKQKESVAKLSKEDQQTAGLPEQNMSFDGVHRKNQSIIGLPFQHQSIVSSPEKYQSIVGFHGQNQSIISSHKQDKSIVGVPKKIQSIVGSTKHDDSIVGFHKQDRSIVSVPEQKQSIVGFHKQDLSIVAVSEQNLSIVAKPRESQSKQISIVRRHDPLHLKEVETKDRDDISKKSGGDDDLPHMLFEEELSQVEDEARAIAYKKQHEVDVISLTPDIQESPQDNIDPQELRRMLQELADQNCSMGNKLFVFPEAVKANSTIDVYLNRNLSALANEPDVHIKGAFNSWRWRPFTERLHKSELSGDWWSCKLHIPKEAYRLDFVFFNGRLVYDNNDSNDFVLQVESTMDEDSFEEFLVEEKKRELERVATEEAERRRHAEEQQRMGEQRAAEQAAREQAKKEIELKKNKLQNLLSSARTHVDNLWHIEPSTYRQGDTVRLYYNRNSRPLMHSTEIWMHGGCNSWTDGLSIVEKLVECDDENGDWWYANVHIPEKAFVLDWVFADGPPGNARNYDNNGRQDFHAILPNAMTNEEYWVEEENCIYTRLLHEIREREEAIKIKVEKRAKMKSEMKEKTMRMFLLSQKHIVYTEPLEIRAGTTVDVLYNPSNTVLNGKPEVWFRWSFNRWMHPSGVLPPKKMVKTEDGCHLKATVSVPSDAYMMDFVFSESEEGGIYDNRNGTDYHIPVSGSNAKEPPIHIVHIAVEMAPIAKVGGLADVVTSLSRAIQELGHHVEVILPKYNFMNQSNVKNLHVRQSFSLGGTEIKVWFGLVEDLSVYFLEPQNGMFGGGWVYGGNDAGRFGLFCQSALEFLLQSGSSPHIIHCHDWSSAPVAWLYKEHYAESRLATARIIFTIHNLEFGAHFIGKAMTYCDKATTVSHTYSKEVAGHGAIAPHRGKFYGILNGIDPDIWDPYTDNFIPMHYTSENVVEGKNAAKRALQQRFGLQQTDVPIVGIITRLTAQKGIHLIKHALHRTLERNGQVVLLGSAPDPRIQSDFCRLADSLHGENHGRIYAGSDFILVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLYDTVFDVDHDKDRARVLGLEPNGFSFDGADCNEQSLLGLKPAVGSTPSAKGSWSKTGPGTGLPWTTLNCTIQLTNFEAPIQRWQEKASIGRYYKLNETWLKVKIFYLSCRYKLTQTWFKVKIFYLSYTYICRIKTLYSMHKQLWEYVSAMFPILSFNYEYLI", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD7M36D3M9D3M52D8M30D6M128D2M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M12D13M7D5M9D10MD149M2D5M4D17M11D137M25D63M19D48M6D13M2D49M20D42M17D2M10D31M34D5M10D25MD23M31D13M11DMDM8D15M20D9M5D40M71D34M4D13M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DM37D4M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M12D5M15DM28D3M4D35MDM15D24M30D5M10D2M17D4M4D10M16DM3DM22D6M14DM218DM340DM255DM195D2M149DM74DM71D4M97DM39DM15D9M147D5M351D", "taxon_id": 4529, "taxon_name": "Oryza rufipogon", "assembly": "OR_W1943", "representative": { "id": "ORUFI08G05900", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 895, "end": 980, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1070, "end": 1161, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1232, "end": 1321, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1331, "end": 1518, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 34, 50, 1124, 1195, 1286, 1344, 1380, 1417, 1451, 1508, 1551, 1612, 1642, 1680, 1714 ] } ], "representative": { "id": "ORUFI08G05900", "score": 0 } }, { "node_id": 4738299, "distance_to_parent": 0, "left_index": 1566, "right_index": 1571, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 58, "children": [ { "node_id": 425845, "distance_to_parent": 0.000998, "left_index": 1569, "right_index": 1570, "protein_stable_id": "ORGLA08G0045500.1", "gene_stable_id": "ORGLA08G0045500", "gene_description": "Uncharacterized protein", "sequence": "MEMALRPQSLLCPRSRLKVVIRPASSASGGGLAQYFLMTRRYTGSRIVRCMVSSSDCPNRKAKRTISLHTEVASSRGYAPRIAAESSIQEREHINSDEETFDTYNRLLRNESTEWKKLDTTEVDLSQDVSSSSMRKVDATDEAKLDILEDDLPRNLLNGVTMGEVDMLDEAGAEDDVFEVDLSALHNSTVGKVDAVNEVGTENDLFEVDLSALHSAAVGKVDVVDGAKAKEDLFEMDSLALHSVTMGKVDAINAAGAEGDKFEVDLSALASNNSMIEAVNVMDEAKAIEDTLEVDLSGNATSSSTYGEVKFEVDSLGNTSSTVMYGPADGAYEPRSDEVTFKVDSSENASNNVMYGRADVVDESWADEGIFEVDFFTNASSGAEYGKVDVVDEAKTDDFTFEIDSLEKDSNNKMHGKAHMVDEAWDDEAIFEVDLFGNASSIPIYGEVNVLDEARADDGKFEVDLLGNTSSNSTHEEVDVVDEAQTGEATFEVDLLGNALSSAIYKEVPVMGGAQDDEVDVDFSINASITETEKEADAVDEARVEDETFDMDLVGKQISIDSMNDDVVEEGTKHHRYPMLSSAFIEVKTIHETPVSLKPELMSVVMDQEQDKPISSVYQQEGSIFNLHAENQSTVDFHEREQMAITFDKQKESVAKLSKEDQQTAGLPEQNMSFDGVHRKSQSIIGLPFQHQSIVSSPEKYRSIVGFPGQNQSIISSHKQDKSIVGVPKKIQSIVGSTKHDDSIVGFRKQDRSIVSVPEQKQSIVGFHKQDLSIVAVSEQNLSIVAIPRESQSKQISIVRRHDPLHLKEVETKDRDGISKKSGGDDDLPHMLFEEELSQVEDEARAIAYKKQHEVDIISLTPDIQESPQDNIDPQELRRMLQELADQNCSMGNKLFVFPEAVKANSTIDVYLNRNLSALANEPDVHIKGAFNSWRWRPFTERLHKSELSGDWWSCKLHIPKEAYRLDFVFFNGRLVYDNNDSNDFVLQVESTMDEDSFEEFLVEEKKRELERVATEEAERRRHAEEQQRMGEQRAAEQAAREQAKKEIELKKNKLQNLLSSARTHVDNLWHIEPSTYRQGDTVRLYYNRNSRPLMHSTEIWMHGGCNSWTDGLSIVERLVECDDENGDWWYANVHIPEKAFVLDWVFADGPPGNARNYDNNGRQDFHAILPNAMTNEEYWVEEENCIYTRLLHEIREREEAIKIKVEKRAKMKSEMKEKTMRMFLLSQKHIVYTEPLEIRAGTTVDVLYNPSNTVLNGKPEVWFRWSFNRWMHPSGVLPPKKMVKTEDGCHLKATVSVPSDAYMMDFVFSESEEGGIYDNRNGTDYHIPVSGSNAKEPPIHIVHIAVEMAPIAKVGGLADVVTSLSRAIQELGHHVEVILPKYNFMNQSNVKNLHVRQSFSLGGTEIKVWFGLVEDLSVYFLEPQNGMFGGGWVYGGNDAGRFGLFCQSALEFLLQSGSSPHIIHCHDWSSAPVAWLYKEHYAESRLATARIIFTIHNLEFGAHFIGKAMTYCDKATTVSHTYSKEVAGHGAIAPHRGKFYGILNGIDPDIWDPYTDNFIPMHYTSENVVEGKNAAKRALQQRFGLQQTDVPIVGIITRLTAQKGIHLIKHALHRTLERNGQVVLLGSAPDPRIQSDFCRLADSLHGENHGRIYAGSDFILVPSIFEPCGLTQLVAMRYGSIPIVRKTGEQSLLGLKPAVGSTPSAKGSWSKTGPGTGLPWTTLNCTIQLTNFEAPIQRWQEKASIGRYYKLNETWLKVKIFYLSCRYKLTKTWFKVKIFYLSYTYICRIKTLYSMHKQLWEYVSAMFPILSFNYEYLI", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD7M36D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M12D13M7D5M9D10MD149M2D5M4D17M11D137M25D63M19D48M6D13M2D49M20D42M17D2M10D31M34D5M10D25MD23M31D13M11DMDM8D15M20D9M5D40M71D34M4D13M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DM37D4M3D9M11D6M17D10M33D8M102D4M12D5M15DM28D3M4D35MDM15D24M30D5M10D2M17D4M4D10M16DM3DM22D6M14DM218DM340DM255DM195D2M149DM74DM71D4M97DM39DM15D9M147D5M351D", "taxon_id": 4538, "taxon_name": "Oryza glaberrima", "assembly": "AGI1.1", "representative": { "id": "ORGLA08G0045500", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 905, "end": 990, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1080, "end": 1171, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1242, "end": 1331, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1341, "end": 1528, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 34, 56, 1134, 1205, 1296, 1354, 1390, 1427, 1461, 1518, 1561, 1622, 1652, 1690 ] }, { "node_id": 425950, "distance_to_parent": 0.00095, "left_index": 1567, "right_index": 1568, "protein_stable_id": "OBART08G05320.2", "gene_stable_id": "OBART08G05320", "sequence": "MEMALQPQSLLCPRSRLKVVIRPASSASGGGLAQEIYWKQNCSMHGFKFRKAKRTISLHTEVASSRGYAPRIAAESSIQEREHINNDEETFDTYNRLLRNESTEWKKLDTTEVDLSQDVSSSSMRKVDATDEAKLDILEDDLPRNLLNGVTMGEVDMLDEAGAEDDVFEVDLSALHNSTVGKMDAVNEVGTENDLFEVDLSALHSAAVGKVDVVDGAKAKEDLFEMDSLALHSVTMGKVDAINAAGAEGDKFEVDLSALALNNSMIEAVNVMDEAKAIEDTLEVELSGNATSSSTYGEVKFEVDSLGNTSSTVMYGPADGAYEPRSDEVTFKVDSSENASNNVMYGRADVVDESWADEGIFEVDFFTNASSGAEYGKVDVVDEAKTDDFTFEIDSLEKDSNNKMHGKAHMVDEAWDDEAIFEVDLFGNASSIPIYGEVNVLDEARADDGKFEVDLLGNTSSNSTHEEVDVVDEAQTGEATFEVDLLGNALSSAIYKEVPVMGGAQDDEVDVDFSINASITETEKEADAVDEARVEDETFDMDLVGKQISIDSMNDDVVEEGTKHHKYPMLSSAFIEVKTIHETPVSLKPELMSVVMDQEQDKPISSVYQQEGSIFNLHAENQSTVDFHEREQMAITFDKQKESVAKLSKEDQQTAGLPEKNMSFDGVHRKSQSIIGLPFQHQSIVSSPEKYRSIVGFHGQNQSIISSHKQDKSIVGVPKKIQSIVGSTKHDDSIVGFHKQDRSIVSVPEQKQSIVGFHKQDLSIVAVSKQNLSIVAIPRESQSKQISIVRRHDPLHLKEVETKDRDGISKKSGGDDDLPHMLFEEELSQVEDEARAIAYKKQHEVDVISLTPDIQESPQDNIDPQELRRMLQELADQNCSMGNKLFVFPEAVKANSTIDVYLNRNLSALANEPDVHIKGAFNSWRWRPFTERLHKSELSGDWWSCKLHIPKEAYRLDFVFFNGRLVYDNNDSNDFVLQVESTMDEDSFEEFLVEEKKRELERVATEEAERRRHAEEQQRMGEQRAAEQAAREQAKKEIELKKNKLQNLLSSARTHVDNLWHIEPSTYRQGDTVRLYYNRNSRPLMHSTEIWMHGGCNSWTDGLSIVERLVECDDENGDWWYANVHIPEKAFVLDWVFADGPPGNARNYDNNGRQDFHAILPNAMTNEEYWVEEENCIYTRLLHEIREREEAIKIKVEKRAKMKSEMKEKTMRMFLLSQKHIVYTEPLEIRAGTTVDVLYNPSNTVLNGKPEVWFRWSFNRWMHPSGVLPPKKMVKTEDGCHLKATVSVPSDAYMMDFVFSESEEGGIYDNRNGTDYHIPVSGSNAKEPPIHIVHIAVEMAPIAKVGGLADVVTSLSRAIQELGHHVEVILPKYNFMNQSNVKNLHVRQSFSLGGTEIKVWFGLVEDLSVYFLEPQNGMFGGGWVYGGNDAGRFGLFCQSALEFLLQSGSSPHIIHCHDWSSAPVAWLYKEHYAESRLATARIIFTIHNLEFGAHFIGKAMTYCDKATTVSHTYSKEVAGHGAIAPHRGKFYGILNGIDPDIWDPYTDNFIPMHYTSENVVEGKNAAKRALQQRFGLQQTDVPIVGIITRLTAQKGIHLIKHALHRTLERNGQVVLLGSAPDPRIQSDFCRLADSLHGENHGRIYAGSDFILVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLYDTVFDVDHDKDRARVLGLEPNGFSFDGADCNEQSLLGLKPAVGSTPSAKGSWSKTGPGTGLPWTTLNCTIQLTNFEAPIQRWQEKASIGRYYKLNETWLKVKIFYLSCRYKLTQTWFKVKIFYLSYTYICRIKTLYSMHEQLWEYVSAMFPILSFNYEYLI", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD7M36D3M9D3M52D8M30D6M128D2M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M12D13M7D5M9D10MD149M2D5M4D17M11D137M25D63M19D48M6D13M2D49M20D42M17D2M10D31M34D5M10D25MD23M31D13M11DMDM8D15M20D9M5D40M71D34M4D13M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DM37D4M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M12D5M15DM28D3M4D35MDM15D24M30D5M10D2M17D4M4D10M16DM3DM22D6M14DM218DM340DM255DM195D2M149DM74DM71D4M97DM39DM15D9M147D5M351D", "taxon_id": 65489, "taxon_name": "Oryza barthii", "assembly": "O.barthii_v1", "representative": { "id": "OBART08G05320", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 895, "end": 980, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1070, "end": 1161, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1232, "end": 1321, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1331, "end": 1518, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 34, 50, 1124, 1195, 1286, 1344, 1380, 1417, 1451, 1508, 1551, 1612, 1642, 1680, 1714 ] } ], "representative": { "id": "OBART08G05320", "score": 0.00095 } } ], "representative": { "id": "ORUFI08G05900", "score": 0 } } ], "representative": { "id": "OGLUM08G05570", "score": 0 } } ], "representative": { "id": "OGLUM08G05570", "score": 0 } }, { "node_id": 4738276, "distance_to_parent": 0.015963, "left_index": 1553, "right_index": 1562, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 79, "children": [ { "node_id": 426000, "distance_to_parent": 0, "left_index": 1560, "right_index": 1561, "protein_stable_id": "KN539976.1_FGP005", "gene_stable_id": "KN539976.1_FG005", "sequence": "MEMALRPQSLLCPRSRLKVVIRPASSASGGGLAQYFLMTRRYTGSRIVRCMVSSSDCPNRKAKRTISLHTEVASSRGYAPRIAAESSIQEREHINSDEETFDTYNRLLHNESTEWKKLDTTEVDLSQDVSSSSMRKVDATDEAKLDILEDDLPRNLLNGVTMGEVDMLDEAGAEDDVFEVDLSALHNSTVGKMDAVNEVGTENDLFEVDLSALHSAAVGKVDVVDGAKAKEDLFEMDSLALHSVTMGKVDAINAAGAEGDKFEVDLSALASNNSMIEAVNVMDEAKAIEDTLEVDLSGNATSSSTYGEVKFEVDSLGNTSSTVMYGPADGAYEPRSDEVTFKVDSSENALNNVMYGRADVVDESWADEGIFEVDFFTNASSGAEYGKVDVVDEAKTDDFTFEIDSLEKDSNNKMHGKAHMVDEAWDDEAIFEVDLFGNASSIPIYGEVNVLDEARADDGKFEVDLLGNTSSNSTHEEVDVVDEAQTGEATFEVDLLGNALSSAIYKEVPVMGGAQDDEVDVDFSINASITETEKEADAVDEARVEDETFDMDLVGKQISIDSMNDDVVEEEEGTKHHKYPMLSSAFIEVKTIHETPVSLKPELMSVVMDQEQDKPISSVYQQEGSIFNLHAENQSTVDFHEREQMAITFDKQKESVAKLSKEDQQTAGLPEQNMSFDGVHRKSQSIIGLPFQHQSIVSSPEKYQSIVGFHGQNQSIISSHKQDKSIVGVPKKIQSIVGSTKHDDSIVGFHKQDRSIVSVPEQKQSIVGFHKQDLSIVAVSEQNLSIVAKPRESQSKQISIVRRHDPLHLKEVETKDRDGISKKSSGDNDLPHMLFEEELSQVEDEARAIAYKKQHEVDVISLTPDIQESPQDNIDPQELRRMLQELADQNCSMGNKLFVFPEAVKANSTIDVYLNRNLSALANEPDVHIKGAFNSWRWRPFTERLHKSELSGDWWSCKLHIPKEAYRLDFVFFNGRLVYDNNDSNDFVLQVESTMDEDSFEEFLVEEKKRELERVATEEAERRRHAEEQQRMGEQRAAEQAAREQAKKEIELKKNKLQNLLSSARTHVDNLWHIEPSTYRQGDTVRLYYNRNSRPLMHSTEIWMHGGCNSWTDGLSIVERLVECDDENGDWWYANVHIPEKAFVLDWVFADGPPGNARNYDNNGRQDFHAILPNAMTNEEYWVEEENCIYTRLLHEIREREEAIKIKVEKRAKMKSEMKEKTMRMFLLSQKHIVYTEPLEIRAGTTVDVLYNPSNTVLNGKPEVWFRWSFNRWMHPSGVLPPKKMVKTEDGCHLKATVSVPSDAYMMDFVFSESEEGGIYDNRNGTDYHIPVSGSNAKEPPIHIVHIAVEMAPIAKVGGLADVVTSLSRAIQELGHHVEVILPKYNFMNQSNVKNLHVRQSFSLGGTEIKVWFGLVEDLSVYFLEPQNGMFGGGWVYGGNDAGRFGLFCQSALEFLLQSGSSPHIIHCHDWSSAPVAWLYKEHYAESRLATARIIFTIHNLEFGAHFIGKAMTYCDKATTVSHTYSKEVAGHGAIAPHRGKFYGILNGIDPDIWDPYTDNFIPMHYTSENVVEGKNAAKRALQQRFGLQQTDVPIVGIITRLTAQKGIHLIKHALHRTLERNGQVVLLGSAPDPRIQSDFCRLADSLHGENHGRIYAGSDFILVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLYDTVFDVDHDKDRARVLGLEPNGFSFDGADCNGVDYALNRQVPPHLTIV", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD7M36D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M12D13M7D5M9D10MD149M2D5M4D17M11D137M25D63M19D48M6D64M20D42M17D2M10D31M34D5M10D25MD23M31D13M11DMDM8D15M20D9M5D40M71D34M4D13M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DM37D4M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D3M850DM255DM195D2M149DM74DM71D4M97DM39DM15D2M510D", "taxon_id": 4528, "taxon_name": "Oryza longistaminata", "assembly": "O_longistaminata_v1.0", "representative": { "id": "KN539976.1_FG005", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 907, "end": 992, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1082, "end": 1173, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1244, "end": 1333, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1343, "end": 1530, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 34, 56, 1136, 1207, 1298, 1356, 1392, 1429, 1463, 1520, 1563, 1624, 1654, 1692 ] }, { "node_id": 4738280, "distance_to_parent": 0, "left_index": 1554, "right_index": 1559, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 95, "children": [ { "node_id": 426023, "distance_to_parent": 0, "left_index": 1557, "right_index": 1558, "protein_stable_id": "OS08T0191433-00", "gene_stable_id": "OS08G0191433", "gene_description": "Putative uncharacterized protein", "sequence": "MEMALRPQSLLCPRSRLKVVIRPASSASGGGLAQYFLMTRRYTGSRIVRCMVSSSDCPNRKAKRTISLHTEVASSRGYAPRIAAESSIQEREHINSDEETFDTYNRLLRNESTEWKKLDTTEVDLSQDVSSSSMRKVDATDEAKLDILEDDLPRNLLNGVTMGEVDMLDEAGAEDDVFEVDLSALHNSTVGKMDAVNEVGTENDLFEVDLSALHSAAVGKVDVVDGAKAKEDLFEMDSLALHSVTMGKVDAINAAGAEGDKFEVDLSALASNNSMIEAVNVMDEAKAIEDTLEVDLSGNATSSSTYGEVKFEVDSLGNTSSTVMYGPADGAYEPRSDEVTFKVDSSENASNNVMYGRADVVDESWADEGIFEVDFFTNASSGAEYGKVDVVDEAKTDDFTFEIDSLEKDSNNKMHGKAHMVDEAWDDEAIFEVDLFGNASSIPIYGEVNVLDEARADDGKFEVDLLGNTSSNSTHEEVDVVDEAQTGEATFEVDLLGNALSSAIYKEVPVMGGAQDDEVDVDFSINASITETEKEADAVDEARVEDETFDMDLVGKQISIDSMNDDVVEEGTKHHRYPMLSSAFIEVKTIHETPVSLKPELMSVVMDQEQDKPISSVYQQEGSIFNLHAENQSTVDFHEREQMAITFDKQKESVAKLSKEDQQTAGLPEQNMSFDGVHRKSQSIIGLPFQHQSIVSSPEKYRSIVGFHGQNQSIISSHKQDKSIVGVPKKIQSIVGSTKHDDSIVGFRKQDRSIVSVPEQKQSIVGFHKQDLSIVAVSEQNLSIVAIPRESQSKQISIVRRHDPLHLKEVETKDRDGISKKSGGDDDLPHMLFEEELSQVEDVARAIAYKKQHEVDVISLTPDIQESPQDNIDPQELRRMLQELADQNCSMGNKLFVFPEAVKANSTIDVYLNRNLSALANEPDVHIKGAFNSWRWRPFTERLHKSELSGDWWSCKLHIPKEAYRLDFVFFNGRLVYDNNDSNDFVLQVESTMDEDSFEEFLVEEKKRELERVATEEAERRRHAEEQQRMGEQRAAEQAAREQAKKEIELKKNKLQNLLSSARTHVDNLWHIEPSTYRQGDTVRLYYNRNSRPLMHSTEIWMHGGCNSWTDGLSIVERLVECDDENGDWWYANVHIPEKAFVLDWVFADGPPGNARNYDNNGRQDFHAILPNAMTNEEYWVEEENCIYTRLLHEIREREEAIKIKVEKRAKMKSEMKEKTMRMFLLSQKHIVYTEPLEIRAGTTVDVLYNPSNTVLNGKPEVWFRWSFNRWMHPSGVLPPKKMVKTEDGCHLKATVSVPSDAYMMDFVFSESEEGGIYDNRNGTDYHIPVSGSNAKEPPIHIVHIAVEMAPIAKVGGLADVVTSLSRAIQELGHHVEVKNLHVRQSFSLGGTEIKVWFGLVEDLSVYFLEPQNGMFGGGWVYGGNDAGRFGLFCQSALEFLLQSGSSPHIIHCHDWSSAPVAWLYKEHYAESRLATARIIFTIHNLEFGAHFIGKAMTYCDKATTVSHTYSKEVAGHGAIAPHRGKFYGILNGIDPDIWDPYTDNFIPMHYTSENVVEGKNAAKRALQQRFGLQQTDVPIVGIITRLTAQKGIHLIKHALHRTLERNGQVVLLGSAPDPRIQSDFCRLADSLHGENHGRIYAGSDFILVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLYDTVFDVDHDKDRARVLGLEPNGFSFDGADCNGVDYALNRQVPPHLTIVAISSWFEARGWFHSLCKRVMEQDWSWNRPALDYIELYHSAHKF", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD7M36D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M12D13M7D5M9D10MD149M2D5M4D17M11D137M25D63M19D48M6D13M2D49M20D42M17D2M10D31M34D5M10D25MD23M31D13M11DMDM8D15M20D9M5D40M71D34M4D13M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D2M58D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DM37D4M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D4M2D9M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM310DM504D", "taxon_id": 39947, "taxon_name": "Oryza sativa Japonica Group", "assembly": "IRGSP-1.0", "representative": { "id": "OS08G0191433", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 905, "end": 990, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1080, "end": 1171, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1242, "end": 1331, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1341, "end": 1515, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 34, 56, 1134, 1205, 1296, 1354, 1377, 1414, 1448, 1505, 1548, 1609, 1639, 1677, 1727 ] }, { "node_id": 425703, "distance_to_parent": 0, "left_index": 1555, "right_index": 1556, "protein_stable_id": "BGIOSGA028122-PA", "gene_stable_id": "BGIOSGA028122", "gene_description": "Putative uncharacterized protein", "sequence": "MALRPQSLLCPRSRLKVVIRPASSASGGGLAQYFLMTRRYTGSRIVRCMVSSSDCPNRKSKRTISLHTEVASSRGYAPRIAAESSIQEREHINSDEETFDTYNRLLRNESTEWNKLDTTEVDLSQDVSSSSMRKVDATDEAKLDILEDDLPRNLLNGVTMGEVDMLDEAGAEDDVFEVDLSTLHNSTVGKMDAVNEVGTENDLFEVDLSALHSAAVGKVDVVDEAKAKEDLFEMDSLALHSVTMGKVDAINAAGAEGDKFEVDLSALASNNSMIEAVNVMDEAKAIEDTLEVDLSGNATSSSTYGEVKFEVDSLGNTSSTVMYGPADGAYEPRSDEVTFKVDSSENASNNVMYGRADVVDESWADEGIFEVDFFTNASSGAEYGKVDVVDEAKTDDFTSEIDSLEKDSNNKMHGKAHMVDEAWDGEAIFEVDLFGNASSIPIYGEVNVLDEARADDGKFEVDLLGNTSSNSTHEEVDVVDEAQTGEATFEVDLLGNALSSAIYKEVPVMGGAQDDEVDVDFSINASITETEKEADAVDEARVEDETFDMDLVGKQISIDSMNDDVVEEGTKHHRYPMLSSAFIEVKTIHETPVSLKPELMSVVMDQEQDKPISSVYQQEGSIFNLHAENQSTVDFHEREQMAITFDKQKESVAKLSKEDQQTAGLPEQNMSFDGVHRKSQSIIGLPFQHQSIVSSPEKYRSIVGFHGQNQSIISSHKQDKSIVGVPKKIQSIVGSTKHDDSIVGFRKQDRSIVSVPEQKQSIVGFHKQDLSIVAVSEQNLSIVAIPRESQSKQISIVRRHDPLHLKEVETKDRDGISKKSGGDDDLPHMLFEEELSQVEDEARAIAYKKQHEVDVISLTPDIQESPQDNIDPQELRRMLQELADQNCSMGNKLFVFPEAVKANSTIDVYLNRNLSALANEPDVHIKGAFNSWRWRPFTERLHKSELSGDWWSCKLHIPKEAYRLDFVFFNGRLVYDNNDSNDFVLQVESTMDEDSFEEFLVEEKKRELERVATEEAERRRHAEEQQRMGEQRAAEQAAREQAKKEIELKKNKLQNLLSSARTHVDNLWHIEPSTYRQGDTVRLYYNRNSRPLMHSTEIWMHGGCNSWTDGLSIVERLVECDDENGDWWYANVHIPEKAFVLDWVFADGPPGNARNYDNNGRQDFHAILPNAMTNEEYWVEEENCIYTRLLHEIREREEAIKIKVEKRAKMKSEMKEKTMRMFLLSQKHIVYTEPLEIHAGTTVDVLYNPSNTVLNGKPEVWFRWSFNRWMHPSGVLPPKKMVKTEDGCHLKATVSVPSDAYMMDFVFSESEEGGIYDNRNGTDYHIPVSGSNAKEPPIHIVHIAVEMAPIAKVGGLADVVTSLSRAIQELGHHVEVILPKYNFMNQSNVKNLHVRQSFSLGGTEIKVWFGLVEDLSVYFLEPQNGMFGGGWVYGGNDAGRFGLFCQSALEFLLQSGSSPHIIHCHDWSSAPVAWLYKEHYAESRLATARIIFTIHNLEFGAHFIGKAMTYCDKATTVSHTYSKEVAGHGAIAPHRGKFYGILNGIDPDIWDPYTDNFIPMHYTSENVVEGKNAAKRALQQRFGLQQTDVPIVGIITRLTAQKGIHLIKHALHRTLERNGQVVLLGSAPDPRIQSDFCRLADSLHGENHGRIYAGSDFILVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLYDTVFDVDHDKDRARVLGLEPNGFSFDGADCNGVDYALNRQVPPHLTIVAISSWFEARGWFHSLCKRVMEQDWSWNRPALDYIELYHSAHKF", "cigar": "432D2M94DMDM79D4M19D2M57D3M447D4M12D3MD7M36D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M12D13M7D5M9D10MD149M2D5M4D17M11D137M25D63M19D48M6D13M2D49M20D42M17D2M10D31M34D5M10D25MD23M31D13M11DMDM8D15M20D9M5D40M71D34M4D13M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DM37D4M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D4M2D9M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM310DM504D", "taxon_id": 39946, "taxon_name": "Oryza sativa Indica Group", "assembly": "ASM465v1", "representative": { "id": "BGIOSGA028122", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 903, "end": 988, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1078, "end": 1169, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1240, "end": 1329, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1339, "end": 1526, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 32, 54, 1132, 1203, 1294, 1352, 1388, 1425, 1459, 1516, 1559, 1620, 1650, 1688, 1738 ] } ], "representative": { "id": "OS08G0191433", "score": 0 } } ], "representative": { "id": "KN539976.1_FG005", "score": 0 } } ], "representative": { "id": "KN539976.1_FG005", "score": 0.015963 } } ], "representative": { "id": "OPUNC08G05170", "score": 0.007886 } } ], "representative": { "id": "OPUNC08G05170", "score": 0.030119 } } ], "representative": { "id": "OPUNC08G05170", "score": 0.039759 } }, { "node_id": 4738325, "distance_to_parent": 0.033002, "left_index": 1527, "right_index": 1548, "taxon_id": 147368, "taxon_name": "Pooideae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425721, "distance_to_parent": 0.05546, "left_index": 1546, "right_index": 1547, "protein_stable_id": "BRADI3G15027.1", "gene_stable_id": "BRADI3G15027", "sequence": "MAMALRPQSPLCPRSRQQPLVVRPAGGAGLPQLFLYMMRALLILYESVFGCQQTFISDQQIYSKQDCSMHGNKFSLCLSKLGHADSPNRKSRRTISPHVEVISSRGYTPRLTVELSTKKREDEETVGTYNRLFSTDATEWTGSREAGTAEADTPQNASTGSIMGEGDVVDQDIFEVDTPSSVTAGRVDAAGKAGVEQDIFEVDLSATALSSAIIGGLDMMDEDGAVQEQESFEAVLSGNVSSSPTIGEVDVVDEAGPAQDTFEVTVSGNVSTSAMMGEMDAVDEAGSDHDSAETYLSGKGSSSVLMMGLNAVDEVGADYDIFNIDLSGNVSRSATMGEVEAVDEAGTDHGTFGTYLSIAATGEVGVVDEAGVDRDIFETDLSGNVSRSAATGQVNAVDEAGADQDKFKVNLSGNIAISVAHEEVDVMDDARAEGTLEMDLSGSVSGNDEEEAYEQLYPALSTIPMGGNAMDKTPVCLKPELTLVRVHEQGESNLSVHEQEESTVTFYEQNQLAIPFREQELTIIAFDKQNLPTAKFPKQDQSIAALSEQKKSIVASYRQDRSILDLPEQHQSIIGSHKHDKSIADASEQIHSIVGSFKQRQSIVAFRKQDQAIVSVPKQKQSIVAFRKQDLSIVGLQKQNVSIIDTSGEEQTKQVAVIDRHDALHMKGVEAKDEYYTYQKDGGHALHVNFDVDNLLQKHQTERTEEAVGMTTSKKVNEEHISMTEDQIGAAKEQMIVTEDGLSMNEVGTGVGDKVEHLLSEEELSQAEDEVGLIEDDGQYEVDETSVSVEPDIQELPQDVVDPHELQRMLQELAGKNYSMGNKLFVFPEVVKADSVIDLYLNRDLTALASEPDVVIKGAFNGWKWRLFTERLNKSDLGGVWWSCKLYIPKEAYRLDFVFFNGRSVYENNGNNDFFIEIESTMDEDIFEDFLVKEKQRELERLAIEEAERRTQTEEQRRRKEEKAADEAIWAQVKAEVETKKNKLHNMLSLARTCVDNLWYTDTSTDTRGDTVRLYYNRNSRPLMYSTEIWMHGGYNNWTDGLSIVERLVKCNDKNGDWWHADVILPEKALVLDWVLADGPPGNARTYDNNGRQDFHAILPNVWTEEGYWVQEEHNIYTRLLQERREREEAIKRKTERSAKMKAEMKAKTMRRFLLSQKHIVYTEPLEICAGTTVEIIYNPSNTVLNGKPEVWFRGSFNLWMHPSGALPPQKMVKVQDGSLLKATVSVPPDAYMLDFVFSESEDGGIYDNRNGMDYHIPVSDSIGTEDHMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHTVEVILPKYDCLKQSSVKNLHLYTSFSWGGTEIKVWTGLVEDLLVYFLEPQNGMFEVGCVYGRNDDRRFGFFCHSALEFLLQNGSSPHIIHCHDWSSAPVAWIYKEHYAQSRLASARVVFTIHNLEFGAQYISKAMAYCDKATTVSHTYSREVTGHGAIAPHREKFYGILNGIDQDIWDPYTDDFLPVSYTSENVVEGKSAAKRALQQKFGLQQTDVPIVGIITRLTPQKGIHLIKHAIHRTLESNGQVVLLGSAPDPRIQGDFCRLADSLHGVYHGRVKLALTYDEPLSRLIYAGSDFILVPSIFEPCGLTQLVAMRYGSVPIVRKTGGLYDTVFDVDNDRERARSLGLEPNGFSFNGADSNGVDYALNRAIAAWFDARDWFHSLCKRVMEQDWSWNRPALDYIELYHSARKF", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M446D5M12D3MD4M39D3M9D2M54D14M15D28M10D5M8D4MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D6M32D12M2D5M7D11M7D5M9D17M3D6M4D30M26D9M58D7M2D4M37D6M25D190M19DM28D8MD15M13DM2D32MD16M20D42M17D2M10D31M54D20MD14M41D12M11DMDM8D15M20D9M5D88M2D20MD37M2D12M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM310DM504D", "taxon_id": 15368, "taxon_name": "Brachypodium distachyon", "assembly": "v1.0", "representative": { "id": "BRADI3G15027", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 834, "end": 919, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1009, "end": 1100, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1171, "end": 1260, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1270, "end": 1457, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1516, "end": 1638, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 32, 54, 75, 1063, 1134, 1225, 1283, 1319, 1356, 1390, 1447, 1490, 1551, 1595, 1633, 1674 ] }, { "node_id": 4738328, "distance_to_parent": 0.048523, "left_index": 1528, "right_index": 1545, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 98, "children": [ { "node_id": 425696, "distance_to_parent": 0.01306, "left_index": 1543, "right_index": 1544, "protein_stable_id": "MLOC_57001.1", "gene_stable_id": "MLOC_57001", "gene_description": "Uncharacterized protein", "sequence": "MEMALRPRSPLCPRGRQPLVVVVCPAGLAQPFWMNGRFTRSRTVRCMVASSDSPNRKSRRLVSPQVKVISSRGYTTRLIVEPSTENTEHNNGDEEILDTYNALLHTEAAEWTDTREAETAEADSSQNASSSSIIRELDAADEDILAVDLTVNALSSVTKREVDAADKARVEEDVFELDLPATTLRSVIVDVIDDNGTVQETLRSVIVDVTDDVADKARVEEDIFELDFSGNVSSSATTVELDAVDEVGPVQDTFEASLSGNVSNSATVQEVDAVDEAGNDQDIFKADLSGNIFSSSTTVEVGVVDEAGSTKDRFEMDSSGNVSTSATMWDAIDEAVADQDAVEADLSGNASSWATYRELDDMVDENRSEEETFVMDLVGEATDEEENYQQQYPVPSSFSMWDKAIAKTGVSLNPEPRLTSVQEQGKVNFSDKQDLSIADLPGQNQSIVGSCKQDKSIADVAGPPQSIFGSSKQHRPIVAFRKQNHSIVSDPKQKQSIVGFRSQDLSAVDLPKQNIPIVGTSSEGQTKQVPVVDRQDALYVNGLELKEGDHRSEKTDEDALHVKFNIDNVLQKHLADRTQAVETTIWKEVDEEHLYMTEHQIGSTEGHMVLNEDELSITEIGMGSGDKIQHALSEEELSWSEDEVQLNKDDGQYEVDETSASFTVEQDIQGPPQDVVDPQALRAMLQELADKNYSMRNKLFVFPEVVKADSVIDLYLNRDLTALANEPDVVIKGAFNGWKWKLFSERLHKSDLGGVWWSCKLHIPKEAYRLDFVFFNGRTVYENNGNNDFCIGIEGTMNEDLFEDFLVKEKQRELEKLAMEEAERRTQTDEQRRRKEARAADEAVRAQAKAEIEIKKNKLHSMLSLARTCDDNLWYIEASTDTRGDTIRLYYNRNSRPLAHSTEIWMHGGYNNWTDGLSIVESFVKCNDEDGDWWYADVILPEKALVLDWVFADGPAGNARNYDNNSRKDFHAIIPNKNVTKKGFWVQEEQNIYTRLLQERREKEEIMRRKAERSANMKAEMKAKTMRRFLLSQKHIVYTEPLEVRAGTAVDVLYNPSNTVLNGKTEVWFRCSFNLWMHPSGALPPQKMVKSGDGSLLKATVNVPPDAYMMDFVFSESDENGIYDNRNGMDYHIPVSDSIETENYMRIIHIAVEMAPVAKVGGLGDVVTSLSRAVQDLGHTVEVILPKYDCLNQSSVKDLHLYQSFSWSGTEIKVWVGQVENLTVYFLEPQNGMFGVGCVYGRNDDRRFGFFCHSALEFILQNGLSPHIIHCHDWSSAPVAWLYKEHYSQSRMASTRVVFTIHNLEFGAHYIGKAMTYCDKATTVSPTYSREVAGHGAIAPHREKFYGILNGIDPDIWDPYTDNFIPVPYTYENVVEGKSAAKRALQQKFGLQQTDVPVVGIITRLTAQKGIHLIKHAIHQTLESNGQVVLLGSAPDHRIQGDFCRLADALHGVYHGRVKLVLTYDEPLSHLIYAGSDFILVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLHDTVFDVDNDKERARSLGLEPNGFSFDGADSNGVDYALNRAIAAWFDARDWFHSLCKRVMEQDWSWNRPALDYIELYHAARKF", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M446D5M12D6M42D2M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M2D5M7D11M7D5M9D17M3D40M26D7M61D6M2D5MD15M16D10M25D56M30D16M25D30M2D31M19DM27D18M15D6M2D32MD15M51D5M57D10M54D20MD14M41D12M11DMDM8D15M20D9M5D61MD26M2D20MD51M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D55M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM310DM504D", "taxon_id": 112509, "taxon_name": "Hordeum vulgare subsp. vulgare", "assembly": "ASM32608v1", "representative": { "id": "MLOC_57001", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 709, "end": 794, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 884, "end": 975, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1047, "end": 1136, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1146, "end": 1333, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1392, "end": 1516, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 30, 52, 938, 1010, 1101, 1159, 1195, 1232, 1266, 1323, 1366, 1427, 1471, 1509, 1550 ] }, { "node_id": 4738333, "distance_to_parent": 0.015203, "left_index": 1529, "right_index": 1542, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 28, "children": [ { "node_id": 425939, "distance_to_parent": 0.007801, "left_index": 1540, "right_index": 1541, "protein_stable_id": "TRIAE_CS42_1BS_TGACv1_050983_AA0177050.1", "gene_stable_id": "TRIAE_CS42_1BS_TGACv1_050983_AA0177050", "sequence": "MEMSLWPRSPLCPRSRQPLVVVRPAGRGGLTQPFLMNGRFTRSRTLRCMVASSDPPNRKSRRMVPPQVKVISSRGYTTRLIVEPSNENTEHNNRDEETLDTYNALLSTETAEWTDNREAETAKADSSQNALSSSIIGEVDVADEDILAADLTVYSLSSVMKTEVDAADKARVKEDVFELDLPATTLRSVIVDVMDHNGTVQETLRSVIVDVMDDAADKARVEEDVFELDLSGNISSSATTVELDAVDEVGPVQDTFEATSSGNVSNSTTVREVDAIDEAGNDQDIFRADLSGNVFSSITTVEVGAVDEAGSIKDRFETDSSGNVSTSATMWDAIDETVADQETFEADLSGNASSCATYREVDDVVDETRSEEETFAMDLFASDSGHEKHMAVDYVGEATDEEEIYQQQYPVLSSFSMWDKAIAKTGVSLNPEMRLVRVQEQDKVNFSDKKDLSIDDLPGQNQSIIGSYKQDKSVADVAEPTQSIFGSSKQHRSIVAFPKQNQSIVGVPKQKQSIVGFRSQDLSTVSLPKQNIPIVGTSREGQTKHVPVVDRQDALYVNGLEAKEGDHTSEKTDEDALHVNFNVDNVLRKHQANRTQAMETTTWKKVDEEHLHITEHQIGGAEGQMVVNEDELSITEIGMGRGDKIQHVLSEEELSCSEDEVQLIVDDRQYEVDETSVSINVEQDIQGSPQDVVDPQALRVMLQELAEKNYSMRNKLFVFPEVVKADSVIDLYLNRDLTALANEPDVVIKGAFNGWKWRLFTERLHKSDLGGVWWSCKLYIPKEAYRLDFVFFNGRTVYENNGNNDFCIGIEGTMNEDLFEDFLVKEKQRELEKLAMEEAERRTQTEEQRRRKEARAADEAVRAQAKAEIEIKKKKLQSMLSLARTCVDNLWYIEASTDTRGDTIRLYYNRNSRPLAHSTEIWMHGGYNNWTDGLSIVESFVKCNDKDGDWWYADVIPPEKALVLDWVFADGPAGNARNYDNNARQDFHAILPNNNVTEEGFWAQEEQNIYTRLLQERREKEETMKRKAERSANIKAEMKAKTMRRFLLSQKHIVYTEPLEIRAGTTVDVLYNPSNTVLNGKSEVWFRCSFNLWMHPSGALPPQKMVKSGDGPLLKATXXXPPDAYMMDFVFSEWEEDGIYDNRNGMDYHIPVSDSIETENYMRIIHIAVEMAPVAKVGGLGDVVTSLSRAIQDLGHTVEVILPKYDCLNQSSVKDLHLYQSFSWGGTEIKVWVGRVEDLTVYFLEPQNGMFGVGCVYGRNDDRRFGFFCHSALEFILQNEFSPHIIHCXWSSAPVAWLYKEHYSQSRMASTRVVFTIHNLEFGAHYIGKAMTYCDKATTVSPTYSRDVAGHGAIAPHREKFYGILNGIDPDIWDPYTDNFIPVPYTCENVVEGKRAAKRALQQKFGLQQTDVPIVGIITRLTAQKGIHLIKHAIHRTLESNGQVVLLGSAPDHRIQGDFCRLADALHGVYHGRVKLVLTYDEPLSHLIYAGSDFIIVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLHDTVFDVDNDKDRARSLGLEPNGFSFDGADSNGVDYALNRAIGAWFDARDWFHSLCKRVMEQDWSWNRPALDYIELYHAARKF", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M446D5M12D3MD4M39D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M2D5M7D11M7D5M9D17M3D40M26D7M61D6M2D5MD15M16D10M25D56M30D16M25D30M2D31M19DM27D39M2D32MD15M51D5M57D10M54D20MD14M41D12M11DMDM8D15M20D9M5D61MD26M2D20MD51M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D55M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2DMD12M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM310DM504D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_1BS_TGACv1_050983_AA0177050", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 726, "end": 811, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 901, "end": 992, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1064, "end": 1153, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1163, "end": 1349, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1408, "end": 1531, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 32, 54, 206, 955, 1027, 1118, 1176, 1212, 1249, 1283, 1339, 1382, 1443, 1487, 1525, 1566 ] }, { "node_id": 4738342, "distance_to_parent": 0.00433, "left_index": 1530, "right_index": 1539, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 22, "children": [ { "node_id": 425683, "distance_to_parent": 0.022385, "left_index": 1537, "right_index": 1538, "protein_stable_id": "EMT23989", "gene_stable_id": "F775_25848", "gene_description": "Soluble starch synthase 3, chloroplastic/amyloplastic", "sequence": "MVSPQVKVISSRGYTTRLIVEPSTENIEHNNRDEETLDTYNALLSTETAEWTDTREAETAKADSSQNALSSSIIGGVDVADEDILAADLTVNSLSSITKKEVDAVDKARVKEDVFELDLPATTLRSVIVDVMDHNGTVQETLRSVIVDVMDDAADKARVEEDVFELDLSGNISSSATTVELDAVDEVGPVQDTFEANSSGNVSNSATVREVDTSAEAGNDQGIFRADLSGNVFSSSTTVEVGAVDEAGSIKDRFETDSSGNVSTSATMWDAIDETVADQDAVEADLSGNASSCATYREVDDVVDETRSEEETFAMDLFASESGHEKHMAVDHVGEATDEEETYQQQYPVPSSFSMWDKAIAKTGVSLNPELRLVRVEEQGKVNFSDKKDLSIDDLPGQNQSIIGSYKQDKSIADVAGPTQSIFGSSKQHRSIVAFPKQNQSIVSVTEQKQSIVGFRSQDLSAVSLPKQNVPIVGTSREGQTKQVPVVDRQDALYVNGLEAKEGDHTSEKTDEDVLHVKFNVDNVLRKHQADRTQAVETITWKKVDEEHLYMTEHQIGAAEGQMVVNEDELSITEIGMGRGDKIQHVLSEEELSWSEDEVQLIEDDGQYEVDETSVSVNVEQDIQGSPQDVVDPQALKVMLQELAEKNYSMRNKLFVFPEVVKADSVIDLYFNRDLTALANEPDVVIKGAFNGWKWRLFTERLHKSDLGGVWWSCKLYIPKEAYRLDFVFFNGRTVYENNGNNDFCIGIEGTMNEDLFEDFLVKEKQRELEKLAMEEAERRTQTEEQRRSKEARAADEAVRAQAKAEIEIKNKKLQSMLSLARTCVDNLWYIEASTDTSGDTIRLYYNRNSRPLAHSTEIWMHGGYNNWSDGLSIVESFVKCNDRDGDWWYADVIPPEKALVLDWVFADGPAGNARNYDNNARQDFHAILPNNNVTEEGFWVQEEQNIYTRLLQERREKEETMKRKAERSANIKAEMKAKTMRRFLLSQKHIVYTEPLEIRAGTTVDVLYNPSNTVLNGKPEVWFRCSFNLWMHPSGALPPQKMVKSGDGPLLKATVNVPPDAYMMDFVFSEWEEDGIYDNRNGMDYHIPVSDSIETENYMRIIHIAVEMAPVAKVGGLGDVVTSLSRAVQDLGHTVEVILPKYDCLNQSSVKDLHLYQSFSWGGTEIKVWVGRVEDLTVYFLEPQNGMFGVGCVYGRNDDRRFGFFCHSALEFILQNEFSPVSPTYSRDVAGHGAIAPHREKFYGILNGIDPDIWDPYTDNFIPVPYTCENVVEGKRAAKRALQQKFGLQQTDVPIVGIITRLTAQKGIHLIKHAIHRTLESNGQVVLLGSAPDHRIQGDFCRLADALHGVYHGRVKLVLTYDEPLSHLIYAGSDFIIVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLYDTVFDVDNDKDRARSLGLEPNGFSFDGADSNGVDYALNRQGHDYADSLVLKQTRSSKL", "cigar": "1607DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M2D5M7D11M7D5M9D17M3D40M26D7M61D6M2D5MD15M16D10M25D56M30D16M25D30M2D31M19DM27D39M2D32MD15M51D5M57D10M54D20MD14M41D12M11DMDM8D15M20D9M5D61MD26M2D20MD51M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D55M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM230D11M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M82D2M3DM15D2M21DM30D3M13DM17D4M4DM8DM16DM3DM4DM2016D", "taxon_id": 37682, "taxon_name": "Aegilops tauschii", "assembly": "ASM34733v1", "representative": { "id": "F775_25848", "score": -100 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 664, "end": 749, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 839, "end": 930, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1002, "end": 1091, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1101, "end": 1217, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1290, "end": 1413, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 893, 965, 1056, 1114, 1150, 1187, 1221, 1264, 1325, 1369, 1407, 1449 ] }, { "node_id": 4738345, "distance_to_parent": 0.00752, "left_index": 1531, "right_index": 1536, "taxon_id": 4564, "taxon_name": "Triticum", "node_type": "speciation", "bootstrap": 45, "children": [ { "node_id": 425979, "distance_to_parent": 0.038495, "left_index": 1534, "right_index": 1535, "protein_stable_id": "TRIUR3_16002-P1", "gene_stable_id": "TRIUR3_16002", "gene_description": "Soluble starch synthase 3, chloroplastic/amyloplastic", "sequence": "MVSPQVKVISSRGYTTRLIVEPSTENIEHNNRDEETLDTYNALLSTETAEWTDTREAETAKADSSQNALSSSIIGGVDVADEDILAADLTVNSLSSITKKEVDAADKARVKEDVFELDLPATTLRSVIVDVMDHNRTVQETLRSVIVDVMDHNGTVQETLRSVIVDVMDDVADKARVEEDVFELDFSGNISSSATTVELDAVDEVGPVQDRFEATSSGNVSNSATVREVDTSDEAGNDQGIFRADLSGNVFSSSTTVEVGAVDEAGSIKDRFETDSSGNVSTSAPMWDAIDETVADQDTFEVDLLGNASSCATYREVDDVVDETRSEEETFVMDLFASESGHEKHMAVDYVGEATDEEETYQQQYPVPSSFSMWDKAIAKTGVSLNPELRLVRVEEQGKVNFSDKKDLSIDDLPRQNQSIIGSYKQDKSIADVAGPTQSIFGSSKQHRSIVAFPKQNQSTVSVPEQKQSIVGFHSQDLSAVSPPKQNVPIVGTSREGQTKQVPVVDRQDALYVNGLEAKEGDHTSKKTDEDALHVKFNVDNVLRKHQADRTQAVERTTWKKVDEEHLYMTEHQKSAAEGQMVVNEDELSITEIGMGRGDKIQHVLSEEELSWSEDEVQLIEDDGQYEVDETSVSVNVEQDIQGSPQDVVDPQALRVMLQELAEKNYSMRNKLFAFPEVVKADSVIDLYLNRDLTALANEPDVVIKGAFNGWKWRLFTERLHKSDLGGVWWSCKLYIPKEAYRLDFVFFNGRTVYENNGNNDFCIGIEGTMNEDLFEDFLVKEKQRELEKLAMEEAERRTQTEEQRRSKEARAADEAVRAQAKAEIEIKKKKLQSMLSLARTCVDNLWYIEASTDTSRDTIRLYYNRNSRPLAHSTEIWMHGGYNNWSDGLSIVESFVKCNDRDGDWWYADVIPPEKALVLDWVFADGPAGNARNYDNNARQDFHAILPNNNVTEEGFWVQEEQNIYTRLLQERREKEETMKRKAERSANIKAEMKAKTMRRCSFNLWMHPSGALPPQKMVKSGDGPLLKATVNVPPDAYMMDFVFSEWEEDGIYDNRNGMDYHIPVSDSIETENYMRIIHIAVEMAPVAKVGGLGDVVTSLSRAVQDLGHTVEVILPKYDCLNQSSVKDLHLYQSFSWGGTEIKVWVGRVEDLTVYFLEPQNGMFGVGCVYGRNDDRRFGFFCHSALEFILQNEFSPHIIHCHDWSSAPVAWLYKEHYSQSRMASTRVVFTIHNLEFGAHYIGKAMTYCDKATTVSPTYSRDVAGHGAIAPHREKFYGILNGIDPDIWDPYTDNFIPVPYTCENVVEGKSAAKRALQQKFGLQQTDVPIVGIITRLTAQKGIHLIKHAIHRTLESNGQVVLLGSAPDHRIQGDFCRLADALHGVYHGRVKLVLTYDEPLSHLIYAGSDFIIVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLYDTVFDVDNDKDRARSLGLEPNGFSFDGADSNGVDYALNRQCTPYACVGIGDALACPVKPFPFTYLGLPLSIYKTPSSSLLPLVERMLKKLATWKASLLSYSERLALVRHVLSAMPMYLLLTMAINPHILKKVIRVMRDFLWHDRKDTKADHALFPVHESATHLS", "cigar": "1607DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M2D5M7D11M7D5M9D17M3D45MD12M7D8M61D6M2D5MD15M16D10M25D56M30D16M25D30M2D31M19DM27D39M2D32MD15M51D5M57D10M54D20MD14M41D12M11DMDM8D15M20D9M5D61MD26M2D20MD51M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D55M3D11M6D8M15D6M18D15M115D25MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15D31M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3D11MD4M218D8M5D2M326DM255DM195D2M149DM310D11M7D14M19D3M27D2M68D3M351D", "taxon_id": 4572, "taxon_name": "Triticum urartu", "assembly": "ASM34745v1", "representative": { "id": "TRIUR3_16002", "score": -100 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 682, "end": 767, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 857, "end": 948, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 993, "end": 1067, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1077, "end": 1264, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1323, "end": 1445, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 911, 983, 1001, 1032, 1090, 1126, 1163, 1197, 1254, 1297, 1358, 1402, 1440, 1482 ] }, { "node_id": 425828, "distance_to_parent": 0.00074, "left_index": 1532, "right_index": 1533, "protein_stable_id": "TRIAE_CS42_1AS_TGACv1_020151_AA0075220.1", "gene_stable_id": "TRIAE_CS42_1AS_TGACv1_020151_AA0075220", "sequence": "MEMALRPRGSLCPRSTQPLVVVRPAGRGGGLAQPFLMNGRFTRSRTLRCMVASSDPPNRKSRKMVSPQVKVISSRGYTTRLIVEPSTENIEHNNRDEETLDTYNALSSTETAEWTDTREAETAKADSSQNALSSSIIGGVDVADEDILAADLTVNSLSSITKKEVDAADKARVKEDAFELDLPATTLRSVIVDVMDHNGTVQETLRSVIVDVMDHNGTVQETLRSVIVDVMDDAADKARVEEDVFELDLSGNISSSATTVELDAVDEVGPVQDRFEATSSGNVSNSATVREVDTSDEAGNDQGIFRADLSGNVFSSSTTVEVGAVDEAGSIKDRFETDSSGNVSTSAPMWDAIDETVADQDTFEADLLGNASSCATYREVDDVVDETRSEEETFVMDLFASESGHEKHMAVDYVGEATDEEETYQQQYPVPSSFSMWNKAIAKTGVSLNPELRLVRVEEQGKVNFSDKKDLSIDDLPRQNQSIIGSYKQDKSIADVAGPTQSIFGSSKQHRSIVAFPKQNQSTVSVPEQKQSIVGFHSQDLSAVSLPKQNVPIVGTSREGQTKQVPVVDRQDALYVNGLEAKEGDHTSEKTDEDALHVKFNVDNVLRKHQADRTQAVERTTWKKVDEEHLYMTEHQKSAAEGQMVVNEDELSITEIGMGRGDKIQHVLSEEELSWSEDEVQLIEDDGQYEVDETSVSVNVEQDIQGSPQDVVDPQALRVMLQELAEKNYSMRNKLFVFPEVVKADSVIDLYLNRDLTALANEPDVVIKGAFNGWKWRLFTERLHKSDLGGVWWSCKLYIPKEAYRLDFVFFNGRTVYENNGNNDFCIGIEGTMNEDLFEDFLVKEKQRELEKLAMEEAERRTQTEEQRRSKESRAADEAVRAQAKAEIEIKKKKLQSMLSLARTCVDNLWYIEASTDTSRDTIRLYYNRNSRPLAHSTEIWMHGGYNNWSDGLSIVESFVKCNDRDGDWWYADVIPPEKALVLDWVFADGPARNARNYDNNARQDFHAILPNNNVTEEGFWVQEEQNIYTRLLQERREKEETMKRKAERSANIKAEMKAKTMRRFLLSQKHIVYTEPLEIRAGTTVDVLYNPSNTVLNGKPEVWFRCSFNLWMHPSGALPPQKMVKSGDGPLLKATVNVPPDAYMMDFVFSEWEEDGIYDNRNGMDYHIPVSDSIETENYMRIIHIAVEMAPVAKVGGLGDVVTSLSRAVQDLGHTVEVILPKYDCLNQSSVKDLHLYQSFSWGGTEIKVWVGRVEDLTVYFLEPQNGMFGVGCVYGRNDDRRFGFFCHSALEFILQNEFSPHIIHCHDWSSAPVAWLYKEHYSQSRMASTRVVFTIHNLEFGAHYIGKAMTYCDKATTVSPTYSRDVAGHGAIAPHREKFYGILNGIDPDIWDPYTDNFIPVPYTCENVVEGKSAAKRALQQKFGLQQTDVPIVGIITRLTAQKGIHLIKHAIHRTLESNGQVVLLGSAPDHRIQGDFCRLADALHGVYHGRVKLVLTYDEPLSHLIYAGSDFIIVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLYDTVFDVDNDKDRARSLGLEPNGFSFDGADSNGVDYALNRAIGAWFDARDWFHSLCKRVMEQDWSWNRPALDYIELYHAARKF", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M446D5M12D3MD5M38D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M2D5M7D11M7D5M9D17M3D45MD12M7D8M61D6M2D5MD15M16D10M25D56M30D16M25D30M2D31M19DM27D39M2D32MD15M51D5M57D10M54D20MD14M41D12M11DMDM8D15M20D9M5D61MD26M2D20MD51M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D55M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM310DM504D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_1AS_TGACv1_020151_AA0075220", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 745, "end": 830, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 920, "end": 1011, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 1083, "end": 1172, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 1182, "end": 1369, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1428, "end": 1551, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 33, 55, 974, 1046, 1137, 1195, 1231, 1268, 1302, 1359, 1402, 1463, 1507, 1545, 1586 ] } ], "representative": { "id": "TRIUR3_16002", "score": -99.961505 } } ], "representative": { "id": "F775_25848", "score": -99.977615 } } ], "representative": { "id": "F775_25848", "score": -99.973285 } } ], "representative": { "id": "F775_25848", "score": -99.958082 } } ], "representative": { "id": "F775_25848", "score": -99.909559 } } ], "representative": { "id": "F775_25848", "score": -99.876557 } } ], "representative": { "id": "F775_25848", "score": -99.86214500000001 } }, { "node_id": 4738373, "distance_to_parent": 0.051329, "left_index": 1431, "right_index": 1524, "taxon_id": 4479, "taxon_name": "Poaceae", "node_type": "speciation", "bootstrap": 90, "children": [ { "node_id": 4738375, "distance_to_parent": 0.032962, "left_index": 1510, "right_index": 1523, "taxon_id": 147369, "taxon_name": "Panicoideae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425679, "distance_to_parent": 0.030073, "left_index": 1521, "right_index": 1522, "protein_stable_id": "Si009214m", "gene_stable_id": "Si009214m.g", "gene_description": "Uncharacterized protein", "sequence": "MEMALRAQSPLCSRGRPLLVVRPAAVLAQSTVGRSRFTGGRLVRCMVSSSDYSKRNPRRTSTPKPKGTASRGGYASRPTAESSTKKIEESSTDEGDLGKSNGTLHIEATEQAGTAAKDEVQATEEADQNQSSASSSTTLDDESIDRKLDEYRGKISALVSSKSEPSSLASVRGQEKPVVGVHEQEGSTTEEHDSSIVDEPPKGRPFAEAVVGYPVKDAEEDQEQYEPEMQAPVEDDVDPEVLKRRLQELADENYSVGNKCFVFPEVVKADSMIYLYLNRSMSTLASEPDVLIKGAFNGWRWNSFTEKLHKSELRGDWWCCELYIPKQAYRLDFVFFNGDTVYENNNHNDFFLEIESDIDEHSFEDFLVEEKRKELERLAAEEAERKRQAEEERRREEERAAMEADRAQAKSEVEMKKEKLHQMLSLASRYSDNLWYIEPNTYRGGDRVRLYYNRSSRPLMHNNEIWMHGGYNNWIDGLSIAERLVKSHEKDGDWWYAEVTLPEKALVLDWVFADGPPGNARNYDNNERQDFHAIVPNNIPEDMFWVEEEHRIFRRLQQERREKEDADRLKAEISAKMKAEMKEKTMRAFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGKPEVWFRGSFNRWTHPSGPLPPQKMVKAENGSHLQATVRVPLDAYMLDFVFSESEDGGIYDNRNGMDYHIPVLDSVAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHKVEVILPKYDCLNLSNVKDLHYQQSFAWGGTEIKVWFGKVEDLPVYFLEPQNGMFWVGCVYGKNDESRFGFFCHSALEFLLERGSSPDIIHCHDWSSAPVAWLYKEQYALNGLGNGRVVFTIHNLEFGAHHIGKAMAHCDKATTVSDTYSKEVAGHGAIAPHYFKFHGIRNGIDPDIWDPYTDSFIPVHYTSENVAEGKSAAKKALQQKLGLQQTDTPIVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAPDPRIQGDFTNLASQLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSIPIVRKTGGLYDTVFDVDNDKDRAQAQGLEPNGFSFEGADSSGVDYALDRAITTFYDARDWFNSLCKRVMEQDWSWNRPALDYMELYHSARKN", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD4M41DM9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D5M30D2M26D7M4DM51D9M28D13M14D10M266D3M3DM33D6M224D15M141D13M50D24MD13M43D11M11DMDM8D4M44D8M9D3M50D7M58D5M12DM4D6M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 4555, "taxon_name": "Setaria italica", "assembly": "JGIv2.0", "representative": { "id": "Si009214m.g", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 270, "end": 355, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 445, "end": 536, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 607, "end": 696, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 706, "end": 893, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 953, "end": 1075, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 29, 51, 499, 570, 661, 719, 755, 792, 826, 883, 926, 987, 1031, 1069, 1110 ] }, { "node_id": 4738380, "distance_to_parent": 0.030971, "left_index": 1511, "right_index": 1520, "taxon_id": 147429, "taxon_name": "Andropogoneae", "node_type": "speciation", "bootstrap": 85, "children": [ { "node_id": 426070, "distance_to_parent": 0.017536, "left_index": 1518, "right_index": 1519, "protein_stable_id": "KXG27148", "gene_stable_id": "SORBI_006G221000", "gene_description": "hypothetical protein", "sequence": "MEMNLRAQSPLCSRGRPALVVRPAAAATGLTLSVMRCSRFTRGELVRCMVSSSDYPKRNPRRTSTSKSKGVASGGYASRPTAESSTKKIEQSSNDEGDFSRANGSLYGEATEKASTAEESSQVYFPEDNSSSAERDEAGTEEEADQNQSSVLSSASMDDDSIDRKLDEYRGKISALVSSKPEPSWPASVAGQSESVGGVHGQDGPIIGSEDHDSSTVDAPIKGRPFAEAVVGYKDFTESAAGKATIENEKEQTVSLEDVVGINTDAEEELSVSEDDPEVLLRRFQELADENDSIGNNCFVFPEVVKADSVIDLYLNRSMSALASESNVFVKGAFNGWRWNAFTETLHKSELRGDWWCCKLYIPKQAYRLDFVFFNGDSVYENNNHNDFFLEIESDIDEHSFDDFLVEEKQKELERLDAEEAERKRQAEEERRRAEERAAMEADRAQAKSEVEKKKEKLRQMLSSASRYADNLWYIEPNTYRGGDRVRLYYNRSSRPLMHNTEIWMHGGYNNWIDGLSIAEKLVKSHEKEGDWWYAEVTLPERALVLNWVFADGPPGNARNYDNNGRQDFHAIVPNNISDDIFWVDEEHRIFTRLQQERREREGAERIKAEISAKMKAEMKEKTMRAFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGKPEVWFRGSFNRWTHPSGPLPPQKMVKTENGSHLRTTVRVPLDAYMMDFVFSESEEGGIYDNRNGIDYHIPVSDSVAREPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHKVEVILPKYDCLNLSSVKDLHYQQSFTWGGTEIKVWFGKVEDLPVYFLEPQNGMFWVGCVYGKNDESRFGFFCHSALEFLLQKGSSPDIIHCHDWSSAPVAWLYKEQYALNGLGNGRIVFTIHNLEFGAHHIGKAMTHCDKATTVSDTYSKEVAGHGAIAPHYYKFHGIRNGIDPDIWDPYTDKYIPVHYTSENVIEGKSAAKKALQQMLGLQQTDTPVVGIITRLTVQKGIHLIKHAIYRALERNGQVVLLGSAPDPRIQGDFTNLASRLHNEYHGRVKLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSIPIVRKTGGLYDTVFDVDNDKDRAQAQGLEPNGFSFEGADSSGVDYALDRAITTFYDARDWFNSLCKRVMEQDWSWNRPALDYMELYHSARKN", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD5M38D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M14D11M178D3M2D3M70D12M3DM33D6M224D15M141D13M50D24MD14M41D12M11DMDM8D4M44D7M11D2M40D22M47D11M12DM4D6M6DM13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 4558, "taxon_name": "Sorghum bicolor", "assembly": "Sorghum_bicolor_v2", "representative": { "id": "SORBI_006G221000", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 308, "end": 393, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 483, "end": 574, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 645, "end": 734, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 744, "end": 931, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 32, 54, 537, 608, 699, 757, 793, 830, 864, 921, 964, 1025, 1069, 1107, 1148 ] }, { "node_id": 4738384, "distance_to_parent": 0.00718, "left_index": 1512, "right_index": 1517, "taxon_id": 4577, "taxon_name": "Zea mays", "node_type": "duplication", "bootstrap": 85, "duplication_confidence_score": 1, "children": [ { "node_id": 425910, "distance_to_parent": 0.023114, "left_index": 1515, "right_index": 1516, "protein_stable_id": "Zm00001d002256_P012", "gene_stable_id": "Zm00001d002256", "gene_description": "", "sequence": "METNLRAQSPLCSRTRPALAVRPDAAATGLTLSVIRRSRFTRGGLVRCMVSSSDYHKSSPRRTSTSKSKGVPSGGYASRPTAESSTKKIEQSSDDEGDFSRTNGSLYGEAAEQASTAEESSQVYSTGDISSSAERGEAGTEEEADQNQSSALFSVSVDDDSIDRKLDEYRGKISALASSKPKSSSLASVAGQNEPVGGQEEPVTGSKEHDSSIVDAPIRGRPFAEAVVGYKDFTESVAGMAASKNEEEQLVSLEDVVGISTDADIEAPVEDDVDPEVLLRRLQELADENYLIGNNCFSFPEVVMADSMIDLYLNRSMSALASESNVFVKGAFNGWRWNAFTETMHKSELRGDWWCCKLYIPKQAYRLDFVFFNGDTVYENNNHNDFFLEIESGIDEHSFEDFLVEEKRKELERLAAEEAERKIQAEEERKRGEERAAMEADRAQARSEVEMKKEKLRQLLSSASRYADNLWYIEPNTYRGGDRVRLYYHRSSRPLMHDTEIWMHGGYNNWIDGLSIAERLVKSHEKEGDWWYAEVTLPERALLFDWVFADGPPGNARNYDNNGRQDFHAIVPNNISDDIFWVEEEHRIFTRLQQERREREGAERIKAERSAKMKAEMKEKTMRAFLLSQKHIVYTEPLEVHAGTTVDILYNPSNTVLNGKTEVWFRGSFNRWTHPSGPLPPQKMVKAENGSHLRTTVRVPLDAYMMDFVFSESEGGIYDNRNGMDYHIPVSDSVAREPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHKVEVILPKYDCLNLNSVKDLRYQQSFTWGGTEIKVWFGKVEDLPVYFLEPQNGMFWVGCVYGKNDESRFGFFCHSALEFLLQKGSSPDIIHCHDWSSAPVAWLYKEHYALNGIGNGRIVFTIHNLEFGAHHIGKAMAHCDKATTVSDTYSKEVAGHGAIAPHYYKFHGIRNGIDPDIWDPYTDKFIPVHYTSENVVEGKSAAKKALQQMLGLQQTDTPVVGIITRLTVQKGIHLIKHAMHRALERNGQVVLLGSAPDPRIQSDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSIPVVRKTGGLYDTVFDVDNDKDRAQAQGLEPNGFSFEGADSSGVDYALDRAITTFYDARDWFNSLCKRVMEQDWSWNRPALDYMELYHSARKS", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD5M38D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M14D11M178D3M2D3M70D12M3DM33D6M224D15M141D13M50D24MD3M3D8M41D12M11DMDM8D4M44D7M11D2M40D22M47D11M12DM4D6M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11DMD6M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 4577, "taxon_name": "Zea mays", "assembly": "AGPv4", "representative": { "id": "Zm00001d002256", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 306, "end": 391, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 481, "end": 572, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 643, "end": 731, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 741, "end": 928, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 989, "end": 1110, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 32, 54, 535, 606, 697, 754, 790, 827, 861, 918, 961, 1022, 1066, 1104, 1145 ] }, { "node_id": 425781, "distance_to_parent": 0.019439, "left_index": 1513, "right_index": 1514, "protein_stable_id": "Zm00001d026337_P013", "gene_stable_id": "Zm00001d026337", "gene_description": "", "sequence": "MEMNLRAESPLCSRGRPALVVRPAAAATGLALSVVRCSRFTRGGLVRCMVSSSDYPKRNPRRASTSKSKGVASGGYASRPTAESSTKKIEQSRNNEGDFSRANGSLYGEAAEQASTAEESSQVYMTGDILSGAERDGAGTEEEADQNQSSALPSASMDDDSIDRQLDEYRGKISALVSSKPEPSSLASVAGQNESVGGFHGQHEPITGSEEHGSSIVDAPTKGRLFAEAVVGHKDFTESAAGKASSENEEGQAVSLEDDVGISTDADEELPVSEDDPEVLLRRLQELADENYSTGNNCFVFPEVVKADSMIDLYLNRSMSALASESDVFVKGAFNGWRWNRFTETMHRSELRGDWWCCKLYIPKQAYRLDFVFFNGDTVYENNNHNDFFLEIESDIDEHSFEDFLVEEKRKELERLAAEEAERKRQAEERHRREEERAAMEADRAQARSEVEMKKEKLRQMLSSASRYAENLWYIEPNTYRGGDRVRLYYNRSSRSLMHNTEIWMHGGYNNWIDGLSIAERLVKSHEKEGDWWYVEVTLPERALVLDWVFADGPPGNAWNYDNNGRQDFHAIVPNNISDDIFWVEEEHRIFTRLQQERRERESAERIKAERSAKMKAEMKEKTMRAFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGKSEVWFRGSFNRWTHPSGPLPPQKMVKAENSSHLRTTVSVPLDAYMMDFVFSESEEGGRYDNRNGMDYHIPVSDSVAREPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHKVEVILPKYDCLILSSVKDLHYQQSFASGGTEVKVWFGKVEDLPVYFLEPQNGMFWVGCVYGKNDESRFGFFCHSALEFLLQKGSSPDIIHCHDWSSAPVAWLYKEQYALNGMGNGRIVFTIHNLEFGAHHIGKAMAHCDKATTVSDTYSKEVAGHGAIAPHYYKFHGIRNGIDPDIWDPYTDRFIPVHYTSENVLEGKSAAKKALQQMLGLQQTDSPVVGIITRLTVQKGIHLIKHAMHRALERNGQVVLLGSAPDHRIQGDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAQAQGLEPNGFSFEGADSSGVDYALDRAITAFYDARDWFNSLSKRVMEQDWSWNRPALDYMELYHSARKN", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD5M38D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M14D11M178D3M2D3M70D12M3DM33D6M224D15M141D13M50D24MD14M41D12M11DMDM8D4M44D7M11D2M40D22M47D11M12DM4D6M6DM13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 4577, "taxon_name": "Zea mays", "assembly": "AGPv4", "representative": { "id": "Zm00001d026337", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 308, "end": 393, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 483, "end": 574, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 645, "end": 734, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 744, "end": 931, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 992, "end": 1112, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 32, 54, 537, 608, 699, 757, 793, 830, 864, 921, 964, 1025, 1069, 1107, 1148 ] } ], "representative": { "id": "Zm00001d026337", "score": 0.019439 } } ], "representative": { "id": "SORBI_006G221000", "score": 0.017536 } } ], "representative": { "id": "Si009214m.g", "score": 0.030073 } }, { "node_id": 4738393, "distance_to_parent": 0.01641, "left_index": 1432, "right_index": 1509, "taxon_id": 359160, "taxon_name": "BEP clade", "node_type": "speciation", "bootstrap": 90, "children": [ { "node_id": 4738457, "distance_to_parent": 0.02966, "left_index": 1483, "right_index": 1508, "taxon_id": 147368, "taxon_name": "Pooideae", "node_type": "speciation", "bootstrap": 96, "children": [ { "node_id": 425862, "distance_to_parent": 0.040822, "left_index": 1506, "right_index": 1507, "protein_stable_id": "BRADI5G22310.1", "gene_stable_id": "BRADI5G22310", "sequence": "MEMALRAQSPLCSRSRPVLVVRPANAAAALAQPIVKCSRFTRSRLVRCMVASSDYPKRNPRRSSTPKPKGTASRGYAPRPAAESSTKKIEQSSTDEGDLARSNVMLGSAGIEQTGTAEESSEVDLSGNVPSSEALEGVNETENEEEIDQKLPPALSSTSMDAESISEAADQTSTVEEASEVDFSGNVSSSTALEGVNEAEAEEKVDQKQTSALASTSMDVESIDRELEEYRGKISALVASNPGPSSLASNQGQDKPIFGVHEQDKSVINFHEQGISIVDVSKQSQLAVGVTEEDPTKQTTIIGEQDIAEEAVEDIDSKFFEDGQLALSEDDAGTSKYAQEEPSVAGDQLRISEDGHDEPEIQELVQKDVNLQVLKRRLEELANENYSIGYKCFVFPEIVKADSVIDLYLNRSITALASESTILIKGAFNGWRWNLFTEKMHRSELAGDWWCCKLHIPKQAYRLDFVFFNGDTVYENNNYNDFFIEIESDMDEHSFEDFLVHEKQRELERLAAEEAERERQAEEERRKEEERAIMEAYRAQAKAEVETMKNRLQHVLGSASRHMDNLWYIEPSTYKGGDRVRLYYNRNLRPLMHSNEIWLHGGYNNWTDALSIAERLVKSHEKDGDWWYANVTLPKSALVLDWVFADGPPGNARNYDNNGKRDFHAVVSKSISEDFFWVEEEHRIFKRFQRERKEREDADRRKAEITAKMKAEMKEKTMREFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGSPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLQATVRVPLDAYMMDFVFSESEEGGTYDNRNGMDYHIPVSDSMAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAIQDLGHKVEVIIPKYDCLNLSNVKDLHCCQSFTWSGTEIKVWFGKVEDISVYFLEPQNGMFWVGCVYGRNDESRFGFFCHSALEFLLQSGSSPDIIHCHDWSSAPVAWLYKQQYVHNGLPNGRVVFTIHNLEFGANQIGKAMAHCDKATTVSYTYSREVSRHGSIAPHYFKFHGIRNGIDSDIWDPYNDNFIPVHYTSDNVVEGKSSAKKALQEKLGLHQTDSPVVGIISRLTAQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQSDFTNLARKLHGEFDGRVKLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDDDKERAREQGLEPNGFSFEGADINGVDYALDRAITTWYDARDWFHSLCKRVMEQDWSWNRPALDYMELYHSARKN", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD7M38DM9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M27D3MD10M14D11M7D8M5D18M6D22M102D13M2D3M70D12M3D4M30D6M224D15M141D13M50D24MD14M41D12M11DMDM8D3M45D20M40D30M29D21M12D11M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 15368, "taxon_name": "Brachypodium distachyon", "assembly": "v1.0", "representative": { "id": "BRADI5G22310", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 402, "end": 487, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 577, "end": 668, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 739, "end": 828, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 838, "end": 1026, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1084, "end": 1206, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 32, 54, 631, 702, 793, 851, 887, 924, 958, 1015, 1058, 1119, 1163, 1201, 1242 ] }, { "node_id": 4738459, "distance_to_parent": 0.027619, "left_index": 1484, "right_index": 1505, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 9, "children": [ { "node_id": 425974, "distance_to_parent": 0.015326, "left_index": 1503, "right_index": 1504, "protein_stable_id": "MLOC_54759.1", "gene_stable_id": "MLOC_54759", "gene_description": "Uncharacterized protein", "sequence": "MVASSDYPKRNPRRSSAPKPKGTASRGYAPRPSADSWTSTKKIEHGSADEDGDLGRSNGTLSGDATEQASTAEEESGVEFAGNVSSSAGLEGVAETEEEADQNQPPALSSTSMDVESVNEATEQTIIGDESSVVDFSGNVSGSVALEVVDESETEEEADQKQSSSLASTSMDSESIDRELEGYRARINALVGASTQEQDQSIIGVHDQDKSVISPNEQDISAVDVPEQGLSGVGVTREDPTKQTTSKQEITEAAVEEISSKNFVARKHSISGDGVEASKNANQQPLVDGDELKITEDEEQHEPEMQEYVRKDVDLQALKRRLEELADGNYSIGNKCFVFPELVKADSVIDLYLNRSMSALASEPDILIKGAFNGWRWNHFTERLHKSELSGDWWCCKLYIPKQAYRLDFVFFNGDTVYENNSYNDFVLHIESDIDEHSFEDFLLEEKQRELERLAAEEAERERQAEEERRKEEERAAMEADRAQAKAEVEMTRNNLQHVLGLASRYANNLWYIEPNTYKGGDRVRLYYNRSSGPLKHKNEIWLHGSYNNWTDGPSIVERLVKSDEQDGDWWYANVTLPESALVLDWVFADGPPGNARKYDNNGKRDFHAAVSKSISEDLFWVKEEHRIFERLQRERKEKEDAGRRKAEITARMKAEMKEKTMREFLLSQKHIVYTEPLEVRAGMTVDVLYNPSNTVLNGSPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLQATVRVPLDAYMMDFVFSESEEGGMYDNRDGMDYHIPVSDSMAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAIQDLGHKVEVVFPKYDCLNLSNVKDLHCRQSFTWGGTEIKVWFGKVEGISVYFLEPQNGMFWVGCVYGRNDESRFGFFCHSALEFLLQSGSSPDIIHCHDWSSAPVAWLYKQHYVHNGLPNGRVVFTIHNLEFGVHHIGKAMAHCDKATTVSYTYSKEVSGHGSIAPHYFKFHGIRNGIDSDIWDPYNDNFIPVHYTSENVVEGKSSAKRALQEKLGLHQTDSPLVGIISRLTAQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFSNLASKLHGEFDGRVKLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAREQGLEPNGFSFEGADSNGVDYALDRAITTWYDARGWFHSLCKRVMEQDWSWNRPALDYMELYHSARKN", "cigar": "1343DM10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4D2M49D10M27D14M14D11M7D8M5D14M2D2M6D22M102D13M2D3M70D12M3D4M30D6M224D15M141D13M50D8M8D8MD14M41D12M11DMDM8D3M45D14M2D4M40D30M29D21M11D12M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 112509, "taxon_name": "Hordeum vulgare subsp. vulgare", "assembly": "ASM32608v1", "representative": { "id": "MLOC_54759", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 346, "end": 431, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 521, "end": 612, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 683, "end": 772, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 782, "end": 969, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1028, "end": 1150, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 6, 575, 646, 737, 795, 831, 868, 902, 959, 1002, 1063, 1107, 1145, 1186 ] }, { "node_id": 4738461, "distance_to_parent": 0.009544, "left_index": 1485, "right_index": 1502, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 2, "children": [ { "node_id": 426028, "distance_to_parent": 0.004888, "left_index": 1500, "right_index": 1501, "protein_stable_id": "TRIAE_CS42_2BL_TGACv1_131141_AA0423210.1", "gene_stable_id": "TRIAE_CS42_2BL_TGACv1_131141_AA0423210", "sequence": "MEMALRAQSPLCSRSRPVLLVRPASAAAVPCLAQSIVKCSRFTRSRLVRCMVASSDYPKRNPRRSSAPKPKGTASREYAPRPSAESWTSTKKTEHSSADEDGDLGASNGTLSSDTAEQTSTAEEEYEVEFSGNVSSSVELKGVNEEEVDQKQPPALSSTSMDAESVNEATEHTSTADESSEVDFSGNVSSSVVLEVVDESETEEEADQKQSSASSTSMDVESIDRELEGYRVRISALVGASTQGQDQSIIGVHEQDKSVITSDEQDISAVDVPEQSQSVVAVTREDTTEQTTSEQDITEAVVEEIASKNLVARKHSSSEDGVGARKHANEEPLVAGDELRVTEDEEQHEPEMQEQVKMDVDPQALKRRLEELADKNYSIGNKCFVFPELVEADSVIDLYLNRSMSALANEPDILIKGAFNGWRWNHFTEKLHRSELTGDWWCCKLYLPKQAYRLDFVFFNGDTVYENNSYNDFVLHIESDIDEHSFEDFLLEEKQRELERLAAEEAERERQAEEERRKEEERAAMEADRAQAKAEVETTRNKLQHVLGLASRYVDNLWYIQPSTYKGGDRVRLYYNRSSRPLKHKNEIWLHGGYNNWTDGPSIVERLVKSEEKDGDWWYANVTLPESALVLDWVFADGSPGNASKYDNNGKQDFHAAVSKSISDDLFWVEEERRIFERLQRERKEKEDACRRKAEITARMKADMKEKTMREFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGSPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLQATVRVPLDAYMMDFVFSESEEGGIYDNRDGMDYHIPVSDSMAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAIQDLGHKVEVIFPKYDCLNLSNVKDLHCRQSFTWGGTEIKIWFGKVEGISVYFLEPQNGMFWVGCVYGKNDESRFGFFCHSALEFLLQSGSSPDIIHCHDWSSAPVAWLYKQQYVHNGLPNGRVVFTIHNLEFGVHHIGKAMAHCDKATTVSYTYSKEVSGHGSIAPHYFKFHGIRNGIDSDIWDPYNDNFIPVHYTSENVVEGKSSAKRALQEKLGLHQTDSPLVGIISRLTAQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFSNLAAKLHGEFDGRVKLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAREQGLEPNGFSFEGADSNGVDYALDRAITTWYDARDWFHSLCKRVMEQDWSWNRPALDYMELYHSARKN", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD7M36D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4D2M49D10M27D14M14D11M7D8M5D14M10D22M102D13M2D3M70D12M3D4M30D6M224D9MD5M141D13M50D8M8D8MD14M41D12M11DMDM8D3M45D14M2D4M40D30M29D21M11D12M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_2BL_TGACv1_131141_AA0423210", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 393, "end": 478, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 568, "end": 659, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 730, "end": 819, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 829, "end": 1015, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1075, "end": 1197, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 34, 56, 622, 693, 784, 842, 878, 915, 949, 1006, 1049, 1110, 1154, 1192, 1233 ] }, { "node_id": 4738464, "distance_to_parent": 0.002147, "left_index": 1486, "right_index": 1499, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "dubious", "bootstrap": 2, "duplication_confidence_score": 0, "children": [ { "node_id": 425902, "distance_to_parent": 0.005867, "left_index": 1497, "right_index": 1498, "protein_stable_id": "TRIAE_CS42_2DL_TGACv1_159587_AA0540290.1", "gene_stable_id": "TRIAE_CS42_2DL_TGACv1_159587_AA0540290", "gene_description": "Starch synthase 3, chloroplastic/amyloplastic", "sequence": "MYVLFRSPFLLVCIFLFRSLHSYWWARLCGAARPRKEYLTAELLTFRCFPQVHLACNPLVAPGRRITRGSRTGLGPRDENKGESSELTSNSDTFTPGTLYGMRTKSIVKCSRFTRRRLVRCMVASSDYPKRNPRRSSAPKPKGTASRGYAPRPSAESWTSTKKTEHSSADEDGDLGTSNGTLSSETTEQTSIAEEEYEVEFSGNVSSSMELKGVNEVETEEEADQKQPPALASTSMDVESTSIADESSEVDFSGNVSSSVVLEVVDESETEEEADQKQSSALASTSMDVESIDRELEEYRVRISALVGFSTQGQDQSIIGVHEQDKLVITSDEQDISAVDVPEESQSVVGVTREDTTEQTTSEQDITEAVVEEIASKNLVARKHSSSEDGVGASKDANEEPLVAGDELRVTEDEEQHEPEMQEQVPMDVDPQALKRRLAELADKNYSIGNKCFVFPELVEADSVIDLYLNRSMSALASEPDILIKGAFNGWRWNHFTEKLHRSELIGDWWCCKLYIPKQAYRLDFVFFNGDTVYENNSYNDFVLHIESDIDEYSFEDFLLEEKQRELERLAAEEAERERQVEEERRKEEERAAMEADRAQSKAEVEMMRNKLQHVLGLASRYADNLWYIEPSTYKGGDRVRLYYNRSSRPLNNKNEIWLHGGYNNWTDGPSIVERLVKSEEKDGDWWYANVTLPESALVLDWVFADGSPGNASKYDNNGKRDFHAAVSKSISDDLFWVEEERRIFERLQRERKEKEDAGRRKAEITARMKAEMKEKTMREFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGSPEVWFRCSFNRWTHPSGPLPPQKMVNEVNGSHLQATVRVPLDAYMMDFVFSESEEGGIYDNRDGMDYHIPVSDSTAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAIQDLGHKVEVIFPKYDCLNLSNVKDLHCRQSFTWGGTEIKVWFGKVEGISVYFLEPQNGMFWVGCVYGKNDESRFGFFCHSALEFLLQSGSSPDIIHCHDWSSAPVAWLYKQQYVHNGLPNGRVVFTIHNLEFGVHHIGKAMAHCDKATTVSYTYSKEVSGHGSIAPHYFKFHGIRNGIDSDIWDPYNDNFIPVHYTSENVVEGKSSAKRALQEKLGLHQTDSPLVGIISRLTAQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFSNLAAKLHGEFDGRVKLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAREQGLEPNGFSFEGADSNGVDYALDRAITTWYDARDWFHSLCKRVMEQDWSWNRPALDYMELYHSTRKN", "cigar": "432D2M94DMDM79D25M57D3M447D4M12D3MD7M36D3M9D63M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4D2M49D10M27D14M14D11M7D8M5D18M6D21M109D7M2D3M70D12M3D4M30D6M224D15M141D13M50D8M8D8MD14M41D12M11DMDM8D3M45D14M2D4M40D30M29D21M11D12M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_2DL_TGACv1_159587_AA0540290", "score": -100 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 462, "end": 547, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 637, "end": 728, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 799, "end": 888, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 898, "end": 1085, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1144, "end": 1266, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 60, 105, 127, 249, 691, 762, 853, 911, 947, 984, 1018, 1075, 1118, 1179, 1223, 1261, 1302 ] }, { "node_id": 4738467, "distance_to_parent": 0.038459, "left_index": 1487, "right_index": 1496, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 88, "children": [ { "node_id": 425736, "distance_to_parent": 0.007008, "left_index": 1494, "right_index": 1495, "protein_stable_id": "EMT29905", "gene_stable_id": "F775_05914", "gene_description": "Soluble starch synthase 3, chloroplastic/amyloplastic", "sequence": "MALRAQSPLCSRSRPVLLRRPASAAAVPCLAQSIVKCSRFTRSRLVRCMVASSDYPKRNPRRSSAPKPKGTASRGYAPRPSAESWTSTKKTEHSSADEDGDLGTSNGTLSSEATEQTSSAEEEYEVEFSGNVSSSMELKGVNEVETEEEADQKQPPALASTSMDVESTSTADESSEVDFSGNVSSSVELKGVNEVETEEEADQKQPPALASTSMDVDSVNEATEQTSTADESSEVDFSGNVSSSLELEVVDESETEEEADQKQSSALASTSMDSESIDRELEEYRVRISALVGASTQGQDQSIISVHEQDKSVITSDGQDISAVDVPEQSQSVVGVTRKDPMEQTTSEQDIAEAAVEEIASKNLVARKHSSSEDGVGASKDANEEPLVAGDELRVTEDEEQHEPEMQEQVQMDVDPQALKRRLEELADKNYSIGNKCFVFPELVEADSVIDLYLNRSMSALASEPDILIKGAFNGWRWNHFTEKLHRSELTGDWWCCKLYIPKQAYRLDFVFFNGDTVYENNSYNDFVLHIESDIDEYSFEDFLLEEKQRELERLAAEEAERERQAEEERRKEEERAAMEADRAQSKAEVEMMRNKLQHVLGLASRYADNLWYIEPSTYKGGDRVRLYYNRSSRPLNHKNEIWLHGGYNNWTDGPSIVERLVKSEEKDGDWWYANVTLPESALVLDWVFADGSPGNANKYDNNGKRDFHAAVSKSISDDLFWVEEERRIFERLQRERKEKEDAGRRKAEITARMKAEMKEKTMREFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGSPEVWFRCSFNRWTHPSGPLPPQKMVNEVNGSHLQATVRVPLDAYMMDFVFSESEEGGIYDNRDGMDYHIPVSDSTAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAIQDLGHKVEVIFPKYDCLNLSNVKDLHCRQSFTWGGTEIKVWFGKVEGISVYFLEPQNGMFWVGCVYGKNDESRFGFFCHSALEFLLQSGSSPDIIHCHDWSSAPVAWLYKQQYVHNGLPNGRVVFTIHNLEFGVHHIGKAMAHCDKATTVSYTYSKEVSGHGSIAPHYFKFHGIRNGIDSDIWDPYNDNFIPVHYTSENVVEGKSSAKRALQEKLGLHQTDSPLVGIISRLTAQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFSNLAAKLHGEFDGRVKLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAHEQGLEPNGFSFEGADSNGVDYALDRQGEEQMKFREWVCQVLRHANVSLHMPFSGSHSLGSEKKYWVSASLCDRLRCTGHEPNVYHSGCLARQLFSCLQAVARLRFLPGMKSRPQTKLAQSVPLRRALLGVPPEHDGIEDKVSETCGHGQRPVVKKYNLCGYQGDIGVALY", "cigar": "432D2M94DMDM79D4M19D2M57D3M447D4M12D3MD7M36D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4D2M49D10M27D14M14D11M7D8M5D18M6D23MD18MD28MD2M48D15M2D3M70D12M3D4M30D6M224D15M141D13M50D8M8D8MD14M41D12M11DMDM8D3M45D14M2D4M40D30M29D21M11D12M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21D36M10D5M2D16M4DM8D4M2D12M3DM4D15MD4M3DM14DM218DM340DM255DM12D3M104D4M61D3M2D8M149DM287D13M8D3M504D", "taxon_id": 37682, "taxon_name": "Aegilops tauschii", "assembly": "ASM34733v1", "representative": { "id": "F775_05914", "score": -100 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 447, "end": 532, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 622, "end": 713, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 784, "end": 873, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 883, "end": 1070, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1129, "end": 1251, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 32, 54, 676, 747, 838, 896, 932, 969, 1003, 1060, 1103, 1164, 1208, 1246, 1288, 1338, 1394, 1417 ] }, { "node_id": 4738471, "distance_to_parent": 0.047475, "left_index": 1488, "right_index": 1493, "taxon_id": 4564, "taxon_name": "Triticum", "node_type": "speciation", "bootstrap": 95, "children": [ { "node_id": 425835, "distance_to_parent": 0.024669, "left_index": 1491, "right_index": 1492, "protein_stable_id": "TRIAE_CS42_2AL_TGACv1_093876_AA0288560.2", "gene_stable_id": "TRIAE_CS42_2AL_TGACv1_093876_AA0288560", "sequence": "MEMALRAQSPLCSRSRPVLLVRPAVPGLAQPIVKCSRFARSRLVRCMVASSDYPKRNPRRSSAPKPKGTASRGYAPRPSTESWTSTKKTEHSSADEDADLGTRNGTLSSEATEQTSTAEEEYEVEFSGNVSSSVELKGVSEEEVDQKQPPALSSTSMDVESTDESSEVDFSGNVSSSTELKGVNEVGTEEEAGQKQPPALASTSMGVESVNEATEQTSTADESSEVDFSGNVSSSVVLEVVDESETEEEADQKQSSALASTSMDSESIDRELEEYRVRISALVGASTRGKDQSSIGFHGQDKSVITSDEQDISAVDVPQQSQSVVGVTREDPTEQTTSKNLMARKHSSSEDGVGASKDANEEPLVAGDELRITEDEEQREPEMQEQVQMDVDPQALKRRLEELADENYSIGNKCFVFPQLVEADSVIDLYLNRSMSALASEPDILIKGAFNGWRWNHFTEKLRRSELTGDWWCCKLYIPKQAYRLDFVFFNGDTVYENNSYNDFVLHIESDIDEHSFEDFLLEEKQRELERLAAEEAERERQAEEERRKEEERAAMEADRAQAKAEVEMTRNKLQHVLGLASRYADNLWYIQPSTYKGGDRVRLYYNRSSRPLKHKNEIWLHGGYNNWTDGPSIVERLVKSEEKDGDWWYANVTLPESALVLDWVFADGSPGNASKYDNNGKQDFHAAVSKSISDDLFWVEEERRIFERLQRERTEKEDAGRRKAEITARMKAEMKEKTMREFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTLLNGSPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLQATVRVPLDAYMMDFVFSESEEGGIYDNRDGMDYHIPVSDSMAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAIQDLGHKVEVIFPKYDCLNLSNVKDLHCRQSFTWGGTEIKVWFGKVEGISVYFLEPQNGMFWVGCVYGRNDESRFGFFCHSALEFLLQSGSSPVSTKLCPISLSITVLGFILLI", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MDM4D2M36D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4D2M49D10M27D14M14D11M7D8M5D13M4DM6D22M4D16MD28MD2M48D15M2D3M70D12M3D4M30D6M224D15M141D13M50D8M8D8MD14M41D12M11DMDM8D3M45D14M56D20M29D21M11D12M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM238D2M495D2M6D2M120D2M264D8M1602D2M150D3M350D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_2AL_TGACv1_093876_AA0288560", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 424, "end": 509, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 599, "end": 690, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 761, "end": 850, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 860, "end": 975, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 30, 52, 653, 724, 815, 873, 909, 946 ] }, { "node_id": 425649, "distance_to_parent": 0.015934, "left_index": 1489, "right_index": 1490, "protein_stable_id": "TRIUR3_19951-P1", "gene_stable_id": "TRIUR3_19951", "gene_description": "Soluble starch synthase 3, chloroplastic/amyloplastic", "sequence": "MEMALRAQSPLCSRSRPVLLVRPAVPGLAQPIVKCSRFARSRLVRCMVASSDYPKRNPRRSSAPKPKGTASRGYAPRPSTESWTSTKKTEHSSADEDADLGTSNGTLSSEATEQTSTAEEEYEVEFSGNVSSSVELKGVSEEEVDQKQPPALSSTSMDVESTDESSEVDFSGNVSSSTELKGVNEVGTEEEAGQKQPPALASTSMGVESVNEATEQTSTADESSEVDFSGNVSSSVVLEVVDESETEEEADQKQSSALASTSMDSESIDRELEEYRVRISALVGASTRGKDQSSIGFHGQDKSVITSDEQDISAVDVPQQSQSVVGVTREDPTEQTTSKNLMARKHSSSEDGVGASKDANEEPLVAGDELRITEDEEQREPEMQEQVQMDVDPQALKRRLEELADENYSIGNKCFVFPQLVEADSVIDLYLNRSMSALASEPDILIKGAFNGWRWNHFTEKLRRSELTGDWWCCKLYIPKQAYRLDFVFFNGDTVYENNSYNDFVLHIESDIDEHSFEDFLLEEKQRELERLAAEEAERERQAEEERRKEEERAAMEADRAQAKAEVEMTRNKLQHVLGLACRYADNLWYIQPSTYKGGDRVRLYYNRSSRPLKHKNEIWLHGGYNNWTDGPSIVERLVKSEEKDGDWWYANVTLPESALVLDWVFADGSPGNASKYDNNGKQDFHAAVSKSISDDLFWVEEERRIFERLQRERTEKEDAGRRKAEITARMKAEMKEKTMREFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGSPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLQATVRVPLDAYMMDFVFSESEEGGIYDNRDGMDYHIPVSDSMAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAIQDLGHKVEVIFPKYDCLNLSNVKDLHCRQSFTWGGTEIKVWFGKVEGISVYFLEPQNGMFWVGCVYGRNDESRFGFFCHSALEFLLQSGSSPDIIHCHDWSSAPVAWLYKQHYVHNGLPNGRVVFTIHNLEFGVNHIGKAMAHCDKATTVSYTYSKEVSGHGSIAPHYFKFHGIRNGIDSDIWDPYNDNYIPVHYTSENVVEGKSSAKRALQEKLGLHQTDSPLVGIISRLTAQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFSNLAAKLHGEFDGRVKLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPIVRKTGGRSPHGTTLATGFTPSASGSWSRIGPGTGLLWTTWNCTIPRARTETLSWQGEEQMKFREWVCQVLRHANVSLHMPFSGSHSLGSEKKYWASASLCDRLRCELFTLSIDHDIAACDTQTSNVAHGKVRSSGSLQFLQTCTNANMFILRLCSP", "cigar": "193DM237D3M94DMDM79D4M19D2M57D3M447D4M12D3MDM4D2M36D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4D2M49D10M27D14M14D11M7D8M5D13M4DM6D22M4D16MD28MD2M48D15M2D3M70D12M3D4M30D6M224D15M141D13M50D8M8D8MD14M41D12M11DMDM8D3M45D14M56D20M29D21M11D12M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D9M17DM9DM12D7MD5M7D4M8D9M20D21M15DM28D2M11D2M22D3M3DM15D2M21D36M10D4M17D2M4DM8DM44DM3DM14DM218DM340DM255DM11D4M104D4M61D3M2D4M2D2M149DM287D13M8D4M150D6M347D", "taxon_id": 4572, "taxon_name": "Triticum urartu", "assembly": "ASM34745v1", "representative": { "id": "TRIUR3_19951", "score": -100 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 424, "end": 509, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 599, "end": 690, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 761, "end": 850, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 860, "end": 1047, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 30, 52, 653, 724, 815, 873, 909, 946, 980, 1037, 1080, 1141, 1185, 1223 ] } ], "representative": { "id": "TRIUR3_19951", "score": -99.984066 } } ], "representative": { "id": "F775_05914", "score": -99.992992 } } ], "representative": { "id": "TRIAE_CS42_2DL_TGACv1_159587_AA0540290", "score": -99.994133 } } ], "representative": { "id": "TRIAE_CS42_2DL_TGACv1_159587_AA0540290", "score": -99.99198600000001 } } ], "representative": { "id": "TRIAE_CS42_2DL_TGACv1_159587_AA0540290", "score": -99.982442 } } ], "representative": { "id": "TRIAE_CS42_2DL_TGACv1_159587_AA0540290", "score": -99.954823 } }, { "node_id": 4738398, "distance_to_parent": 0.029481, "left_index": 1433, "right_index": 1482, "taxon_id": 147380, "taxon_name": "Oryzeae", "node_type": "speciation", "bootstrap": 92, "children": [ { "node_id": 425880, "distance_to_parent": 0.070151, "left_index": 1480, "right_index": 1481, "protein_stable_id": "LPERR04G21480.1", "gene_stable_id": "LPERR04G21480", "sequence": "MEMALRAAHSPLCSRSRPVLVVRPATAAAGSGFVQPIVRCSRFTRSRHLRYMVASSDYSKKNPRRASTPKPKGAASRTYAPRPTVESSTKKIEQSSTSEGDFGRSNGKLSSEATGQTSNIEESSEVNFYGNVSSSASLEGADSAFEGESEEEGGQNLSPELSPESMDDDALDRKLDEYRGKISALINSKPDPTSISSTYVQDRSIVRVPEQSKPSDDVIGQHPTEERTVTSGQGITEESPEGMISKSVEGEQLSREAKETLLAEDDLGITMDEQDEPDIASIQDGVDPQVLMRQLEELAEKNYSAGNNCFVFPEVGKADSIIDLYLNRSMSALANDSNVLIKGAFNGWRWKSFTEKLRKSDLRGDWWCCKLHIPKQAYRLDFVFFNGDTIYENNNYNDFALQIESDMDEQSFEDFLVEEKQRELERLAAEEAERVRQAEEERRKAEERAEMEADKAQAKAEVEMNRNKLQSVLSSASRYADNLWYIEPSTYKAGDRVKLFYNRSSRPLMHNTEIWMHGGYNNWSDGLSISERLVKSYEKDGDWWYADVTLPERALMLDWVFADGPPGNARNYDNNGRKDFHAIVPNNISKDLFWVEEEHIIFRRLQKERKEREEADRRKAEVTGKIKAEMKEKTMREFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGKPEVWFRCSFNRWTHPSGPLPPQKMVSAENGSHLRATVRVPLDAYMMDFVFSESEEGGIYDNRNGMDYHIPVSDSVAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVKDLHLRQSFIWGNTEIKVWFGKVEDVPVYFLEPQNGMFWVGCVYGRNDESRFGFFCHSALEFLRQNGSSPDIIHCHDWSSAPVAWLFKEQYAHNDLSNGRVVFTIHNLEFGAHHIGKAMANCDKATTVSYTYSREVSGHGAIAPHYYKFHGIRNGIDPDIWDPYSDNFIPVHYTSENVVEGKSAAKKALQQKLGLQQTDTPIVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSIPIVRKTGGLYDTVFDIDDDKDRAQEQGLEPNGFSFEGADSNGVDYALDRQSDHHMVRRPRLVPLPLQEGDGARLDMEPTCSGLHGIVPFRSQELKHHWRQQQIDFCK", "cigar": "193DM237D3M94D3M79D4M19D2M57D3M447D4M12D3MD7M36D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M14D11M178D3M2D3M70D12M3D4M6D3M21D6M224D15M141D13M50D21M62D9M11DMDM8D3M45D20M40D23M39D18M12D4MD6M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D20M28D2M11D2M22D3M3DM15D2M21DM30D13M2D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM1993D", "taxon_id": 77586, "taxon_name": "Leersia perrieri", "assembly": "Lperr_V1.4", "representative": { "id": "LPERR04G21480", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 319, "end": 404, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 494, "end": 585, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 656, "end": 745, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 755, "end": 941, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1002, "end": 1123, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 35, 57, 548, 619, 710, 768, 804, 841, 875, 932, 975, 1036, 1080, 1118, 1160 ] }, { "node_id": 4738406, "distance_to_parent": 0.004698, "left_index": 1434, "right_index": 1479, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 91, "children": [ { "node_id": 425777, "distance_to_parent": 0.036064, "left_index": 1477, "right_index": 1478, "protein_stable_id": "OB04G32800.1", "gene_stable_id": "OB04G32800", "gene_description": "Uncharacterized protein", "sequence": "MEMAHSPLCSRSRPVLVVRPTTAPAAAAAAVTGFVQPIIRCSRFTRSRPLRCTVASSDYSKRNPRRASTPKPKGAASRTFAPRPTIESSLKKIEQSSTDEGDLGRSNGKLSSEATGPKRAVEESSEVDFSGNVSSSASLERVDDAFEAETEEEVEQNLELSSESMDDDDAIDRKLDEYRGKISALISSKPEPTSVSSTHVQDISIVGFHEQENSVVSFHEQDRSIVPVPEQSQSSGGVTGENLMEEKTITSGQDVSEEAPEEITSKSIDGEQLSREPEKALLADDESRIIKDEQYEHNMPVQDVVDPQVLMRQLEELAEKKYSAGNKCFVFPEVVKADSVVDLYLNRSMSALANESDILIKGACNGWRWNAFTEKLHKSKLRGDWWCCKLHIPKQAYRLDFVFFNGDTIYENNNYNDFILQIESDMDEHSFEDFLVEEKQRELERLAAEEAERRRQAEEERRKEEERAAMEADRAQANAEVEKTRNKLQNVLNSANKYADNLWYIEPHTYKAGDRVKLFYNRSSRPLMHNTEIWMHGGYNNWSDGLSISEKLVKSYDKDGDWWYADVTLPQKALVLDWVFADGPPGNAKNYDNNGRQDFHAVVPNNISEDLLWVEEEHTIFRRLQKERKEREDADQRKAEITAKMKAEMKEKTMREFLLSQKHIVYTEPLEVHAGTTVDVLYNPSNTVLNGKPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLRATVRVPLDAYMMDFVFSESEEGGIYDNRNGMDYHIPVSDSIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAIQDLGHNVEVILPKYDCLNLTNVKDLHYRQSFTWGNTEIKVWFGKVEDIPVYFLEPQNGMFWVGCVYGRNDEGRFGFFCHSALEFLRQNGSSPDIIHCHDWSSAPVAWLFKGQYANNELSNGRVVFTIHNLEFGAHHIGKAMAHCDKATTVSYTYSREVSGHGAIAPHYFKFHGIRNGIDPDIWDPYSDNFIPVHYTSENVVEGKSAAKKALQQKLGLQQTDTPVVGIISRLTVQKGIHLIKHAIHRTLERNGQVVLLGSAPDHRIQGDFTNLASKLHGEFHGRVKFCLTYDEPLSHLIYAGADFILVPSMFEPCGLTQLIAMRYGSIPIVRKTGGLYDTVFDIDDDKDRAREQGLEPNGFSFEGADSNGVDYALDRAITTWYDARDFFHSLCKRVMEQDWTWNRPALDYMELYHSARKN", "cigar": "193DM237D3M177D3M19D2M57D3M447D4M12D3MD10M31D5M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M14D11M178D3M2D3M70D12M3D4M6D3M21D6M224D6M2D8M140D13M50D24MD14M41D12M11DMDM8D3M45D20M40D23M39D18M12D4M2D5M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 4533, "taxon_name": "Oryza brachyantha", "assembly": "Oryza_brachyantha.v1.4b", "representative": { "id": "OB04G32800", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 338, "end": 423, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 513, "end": 604, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 675, "end": 764, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 774, "end": 960, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1021, "end": 1142, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 36, 58, 567, 638, 729, 787, 823, 860, 894, 951, 994, 1055, 1099, 1137, 1178, 1222 ] }, { "node_id": 4738408, "distance_to_parent": 0.012319, "left_index": 1435, "right_index": 1476, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 99, "children": [ { "node_id": 425782, "distance_to_parent": 0.065591, "left_index": 1474, "right_index": 1475, "protein_stable_id": "OPUNC04G23440.1", "gene_stable_id": "OPUNC04G23440", "sequence": "MDIRRVENRLDSSCAFRCEFLETRKEKEGNGVSSEEEEDEEDEEEGIRGRRSEVLALAMEMALRAHSPLCSRSRPVLVVRPTTAAAAVTGFAQPIIRCRKFTRSRLLRCMVASSDYSKRNPRRASTPKPKGAASRTYAPRPTVESSMKKIEQSGTDEGDLGRSNGKLSSEAAGQRSHVEESSEVDFSGNVSSSVFLEEIDDTFEAETEEEVEQNQSPELSPESMDDDAIDRKLDEYRGKISALISSKPEPTSVSSIHVQDRSIVGFHEQEKSVVSFHEQDRSIAPVPEQSQPSSGVSGQNLTKEKTIISGQNVTEEAPEEITGKSIEGEPLSREAEEVLFADDDPGIIKDEQYEPDIALVQDDVDPQVLRRRLEELAEKNYLAGNKCFVFPEVVHADSAIDLYLNRSISALASEPDILIKGAFNGWRWKKFTEKLHKSELRGDWWCCKLHIPKQAYRLDFVFFDGDTIYENNNHNDFVLQIESEMDEHSFENFLVEEKQKELERLAAEEAEKKRQAEEERRKEEERAAMEADRAQAKAEVEMNKNKLQNVLNSASRYADNLWYIEPHTYKAGDRVKLFYNRSSRPLMHNTEIWMHGGYNNWSDGLSIAERLVKSYEKDGDWWYADVTLPERTLVLDWVFADGPPGNARNYDNNGRQDFHAVVSNNISEDLFWVEEEHMIFKRLQKERKEREDADRRKAEKTAKMKAEMKEKTMRDFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGKPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLRATVRVPLDAYMMDFVFSESEEGGIYDNRNDMDYHIPVSDSIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVKDLHYRQSFTWGCFGLDVSMEEMTKVDLASSAILLWSFSARMDLLHAPVAWLFKEQYARNGLLNGRVVFTIHNLEFGAHHIGKAMSYCDKATTVSYTYSREVSGHGAIAPHYSKFHGIRNGIDPDIWDPYTDNFIPVHYTSENVVEGKSAAKKALQQKLGLQQTDTPVVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSMFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAREQGLEPNGFSFEGADSNGVDYALDRAITTWYDARDWFHSLCKRVMEQDWTWNRPALDYMELYHSARKN", "cigar": "6MD6M33D2M2D3M52D2M10D10M2D9M3D14M32D7M237D3M94DMDM79D4M19D2M57D3M447D4M12D3MD6M35D5M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M14D11M178D3M2D3M70D12M3D4M6D3M21D6M224D15M141D13M50D24MD14M41D12M11DMDM8D3M45D20M40D23M39D18M12D4MD6M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D2M3D2M3D11M9D4M79DM17D4M23DM11D4M8D8M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 4537, "taxon_name": "Oryza punctata", "assembly": "AVCL00000000", "representative": { "id": "OPUNC04G23440", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 397, "end": 482, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 572, "end": 663, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 734, "end": 823, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 833, "end": 911, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1046, "end": 1167, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 11, 93, 115, 626, 697, 788, 846, 882, 895, 929, 976, 1019, 1080, 1124, 1162, 1203 ] }, { "node_id": 4738413, "distance_to_parent": 0.007893, "left_index": 1436, "right_index": 1473, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 54, "children": [ { "node_id": 4738433, "distance_to_parent": 0.005241, "left_index": 1451, "right_index": 1472, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4738440, "distance_to_parent": 0.001819, "left_index": 1466, "right_index": 1471, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 78, "children": [ { "node_id": 425654, "distance_to_parent": 0, "left_index": 1469, "right_index": 1470, "protein_stable_id": "ORGLA04G0229100.1", "gene_stable_id": "ORGLA04G0229100", "gene_description": "Uncharacterized protein", "sequence": "MEMAHSPLCSRSRPVLVVRPATAATGFAQPIIRCRRFTRTRLLRCLVASADYSKRNPRRASTPKPKGAASRTYAPRPTVESSMKKIGQSGTHEGDLGTSNGKLSSEATEQTSNVEESSEVDFSGNVSSSVFLEGMDDAFEAETEEEVEQNQSPELSSESMDDDAIDRKLDEYRGKISALISSKPEPTSVSSTHVQDRSIVGFHEQEKYVVSFHEQDRSIVSVPEQSQPSSGVSGQNPTEEKTIISGQDVTEEAPEEITGKSIEREPLSRETEKVLFADDDPRIIKDEQYEPDIAPVQDDVDPQVLRRRLEELAEKNYLAGNKCFVFPEVVQADSVIDLYLNRSMSALASEPDILIKGAFNGWRWKKFTQKMHKSELTGDWWCCKLHIPKQAYRLDFVFFNGDTIYENNNHNDFVLQIESEINEHSFEDFLVEEKQRELERLAAEEAERKRQAEEERRKEEKRAAMEADRAQAKAEVEMNKNKLQNLLNSASRYADNLWYIEPHTYKAGDRVKLFYNRSSRPLMHNTEIWMHGGYNNWSDGLSIAEKLIKSYEKDGDWWYADVTLPEGALVLDWVFADGPPGNARNYDNNGRQDFHAVVPNNISEDLFWVEEEHMIFKRLQKERKEREDADRRKSEITAKMKAEMKEKTMRDFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGKPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLRATVRVPLDAYMMDFVFSESEEGGIYDNRNGMDYHIPVTDSVAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVKDLHYRQSFTWGNTEIKVWFGKVEDVPVYFLEPQNGMFWVGCVYGRNDESRFGFFCHSALEFLRQNGSSPDIIHCHDWSSAPVAWLFKEQYAQNGLSNGRVVFTIHNLEFGAHHIGKAMARCDKATTVSYTYSREVSGHGAIAPHFSKFHGIRNGIDPDIWDPYSDNFIPVHYTSENVVEGKSAAKKALQQRLGLQQTDTPVVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSMFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAREQGLEPNGFSFEGADSNGVDYALDRAITTWYDARDWFHSLCKRVMEQDWTWNRPALDYMELYHSARKN", "cigar": "193DM237D3M177D3M19D2M57D3M447D4M12D3MD5M38D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M14D11M178D3M2D3M70D12M3D4M6D3M21D6M224D15M141D13M50D24MD14M41D12M11DMDM8D3M45D20M40D23M39D18M12D4MD6M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 4538, "taxon_name": "Oryza glaberrima", "assembly": "AGI1.1", "representative": { "id": "ORGLA04G0229100", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 333, "end": 418, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 508, "end": 599, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 670, "end": 759, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 769, "end": 955, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1017, "end": 1137, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 29, 51, 562, 633, 724, 782, 818, 855, 889, 946, 989, 1050, 1094, 1132, 1173 ] }, { "node_id": 425647, "distance_to_parent": 0, "left_index": 1467, "right_index": 1468, "protein_stable_id": "OBART04G26440.1", "gene_stable_id": "OBART04G26440", "sequence": "MEMAHSPLCSRSRPVLVVRPATAATGFAQPIIRCRRFTRTRLLRCLVASADYSKRNPRRASTPKPKGAASRTYAPRPTVESSMKKIGQSGTHEGDLGTSNGKLSSEATEQTSNVEESSEVDFSGNVSSSVFLEGMDDAFEAETEEEVEQNQSPELSSESMDDDAIDRKLDEYRGKISALISSKPEPTSVSSTHVQDRSIVGFHEQEKYVVSFHEQDRSIVSVPEQSQPSSGVSGQNPTEEKTIISGQDVTEEAPEEITGKSIEREPLSRETEKVLFADDDPRIIKDEQYEPDIAPVQDDVDPQVLRRRLEELAEKNYLAGNKCFVFPEVVQADSVIDLYLNRSMSALASEPDILIKGAFNGWRWKKFTQKMHKSELTGDWWCCKLHIPKQAYRLDFVFFNGDTIYENNNHNDFVLQIESEINEHSFEDFLVEEKQRELERLAAEEAERKRQAEEERRKEEKRAAMEADRAQAKAEVEMNKNKLQNLLNSASRYADNLWYIEPHTYKAGDRVKLFYNRSSRPLMHNTEIWMHGGYNNWSDGLSIAEKLIKSYEKDGDWWYADVTLPEGALVLDWVFADGPPGNARNYDNNGRQDFHAVVPNNISEDLFWVEEEHMIFKRLQKERKEREDADRRKSEITAKMKAEMKEKTMRDFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGKPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLRATVRVPLDAYMMDFVFSESEEGGIYDNRNGMDYHIPVTDSVAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVKDLHYRQSFTWGNTEIKVWMFWVGCVYGRNDESRFGFFCHSALEFLRQNGSSPDIIHCHDWSSAPVAWLFKEQYAQNGLSNGRVVFTIHNLEFGAHHIGKAMARCDKATTVSYTYSREVSGHGAIAPHFSKFHGIRNGIDPDIWDPYSDNFIPVHYTSENVVEGKSAAKKALQQRLGLQQTDTPVVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSMFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAREQGLEPNGFSFEGADSNGVDYALDRAITTWYDARDWFHSLCKRVMEQDWTWNRPALDYMELYHSARKN", "cigar": "193DM237D3M177D3M19D2M57D3M447D4M12D3MD5M38D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M14D11M178D3M2D3M70D12M3D4M6D3M21D6M224D15M141D13M50D24MD14M41D12M11DMDM8D3M45D20M40D23M39D18M12D4MD6M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D2M29D3M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 65489, "taxon_name": "Oryza barthii", "assembly": "O.barthii_v1", "representative": { "id": "OBART04G26440", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 333, "end": 418, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 508, "end": 599, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 670, "end": 759, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 769, "end": 938, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1000, "end": 1120, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 29, 51, 562, 633, 724, 782, 818, 838, 872, 929, 972, 1033, 1077, 1115, 1156 ] } ], "representative": { "id": "ORGLA04G0229100", "score": 0 } }, { "node_id": 4738446, "distance_to_parent": 0, "left_index": 1452, "right_index": 1465, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "dubious", "bootstrap": 0, "duplication_confidence_score": 0, "children": [ { "node_id": 4738453, "distance_to_parent": 0, "left_index": 1459, "right_index": 1464, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 426058, "distance_to_parent": 0.016356, "left_index": 1462, "right_index": 1463, "protein_stable_id": "ONIVA04G24880.2", "gene_stable_id": "ONIVA04G24880", "sequence": "MPIHRNGEGRHGSRHPSDVPIHISPNQEQPSVATPPGPLTDAPAFCSCLPALRAPPPRHPTPSTQIPHKSSLSPQKIKKKKIAKISRESTGAFLSPSIERARACVCEQHTAAHFDASFWKPEKKKKGRESALRREREEGGGGDQGERREVLALAMEMAHSPLCSRSRPVLVVRPATAATGFAQPIIRCRRFTRTRLLRCLVASADYSKRNPRRASTPKPKGAASRTYAPRPTVESSMKKIGQSGTDEGDLGTSNGKLSSEATEQTSNVEESSEVDFSGNVSSSVFLEGMDDAFEAETEEEVEQNQSPELSSESMDDDAIDRKLDEYRGKISALISSKPEPTSVSSTHVQDRSIFGFHEQENSVVSFHEQDRSIVSVPEQSQPSSGVSGQNPTEEKTIISGQDVTEEAPEEITGKSIEREPLSRETEKVLFADDDPRIIKDEQYEPDIAPVQDDVDPQVLRRRLEELAEKNYLAGNKCFVFPEVVQADSVIDLYLNHSMSALASEPDILIKGAFNGWRWKKFTQKMHKSELTGDWWCCKLHIPKQAYRLDFVFFNGDTIYENNNHNDFVLQIESEINEHSFEDFLVEEKQRELERLAAEEAERKRQAEEERRKEEERAAMEADRAQAKAEVEMNKNKLQNLLNSASRYADNLWYIEPHTYKAGDRVKLFYNRSSRPLMHNTEIWMHGGYNNWSDGLSIAEKLIKSYEKDGDWWYADVTLPEGALVLDWVFADGPPGNARNYDNNGRQDFHAVVPNNISEDLFWVEEEHMIFKRLQKERKEREDADRRKSEITAKMKAGMKEKTMRDFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGKPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLRATVRVPLDAYMMDFVFSESEEGGIYDNRNGMDYHIPVTDSVAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVRHPGVFLLGCILFSVSMEFYGNAISGVLWNLKDTGKNKVQISNQLMFWVGCVYGRNDESRFGFFCHSALEFLRQNGSSPDIIHCHDWSSAPVAWLFKEQYAQNGLSNGRVVFTIHNLEFGAHHIGKAMARCDKATTVSYTYSREVSGHGAIAPHFSKFHGIRNGIDPDIWDPYSDNFIPVHYTSENVVEGKSAAKKALQQRLGLQQTDTPVVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSMFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAREQGLEPNGFSFEGADSNGVDYALDRAITTWYDARDWFHSLCKRVMEQDWTWNRPALDYMELYHSARKN", "cigar": "141M7D7M32D7M237D3M177D3M19D2M57D3M447D4M12D3MD5M38D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M14D11M178D3M2D3M70D12M3D4M6D3M21D6M224D15M141D13M50D24MD14M41D12M11DMDM8D3M45D20M40D23M39D18M12D4MD6M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D34M8D4M46D2M5D4M2D2M17D2M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 4536, "taxon_name": "Oryza nivara", "assembly": "AWHD00000000", "representative": { "id": "ONIVA04G24880", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 487, "end": 572, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 662, "end": 753, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 824, "end": 913, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 923, "end": 1118, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1180, "end": 1300, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 44, 183, 205, 716, 787, 878, 936, 997, 1018, 1052, 1109, 1152, 1213, 1257, 1295, 1336 ] }, { "node_id": 426002, "distance_to_parent": 0, "left_index": 1460, "right_index": 1461, "protein_stable_id": "ORUFI04G27570.1", "gene_stable_id": "ORUFI04G27570", "sequence": "MEMAHSPLCSRSRPVLVVRPATAATGFAQPIIRCRRFTRTRLLRCLVASADYSKRNPRRASTPKPKGAASRTYAPRPTVESSMKKIGQSGTDEGDLGTSNGKLSSEATEQTSNVEESSEVDFSGNVSSSVFLEGMDDAFEAETEEEVEQNQSPELSSESMDDDAIDRKLDEYRGKISALISSKPEPTSVSSTHVQDRSIVGFHEQEKSVVSFHEQDRSIVSVPEQSQPSSGVSGQNPTEEKTIISGQDVTEEAPEEITGKSIEREPLSRETEKVLFADDDPRIIKDEQYEPDIAPVQDDVDPQVLRRQLEELAEKNYLAGNKCFVFPEVVQADSVIDLYLNHSMSALASEPDILIKGAFNGWRWKKFTQKMHKSELTGDWWCCKLHIPKQAYRLDFVFFNGDTIYENNNHNDFVLQIESEINEHSFEDFLVEEKQRELERLAAEEAERKRQAEEERRKEEERAAMEADRAQAKAEVEMNKNKLQNLLNSASRYADNLWYIEPHTYKAGDRVKLFYNRSSRPLMHNTEIWMHGGYNNWSDGLSIAEKLIKSYEKDGDWWYADVTLPEGALVLDWVFADGPPGNARNYDNNGRQDFHAVVPNNISEDLFWVEEEHMIFKRLQKERKEREDADRRKSEITAKMKAEMKEKTMRDFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGKPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLRATEGGIYDNRNGMDYHIPVTDSVAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVKDLHYRQSFTWGNTEIKVWMFWVGCVYGRNDESRFGFFCHSALEFLRQNGSSPDIIHCHDWSSAPVAWLFKEQYAQNGLSNGRVVFTIHNLEFGAHHIGKAMARCDKATTVSYTYSREVSGHGAIAPHFSKFHGIRNGIDPDIWDPYSDNFIPVHYTSENVVEGKSAAKKALQQRLGLQQTDTPVVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSMFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAREQGLEPNGFSFEGADSNGVDYALDRAITTWYDARDWFHSLCKRVMEQDWTWNRPALDYMELYHSARKN", "cigar": "193DM237D3M177D3M19D2M57D3M447D4M12D3MD5M38D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M14D11M178D3M2D3M70D12M3D4M6D3M21D6M224D15M141D13M50D24MD14M41D12M11DMDM8D3M45D20M40D23M39D18M12D4MD6M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M352D6M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D2M29D3M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 4529, "taxon_name": "Oryza rufipogon", "assembly": "OR_W1943", "representative": { "id": "ORUFI04G27570", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 333, "end": 418, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 508, "end": 599, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 751, "end": 920, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 982, "end": 1102, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 29, 51, 562, 633, 724, 764, 800, 820, 854, 911, 954, 1015, 1059, 1097, 1138 ] } ], "representative": { "id": "ORUFI04G27570", "score": 0 } }, { "node_id": 4738448, "distance_to_parent": 0, "left_index": 1453, "right_index": 1458, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 50, "children": [ { "node_id": 425868, "distance_to_parent": 0.00091, "left_index": 1456, "right_index": 1457, "protein_stable_id": "BGIOSGA014316-PA", "gene_stable_id": "BGIOSGA014316", "gene_description": "Putative uncharacterized protein", "sequence": "MAHSPLCSRSRPVLVVRPATAATGFAQPIIRCRRFTRTRLLRCLVASADYSKRNPRRASTPKPKGAASRTYAPRPTVESSMKKIGQSGTDEGDLGTSNGKLSSEATEQTSNVEESSEVDFSGNVSSSVFLEGMDDAFEAETEEEVEQNQSPELSSESMDDDAIDRKLDEYRGKISALISSKPEPTSVSSTHVQDRSIVGFHEQEKSVVSFHEQDRSIVSVPEQSQPSSGVSGQNPTEEKTIISGQDVTEEAPEEITGKSIEREPLSRETEKVLFADDDPRIIKDEQYEPDIAPVQDDVDPQVLRRRLEELAEKNYLAGNKCFVFPEVVQADSVIDLYLNHSMSALAKSEINEHSFEDFLVEEKQRELERLAAEEAERKRQAEEERRKEEERAAMEADRAQAKAEVEMNKNKLQNLLNSASRYADNLWYIEPHTYKAGDRVKLFYNRSSRPLMHNTEIWMHGGYNNWSDGLSIAEKLIKSYEKDGDWWYADVTLPEGALVLDWVFADGPPGNARNYDNNGRQDFHAVVPNNISEDLFWVEEEHMIFKRLQKERKEREDADRRKSEITAKMKAEMKEKTMRDFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGKPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLRATVRVPLDAYMMDFVFSESEEGGIYDNRNGMDYHIPVTDSVAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVKDLHYRQSFTWGNTEIKVWFGKVEDVPVYFLEPQNGMFWVGCVYGRNDESRFGFFCHSALEFLRQNGSSPDIIHCHDWSSAPVAWLFKEQYAQNGLSNGRVVFTIHNLEFGAHHIGKAMARCDKATTVSYTYSREVSGHGAIAPHFSKFHGIRNGIDPDIWDPYSDNFIPVHYTSENVVEGKSAAKKALQQRLGLQQTDTPVVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFIVVPSMFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAREQGLEPNGFSFEGADSNGVDYALDRAITTWYDARDWFHSLCKRVMEQDWTWNRPALDYMELYHSARKN", "cigar": "193DM239DM177D3M19D2M57D3M447D4M12D3MD5M38D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M14D11M178D3M2D3M70D12M3D4M6D3M21D6M224D15M141D13M50D24MD14M41D12M11DMDM8D3M45D20M40D23M39D18M12D4MD6M5D2M13D5M16D2M7D3M9D4M61D26MD5MD2M87D12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 39946, "taxon_name": "Oryza sativa Indica Group", "assembly": "ASM465v1", "representative": { "id": "BGIOSGA014316", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 437, "end": 528, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 599, "end": 688, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 698, "end": 884, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 946, "end": 1066, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 27, 49, 347, 491, 562, 653, 711, 747, 784, 818, 875, 918, 979, 1023, 1061, 1102 ] }, { "node_id": 425663, "distance_to_parent": 0, "left_index": 1454, "right_index": 1455, "protein_stable_id": "OS04T0624600-01", "gene_stable_id": "OS04G0624600", "gene_description": " protein; Soluble starch synthase III-1", "sequence": "MEMAHSPLCSRSRPVLVVRPATAATGFAQPIIRCRRFTRTRLLRCLVASADYSKRNPRRASTPKPKGAASRTYAPRPTVESSMKKIGQSGTDEGDLGTSNGKLSSEATEQTSNVEESSEVDFSGNVSSSVFLEGMDDAFEAETEEEVEQNQSPELSSESMDDDAIDRKLDEYRGKISALISSKPEPTSVSSTHVQDRSIVGFHEQEKSVVSFHEQDRSIVSVPEQSQPSSGVSGQNPTEEKTIISGQDVTEEAPEEITGKSIEREPLSRETEKVLFADDDPRIIKDEQYEPDIAPVQDDVDPQVLRRRLEELAEKNYLAGNKCFVFPEVVQADSVIDLYLNHSMSALASEPDILIKGAFNGWRWKKFTQKMHKSELTGDWWCCKLHIPKQAYRLDFVFFNGDTIYENNNHNDFVLQIESEINEHSFEDFLVEEKQRELERLAAEEAERKRQAEEERRKEEERAAMEADRAQAKAEVEMNKNKLQNLLNSASRYADNLWYIEPHTYKAGDRVKLFYNRSSRPLMHNTEIWMHGGYNNWSDGLSIAEKLIKSYEKDGDWWYADVTLPEGALVLDWVFADGPPGNARNYDNNGRQDFHAVVPNNISEDLFWVEEEHMIFKRLQKERKEREDADRRKSEITAKMKAEMKEKTMRDFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGKPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLRATVRVPLDAYMMDFVFSESEEGGIYDNRNGMDYHSPVTDSVAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVKDLHYRQSFTWGNTEIKVWFGKVEDVPVYFLEPQNGMFWVGCVYGRNDESRFGFFCHSALEFLRQNGSSPDIIHCHDWSSAPVAWLFKEQYAQNGLSNGRVVFTIHNLEFGAHHIGKAMARCDKATTVSYTYSREVSGHGAIAPHFSKFHGIRNGIDPDIWDPYSDNFIPVHYTSENVVEGKSAAKKALQQRLGLQQTDTPVVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSMFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAREQGLEPNGFSFEGADSNGVDYALDRAITTWYDARDWFHSLCKRVMEQDWTWNRPALDYMELYHSARKN", "cigar": "193DM237D3M177D3M19D2M57D3M447D4M12D3MD5M38D3M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M14D11M178D3M2D3M70D12M3D4M6D3M21D6M224D15M141D13M50D24MD14M41D12M11DMDM8D3M45D20M40D23M39D18M12D4MD6M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 39947, "taxon_name": "Oryza sativa Japonica Group", "assembly": "IRGSP-1.0", "representative": { "id": "OS04G0624600", "score": -100 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 333, "end": 418, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 508, "end": 599, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 670, "end": 759, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 769, "end": 955, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1017, "end": 1137, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 29, 51, 562, 633, 724, 782, 818, 855, 889, 946, 989, 1050, 1094, 1132, 1173 ] } ], "representative": { "id": "OS04G0624600", "score": -100 } } ], "representative": { "id": "OS04G0624600", "score": -100 } } ], "representative": { "id": "OS04G0624600", "score": -100 } }, { "node_id": 4738416, "distance_to_parent": 0.004166, "left_index": 1437, "right_index": 1450, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 11, "children": [ { "node_id": 425818, "distance_to_parent": 0.00121, "left_index": 1448, "right_index": 1449, "protein_stable_id": "KN539225.1_FGP011", "gene_stable_id": "KN539225.1_FG011", "sequence": "MEMAHSPLCSRSRPVLVVRPTTAAAAAAVTGFTQAIIRCRRFTRTRLLRCLVASADYSKRNPRRASTPKPKGAASRTYAPRPTVESSMKKIGQSGTDEGDLGTSNGKLSSEATEQTSNVEESSEVDFSGNVSSSVFLEGMDDAFEAETEEEVEQNQSPELSSESMDDDAIDRKLDEYRGKISALISSKPEPTSVSSTHVQDRSIVGFHEQEKSVVSFHEQDRSIVSVPEQSQPSSGVSGQNPTEEKTIISEQDVTEEAPEEITGKSIEGEPLSRETEEVLFADDDPRIIKDEQYEPDIAPAQDDVDPQVLRRRLEELAEKNYLAGNKCFVFPEVVQADSVIDLYLNRSMSALASEPDILIKGAFNGWRWKKFTERMHKSELTGDWWCCKLHIPKQAYRLDFVFFNGDTIYENNNHNDFVLQIESEIDEHSFEDFLVEEKQRELERLAAEEAERKRQAEEERRKEEERAAMEADRAQAKAEVEMNKNKLQNILNSASRYADDLWYIEPHTYKAGDRVKLFYNRSSRPLMHNTEIWMHGGYNNWSDGLSIAERLVKSYEKDGDWWYADVTLPERALVLDWVFADGPPGNARNYDNNGRQDFHAVVPNNISEDLFWVEEEHMIFKRLQKERKEREDADRRKSEITAKMKAEMKEKTMRDFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGKPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLRATVRVPLDAYMMDFVFSESEEGGIYDNRNGMDYHIPVTDSVAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVKDLHYRQSFTWGNTEIKVWFGKVEDVPVYFLEPQNGMFWVGCVYGRNDESRFGFFCHSALEFLRQNGSSPDIIHCHDWSSAPVAWLFKEQYAQNGLSNGRVVFTIHNLEFGAHHIGKAMARCDKATTVSYTYSREVSGHGAIAPHYSKFHGIRNGIDPDIWDPYSDNFIPVHYTSENVVEGKSAAKKALQQRLGLQQTDTPIVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSMFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAREQGLEPNGFSFEGADSNGVDYALDRAITTWYDARDWFHSLCKRVMEQDWTWNRPALDYLELYHSARKN", "cigar": "193DM237D3M177D3M19D2M57D3M447D4M12D3MD8M33D5M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M14D11M178D3M2D3M70D12M3D4M6D3M21D6M224D15M141D13M50D24MD14M41D12M11DMDM8D3M45D20M40D23M39D18M12D4MD6M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 4528, "taxon_name": "Oryza longistaminata", "assembly": "O_longistaminata_v1.0", "representative": { "id": "KN539225.1_FG011", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 338, "end": 423, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 513, "end": 604, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 675, "end": 764, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 774, "end": 960, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1021, "end": 1142, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 34, 56, 567, 638, 729, 787, 823, 860, 894, 951, 994, 1055, 1099, 1137, 1178 ] }, { "node_id": 4738417, "distance_to_parent": 0.001511, "left_index": 1438, "right_index": 1447, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 13, "children": [ { "node_id": 425705, "distance_to_parent": 0.000935, "left_index": 1445, "right_index": 1446, "protein_stable_id": "OGLUM04G25800.1", "gene_stable_id": "OGLUM04G25800", "sequence": "MEMAHSRLCSRSRPVLVVRPTTAAAAAAVTGFAQPIIRCRRFTRTRLLRCLVASADYSKRNPRRASTPKPKGAASRTYAPRPTVESSMKKIGQSGTDEGDLGTSNGKLSSEATEQTSNVEESSEVDFSGNVSSSVFLEGMDDAFEAETEEEVEQNQSPELSSESMDDDAIDRKLDEYRGKISALISSKPEPTSVSSTHVQDRSIFGFHEQEKSVVSFHEQDRSIVSVPEQSQPSSGVSGQNPTEEKTIISGQDVTEEAPEEITGKSIGGEPLSRETEEVLFADDDPRIIKDEQYEPDIAPAQDDVDPQVLRRRLEELAEKNYLAGNKCFVFPEVVQADSVIDLYLNRSMSALASEPDILIKGAFNGWRWKKFTEKMHKSELTGDWWCCKLHIPKQAYRLDFVFFNGDTIYENNNHNDFVLQIESDIDEHSFEDFLVEEKQRELERLAAEEAERKRQAEEERRKEEERAAMEADRAQAKAEVEMNKNKLQNILNSASRYADNLWYIEPHTYKAGDRVKLFYNRSSRPLMHNTEIWMHGGYNNWSDGLSIAERLVKSYEKDGDWWYADVTLPERALVLDWVFADGPPGNARNYDNNGRQDFHAVVPNNISEDLFWVEEEHMIFKRLQKERKEREDADRRKSEITAKMKAEMKEKTMRDFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGKPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLRATVRVPLDAYMMDFVFSESEEGGIYDNRNGMDYHIPVTDSVAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVRHPGIFLFGGILFSVSVEFYGNTISEVLWNLKDTGKNKVKDLHYRQSFTWGNTEIKVWMFWVGCVYGRNDESRFGFFCHSALEFLRQNGSSPDIIHCHDWSSAPVAWLFKEQYAQNGLSNGRVVFTIHNLEFGAHHIGKAMARCDKATTVSYTYSREVSGHGAIAPHYSKFHGIRNGIDPDIWDPYSDNFIPVHYTSENVVEGKSAAKKALQQKLGLQQTDTPIVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSMFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAREQGLEPNGFSFEGADSNGVDYALDRAITTWYDARDWFHSLCKRVMEQDWTWNRPALDYLELYHSARKN", "cigar": "193DM237D3M177D3M19D2M57D3M447D4M12D3MD8M33D5M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M14D11M178D3M2D3M70D12M3D4M6D3M21D6M224D15M141D13M50D24MD14M41D12M11DMDM8D3M45D20M40D23M39D18M12D4MD6M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D49M2D4M3DM33D2M5D4M2D2M29D3M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 40148, "taxon_name": "Oryza glumipatula", "assembly": "ALNU02000000", "representative": { "id": "OGLUM04G25800", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 338, "end": 423, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 513, "end": 604, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 675, "end": 764, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 774, "end": 982, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1043, "end": 1164, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 34, 56, 567, 638, 729, 787, 848, 862, 882, 916, 973, 1016, 1077, 1121, 1159, 1200 ] }, { "node_id": 4738421, "distance_to_parent": 0.002737, "left_index": 1439, "right_index": 1444, "taxon_id": 40149, "taxon_name": "Oryza meridionalis", "node_type": "duplication", "bootstrap": 83, "duplication_confidence_score": 1, "children": [ { "node_id": 425714, "distance_to_parent": 0.005105, "left_index": 1442, "right_index": 1443, "protein_stable_id": "OMERI04G21490.1", "gene_stable_id": "OMERI04G21490", "gene_display_label": "OMERI04G21490", "sequence": "MEMAHSPLCSRSRPVLVARPATAAAAAAVTGFAQPIIRCRRFTRTRLLRCLVASADYSKRNPRRASTPKPKGAGSRTYAPRPTVESSMKKIGQSGTDEGDLGTSNGKLSSEATEQTSNVEESSEVDFSGNVSNSVFLEGMDDAFEAETEEEVEQNQSPELSSESMDDDAIDRKLDEYRGKISALISSKPEPTSVSSTHVQDRSIVGFHEQEKSVVSFHEQDRSIVSVPEQSQPSSGVSGQNPTEEKTIISGQDVTEEAPEEITGKSIEGEPLSRETEEVLFADDDPRIIKDEQYEPDIAPAQDDVDPQVLRRRLEELAEKNYLAGNKCFVFPEVVQADSVIDLYLNRSMSALASEPDVLIKGAFNGWRWKKFTEKMHKSELTGDWWCCKLHIPKQAYRLDFVFFNGDTIYENNNHNDFVLQIESEIDEHSFEDFLVEEKQRELERLAAEEAERKRQVEEECRKEEDRAAMEADRAQAKAEVEMNKNKLQNILNSASRYADNLWYIEPHTYKAGDRVKLFYNRSSRPLMHNTEIWMHGGYNNWSDGLSIAERLVKSYEKDGDWWYADVTLPERALVLDWVFADGPPGNARNYDNNGRQDFHAVVPNNISEDLFWVEEEHMIFKRLQKERKEREDADQRKSEITAKMKAEMKEKTMRDFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGKPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLRATVRVPLDAYMMDFVFSESEEGGIYDNRNGMDYHIPVTDSIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVKDLHYRQSFTWGNTEIKVWFGKVEDVPVYFLEPQNGMFWVGCVYGRNDESRFGFFCHSALEFLRQNGSSPDIIHCHDWSSAPVAWLFKEQYAQNGLSNGRVVFTIHNLEFGAHHIGKAMARCDKATTVSYTYSREVSGHGAIAPHYSKFHGIRNGIDPDIWDPYSDNFIPVY", "cigar": "193DM237D3M177D3M19D2M57D3M447D4M12D3MD8M33D5M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M14D11M178D3M2D3M70D12M3D4M6D3M21D6M224D15M141D13M50D24MD14M41D12M11DMDM8D3M45D20M40D23M39D18M12D4MD6M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21DM2928D", "taxon_id": 40149, "taxon_name": "Oryza meridionalis", "assembly": "Oryza_meridionalis_v1.3", "representative": { "id": "OMERI04G21490", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 338, "end": 423, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 513, "end": 604, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 675, "end": 764, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 774, "end": 960, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 34, 56, 567, 638, 729, 787, 823, 860, 894, 951 ] }, { "node_id": 425992, "distance_to_parent": 0, "left_index": 1440, "right_index": 1441, "protein_stable_id": "OMERI04G21470.1", "gene_stable_id": "OMERI04G21470", "gene_display_label": "OMERI04G21470", "sequence": "MEMAHSPLCSRSRPVLVARPATAAAAAAVTGFAQPIIRCRRFTRTRLLRCLVASADYSKRNPRRASTPKPKGAGSRTYAPRPTVESSMKKIGQSGTDEGDLGTSNGKLSSEATEQTSNVEESSEVDFSGNVSNSVFLEGMDDAFEAETEEEVEQNQSPELSSESMDDDAIDRKLDEYRGKISALISSKPEPTSVSSTHVQDRSIVGFHEQEKSVVSFHEQDRSIVSVPEQSQPSSGVSGQNPTEEKTIISGQDVTEEAPEEITGKSIEGEPLSRETEEVLFADDDPRIIKDEQYEPDIAPAQDDVDPQVLRRRLEELAEKNYLAGNKCFVFPEVVQADSVIDLYLNRSMSALASEPDVLIKGAFNGWRWKKFTEKMHKSELTGDWWCCKLHIPKQAYRLDFVFFNGDTIYENNNHNDFVLQIESEIDEHSFEDFLVEEKQRELERLAAEEAERKRQVEEECRKEEDRAAMEADRAQAKAEVEMNKNKLQNILNSASRYADNLWYIEPHTYKAGDRVKLFYNRSSRPLMHNTEIWMHGGYNNWSDGLSIAERLVKSYEKDGDWWYADVTLPERALVLDWVFADGPPGNARNYDNNGRQDFHAVVPNNISEDLFWVEEEHMIFKRLQKERKEREDADQRKSEITAKMKAEMKEKTMRDFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGKPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLRATVRVPLDAYMMDFVFSESEEGGIYDNRNGMDYHIPVTDSIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVKDLHYRQSFTWGNTEIKVWFGKVEDVPVYFLEPQNGMFWVGCVYGRNDESRFGFFCHSALEFLRQNGSSPDIIHCHDWSSAPVAWLFKEQYAQNGLSNGRVVFTIHNLEFGAHHIGKAMARCDKATTVSYTYSREVSGHGAIAPHYSKFHGIRNGIDPDIWDPYSDNFIPVHYTSENVVEGKSAAKKALQQKLGLQQTDTPIVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSMFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAREQGLDPNGFSFEGADSNGVDYALDRAITTWYDARDWFHSLCKRVMEQDWTWNRPALDYLELYHSARKN", "cigar": "193DM237D3M177D3M19D2M57D3M447D4M12D3MD8M33D5M9D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M28D13M14D11M178D3M2D3M70D12M3D4M6D3M21D6M224D15M141D13M50D24MD14M41D12M11DMDM8D3M45D20M40D23M39D18M12D4MD6M5D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D6M21D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 40149, "taxon_name": "Oryza meridionalis", "assembly": "Oryza_meridionalis_v1.3", "representative": { "id": "OMERI04G21470", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 338, "end": 423, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 513, "end": 604, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 675, "end": 764, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 774, "end": 960, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1021, "end": 1142, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 34, 56, 567, 638, 729, 787, 823, 860, 894, 951, 994, 1055, 1099, 1137, 1178 ] } ], "representative": { "id": "OMERI04G21470", "score": 0 } } ], "representative": { "id": "OGLUM04G25800", "score": 0.000935 } } ], "representative": { "id": "KN539225.1_FG011", "score": 0.00121 } } ], "representative": { "id": "OS04G0624600", "score": -99.994759 } } ], "representative": { "id": "OS04G0624600", "score": -99.986866 } } ], "representative": { "id": "OS04G0624600", "score": -99.974547 } } ], "representative": { "id": "OS04G0624600", "score": -99.969849 } } ], "representative": { "id": "OS04G0624600", "score": -99.94036799999999 } } ], "representative": { "id": "OS04G0624600", "score": -99.923958 } } ], "representative": { "id": "OS04G0624600", "score": -99.872629 } }, { "node_id": 4738486, "distance_to_parent": 0.094196, "left_index": 1420, "right_index": 1429, "taxon_id": 214687, "taxon_name": "Musa acuminata subsp. malaccensis", "node_type": "duplication", "bootstrap": 99, "duplication_confidence_score": 1, "children": [ { "node_id": 425866, "distance_to_parent": 0.081703, "left_index": 1427, "right_index": 1428, "protein_stable_id": "GSMUA_Achr5P00700_001", "gene_stable_id": "GSMUA_Achr5G00700_001", "gene_description": "Soluble starch synthase 3, chloroplastic/amyloplastic", "sequence": "MALQPQRPVCCPGTVSENSHLRIRSVLGLFSQSSLRFQEVTRISATPRMLAGSGYSKRQPRRSLIPMTKASNPRGFAPKPQAGTSIRKKDQNKVDEKEVSGSSSSSKHTISSSGLTDRRVAAGEKETKVAVSESNLGIIDVDEPPEDQNGIAYTTTAIQESLVKLKADMDARAHKQLLENLADQNFSRGNKVFVVPQIVNPDQVIKVFLNRSSSALANEADVLIKGAYNGWRWKFFTEKLQKADIKGDWWSCQIYVPKEAYRVDYVFFNGANTYENNNSEDFFLLVEGGMDEVAFEDFLLEEEHKKLKKLAAEQAEKERQAKEQRRKEAEKVASEADRAQAKVEVEKKKRGFNHVMKLASNSAHHIWHIEPSLFKGGDRVRLYYNRSCRPLSHAAEIWIHGGFNNWDEGLSIIEKLSHSEKRDGDWWFADVAVPGRALVLDWVFADGPPGKAIVYDNNNLQDFHATVPKSIPVEVSWVEEENQIYRKFQEDRRSKEEAIRKKTEKTVRMKAETKERTMKLFLLSQKHIVYSEPIVVRAGRMVTVFYNPYHTVLNGKPEVWFKCSFNRWNHRKGPLPPQKMVPAENGSHLKATVKVPMDAYMMDFVFSERENGGIYDNRNRMDYHIPVTGGIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHTVVVVLPKYDCMNLSNVKDLHHRNSFAWGETEISVWFGKVEGLPVYFLEPKNGMFSVGCIYGRSDDGHRFGFFCHAALEFLLQSGFRPDILHCHDWSSAPVAWLFKEHYIYYGLSNARVIFTIHNLEFGVHNIGRAMTYADKATTVSQTYSREVAGNPAISPHLHKFHGIVNGIDPDIWDPYNDQFIPVPYTPENVVEGKKAAKEALQQKLGLKTSDHPLVGIITRLTVQKGIHLIKHAVWRTLEHNGQVVLLGSAPDSRIQNDFANLASELHSSHGDRVRFCLTYNEPLSHLIYAGADFILVPSLFEPCGLTQLIAMRYGSIPVVRRTGGLYDTVFDVDTERERAQAQGLEPNGFSFDGADSADVDDVLNRHSNICLVRQTGMVSLAVQARDGARLVVESTGFGLYGTLPFGTEQNIMMVWGEKSGTLFLKSLYSTVDHSLFPLVLYS", "cigar": "432D2M94DMDM79D5M18D2M52D8M175DM268D7MDM10D2M57D2M54D7M30D7M24D3M10D3MDM34DM47D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M27D14M14D8M2DM7D5M164D5M2D3M74D5M4D6M30D3M78D4M656D10MD8MD3M15D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D15M22D3M3DM15D2M21DM30D5M10D12M6D10M8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM16D7M151DM352D", "taxon_id": 214687, "taxon_name": "Musa acuminata subsp. malaccensis", "assembly": "MA1", "representative": { "id": "GSMUA_Achr5G00700_001", "score": -100 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 202, "end": 287, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 377, "end": 468, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 539, "end": 628, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 638, "end": 828, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 885, "end": 1010, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 32, 54, 122, 431, 502, 593, 651, 687, 724, 759, 816, 859, 920, 964, 1002, 1044 ] }, { "node_id": 4738492, "distance_to_parent": 0, "left_index": 1421, "right_index": 1426, "taxon_id": 214687, "taxon_name": "Musa acuminata subsp. malaccensis", "node_type": "gene_split", "duplication_confidence_score": 1, "children": [ { "node_id": 425823, "distance_to_parent": 0, "left_index": 1424, "right_index": 1425, "protein_stable_id": "GSMUA_Achr11P18560_001", "gene_stable_id": "GSMUA_Achr11G18560_001", "gene_description": "Soluble starch synthase 3, chloroplastic/amyloplastic", "sequence": "MFRVSQTYSREVAGNPAISSHLHKFHGIVNGIDPDIWDPYDDHFIPVPYTPENVVAGKKAAKEALQQRLGLRRSDHPLVGIITRLTVQKGIHLIKHAVGQTLERNGQVVLLGSAPDSRIQNDFAHLADQLHSSHAGRVRFCLTYDEPLSHLIYAGADFILVPSLFEPCGLTQLIAMRYGSIPVVRRTGGLYDTVFDIDNDKERARAQGLEPNGFSFEGADPSGVDYALNRHVS", "cigar": "4758D3M355D11M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M2205D", "taxon_id": 214687, "taxon_name": "Musa acuminata subsp. malaccensis", "assembly": "MA1", "representative": { "id": "GSMUA_Achr11G18560_001", "score": -100 }, "domains": [ { "id": "IPR001296", "root": 1296, "start": 73, "end": 194, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 3, 46, 107, 151, 189 ] }, { "node_id": 425878, "distance_to_parent": 0, "left_index": 1422, "right_index": 1423, "protein_stable_id": "GSMUA_Achr11P18570_001", "gene_stable_id": "GSMUA_Achr11G18570_001", "gene_description": "Soluble starch synthase 3, chloroplastic/amyloplastic", "sequence": "MSLQPQRPICCPRAVPEHTRFRIRPVHGLFSHSTLGFREVTRIGTTPCMLASSGQWFLCHLKSRTSLSMCNLHVFELHSAGRRPRRTLTPGTKASTRKGFAPRPQVGTSTQKKDQNDAQEEEVSGSSGSKQPAISSSGTTDRKVTGDAQSAEIVPTSRMSSNLVKRRIDILEEAEQQGQGNDETDQQIFTDMPSDSTDFAETDGQIADVGIEGDGLGLRYKNIAVDHSNKGIGKETMIDQFTEAGIGKEITTERFSKVGVGKDTVTDQFNDVGIRKETMTDEFSDAGIGEETMADQFSEVGKQMIYVKNQIGRITIAEMTEIAGEEEKKLAVVESSLDISDVEELAEAHDSTENAVLDMEESLLKQKADMEAKAQRQLLENLADENFSEGIKVFVVPQVVNPDQVIEIFFNRSLSALANEPDVLIKGAYNGWRWQFFTEKLQKTDLKGDWWSCRLSVPKEAYKVDFVFFNGADAYENNNSKDFSLPVEGGMDETAFEDLLLEEKHREIEKLAAEQAEKERQAEEHRQKAAEKAASEADKAQAKIEAEKRRHHLHHLMKLASESASHIWQIEPNFFEGGDRVRLYYNRSSRPLAHATEIWIHGGHNIWSEGLSIIEKLSHSEKRDGDWWSADVVVPDRALVLDWVFADGPPGKAVVYDNNNRQDFHATVPKSMPGELFWVEEEHRIYRKLQEERRAREEAVHKKAEKTARMKAETKEKTMKMFLLSQKHIVYTEPIDVRAGSVITVLYNPSNTVLNGKPEVWFRCSFNRWSHHNGPLPPQKMVPAENASHLKATVKVPMDAYMMDFVFSEREDGGIYDNRNGMDYHIPVIGGIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHTVDVVLPKYNCMNLSNVKDLHFRNSFAWDGMEINVWFGQVEGLPVYFLEPQNGMFSVGCIYGRNDDGHRFGFFCHAALEFLLQSGFQPDILHCHDWSSAPVAWLFKEHYAHYGLSNARVIFTIHNLEFGVHNIGRAMAYADKATT", "cigar": "432D2M94DMDM79D5M18D2M57D7M170D2M268D7MDM10D3M111D8M30D7M24D3M10D3MDM34DM6DM13D23M4D5M156D3M2DM8D2M54D5M8D3MDM30D2M26D7M4DM51D9M27D12M16D11M7D5M164D5M2D5M70D17M30D6M77D12MD2M11D25M26DM24D2M26D11M15D6M118DM22D13M25D6M18D37M37DM5D13M11DMD25M21D7M131D28M13D2M13D5M16D2M7D3M9D4M61D26MD5MD8M5D12M11D8MD43MD12M2D13MD6M38D17MD8M38D4M7D4MD18M8D2MD11MD4MD7M66D4MD19M4D4M12D3M38D3M10D45MD9M3D11M6D8M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM11D8M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D5M3016D", "taxon_id": 214687, "taxon_name": "Musa acuminata subsp. malaccensis", "assembly": "MA1", "representative": { "id": "GSMUA_Achr11G18570_001", "score": -100 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 403, "end": 488, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 578, "end": 669, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 740, "end": 829, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 839, "end": 1001, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 32, 632, 703, 794, 852, 888, 925, 960 ] } ], "representative": { "id": "GSMUA_Achr11G18560_001", "score": -100 } } ], "representative": { "id": "GSMUA_Achr11G18560_001", "score": -100 } } ], "representative": { "id": "GSMUA_Achr11G18560_001", "score": -99.905804 } } ], "representative": { "id": "AT1G11720", "score": -174.66321699999997 } } ], "representative": { "id": "AT1G11720", "score": -174.42128199999996 } }, { "node_id": 4738596, "distance_to_parent": 0.041452, "left_index": 1403, "right_index": 1416, "taxon_id": 3041, "taxon_name": "Chlorophyta", "node_type": "duplication", "bootstrap": 1, "duplication_confidence_score": 1, "children": [ { "node_id": 4738600, "distance_to_parent": 0.074415, "left_index": 1410, "right_index": 1415, "taxon_id": 3041, "taxon_name": "Chlorophyta", "node_type": "speciation", "bootstrap": 37, "children": [ { "node_id": 425837, "distance_to_parent": 0.304431, "left_index": 1413, "right_index": 1414, "protein_stable_id": "ABO99224", "gene_stable_id": "OSTLU_41853", "gene_description": "predicted protein", "sequence": 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"432D2M96DM102D2M57D3M446D7M57D2M395D3M2DM8D2M54D7M10DM30D2M8DM80D9M241D6M2D5M356D6M656D32MD8M5D12M11D8MDMD41M11D17MD6M41D14MD8M38D4M12D16M18D6MD4MD8M64D5MD19M4D4M8D7M38D3M10D21M3D21M2D6M8D8M6D3MD4M15D7M4D2M8D25M65D3M8D44MD19M314D9MD7M7DM10D9M17D14M6D2MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M5DM33D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D5M4DM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D3M2D15MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218D2M339DM255DM11DM183D2M965D", "taxon_id": 436017, "taxon_name": "Ostreococcus lucimarinus CCE9901", "assembly": "ASM9206v1", "representative": { "id": "OSTLU_41853", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 78, "end": 163, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 229, "end": 323, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 393, "end": 484, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 494, "end": 683, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 745, "end": 864, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ] }, { "node_id": 425908, "distance_to_parent": 0.238183, "left_index": 1411, "right_index": 1412, "protein_stable_id": "EDP01585", "gene_stable_id": "CHLREDRAFT_191662", "gene_description": "Soluble starch synthase III", "sequence": "MASSMGRALQPGMSGAQRSVRKGANRIRGAQGPRTVPLLGLKALRKEDAELLKEAESYMSPEEHAELRRLLEENQRLRQQITAPQAASASRSSAASSTGRFEAAAGGSGYGYGRDYAKDMASLSVELDATIDDEEEEAPPRQVPEASTRTQPYAAAASRFEALLSERRPAGATMYFNRNQSEKLRNRPHIVMQYGFNHWELQPEAGNSLDLFPAPTPKSDVTDFWTCRMQVPEETYELNFILHDKAGAYENNNGMDFTYPVEAGIDYDTWVDTAAERIVAKELARRLKNNLGSLQEGGTAALLRNGVPVYKVTPALPVAGGKAVVQYNRRGGSFHAFPIPEGESVKLLYGFNGWQESGKAAMTRVPVPAKPAAGAEDEEWWEVEVDIPNIAVAMNFVFNYYEHYDNNGKADYKAKVGLPAGTTLEAWAAGLGEQYRVMELAKRRAERAEKEERQRRADEKKKLAQDLVKAVERRKVRHVLYTVPEVVEAGEEVTIYYNPRDTPLNGRQQLYLMGGWNRWTHKRSFGPVAMHPPEAGGEHWQVGGLGDVVTALGRAVKDQGHIVEVILPRYEFFLHSPVLQGQLKYETEFDWGGTRIYVTTAVVENLRVFFIEPKNGFFATPTVYGRYDDEVRFDFFCKAALEFLLKTGRQPDILHCHDWSTAHVAQSYWSDYHPYGLHKPRVIFTIHNLNYGQKKIGEAAHACQKFTTVSPTYAYEVGGAPIIAPHGHKFMGIRNGIDPELWSPEENIFLPVKYSSEDVVEGKKAARAALRQRLNLTGWNDKFIVAVVSRLTGQKGVPLIKHAAYRAIERGGQFVLLGSAPDPKVQADFNALAQSMGGQDAAFCFKYDEPLSHLIYAAADMIVVPSMFEPCGLTQMIAMRYGTVPIVRHTGGLRDTVFDVDFDKERAAWELYGSSDWQRDGIDATNGFAFTGTDGGALDYAMNRAIDAWYNDRAWFHSLQRRIMEQDWSWNRPAIDYIELYFSALKA", "cigar": "432D4M92D3M79D5M18D3M55D5MD2M170D2M268D7MDM14D6M37D3M9D3M24D4M24D8M61D4M8D4MDM34DM6DM13D4M23D6M155D3M2DM8D2M54D2M11D3M60D7M4DM51D9M42D7M6D11M7D5M259D4M30D6M503DM30DM11DMDM197D8M19D2M13D5M16D2M7D3M9D4M61D7M15D4MD14M5D15M3D13MD3MD39MD12M18D4M38D17MD7M55D7M8D3M8D2MD11MD4MD9M62D26M4D10M6D3M38D3M10D19M5D45MDM3D9M15D6M6DM8D16M8DM65D3M8D44MD6M395D7M134D4M15DM6DM80D9M21D8M20DM2DM45D12M6D4M4DM33D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D5M4DM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D3M2D21M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M3DM15D2M21DM30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 3055, "taxon_name": "Chlamydomonas reinhardtii", "assembly": "v3.1", "representative": { "id": "CHLREDRAFT_191662", "score": -100 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 171, "end": 262, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 321, "end": 417, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 541, "end": 717, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 781, "end": 897, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 23, 54, 79, 113, 142, 173, 185, 230, 286, 376, 404, 465, 541, 626, 716, 931 ] } ], "representative": { "id": "CHLREDRAFT_191662", "score": -99.761817 } }, { "node_id": 4738598, "distance_to_parent": 0.015385, "left_index": 1404, "right_index": 1409, "taxon_id": 3041, "taxon_name": "Chlorophyta", "node_type": "speciation", "bootstrap": 2, "children": [ { "node_id": 425946, "distance_to_parent": 0.459802, "left_index": 1407, "right_index": 1408, "protein_stable_id": "ABP00035", "gene_stable_id": "OSTLU_40458", "gene_description": "predicted protein", "sequence": "MEKSTGADDTFIATVDVPATAAVMDFVFSDGGAIYDNADRADFHAPVRNASQKLEIARMSSVLQRFQEITTARHAKEKADKIKKDKRDKAKAEAKAKAQAVTLKQQEHVLFTEPGQLEAGKIMKLFYNPNNTSLKGSERVFIVGSWNRWSHEKTFKLPMTEVLVKGEKRMEVELNIPTDAYMMDFVFSNGNHEGAHYDNRNNMDYHIPVIGGKDEKGVAVVEKPLHVVSVSVEMAPIAKVGGLGDVVTSLGLAVQAEGHKVEVVLPKYDVLKYDLIEDLKEEEGFQWGGCYNHVFSGTVEGVKTYFIDPDNGMFKVGMIYGTDYLEIPLTDAERFGYFSRAALEWMLQSGRQPDIIHCHDWQTAPVAKVYWEDYHNYGLGNPRVVFTIHNLDFGQSLIREAMDYSQIGTTVSRSYAQEISGHDSISHQLQKFHGVVNGIDPDIWDPANDKCLPVSYEIDTVAEGKAACRAALCSRSNISNKSDVPLIGVVTRLTHQKGIHLIKHAIFKALERGCQVVLLGSAPDPNVQREFEDMANALKQNHFNDAALHLYFDEPLSHLIYAGSDMILVPSMFEPCGLSQLIAMRYGTVPVVRRTGGLADTVFDYDHDHAKAEWEGMTPNGFQFDGTEAHDIDYALNRAIDLFYNDIEKFHALQANCMSCDFSWNRPALDYIELYHAARK", "cigar": "193DM237D3M151DM561DM210DM34DM2178DM10D22M4D19M3D7M3D13M3D9M15D6M18D22M65D3M8D57MD6M315D8MD7M7DM10D9M17D22MDM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D3M39D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D11M14D18M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D3M39D4M30D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM815D", "taxon_id": 436017, "taxon_name": "Ostreococcus lucimarinus CCE9901", "assembly": "ASM9206v1", "representative": { "id": "OSTLU_40458", "score": 0 }, "domains": [ { "id": "IPR005085", "root": 5085, "start": 5, "end": 47, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR005085", "root": 5085, "start": 120, "end": 210, "name": "CBM25", "description": "Carbohydrate binding module family 25" }, { "id": "IPR013534", "root": 13534, "start": 226, "end": 422, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 481, "end": 639, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ] }, { "node_id": 426016, "distance_to_parent": 0.352979, "left_index": 1405, "right_index": 1406, "protein_stable_id": "EDP08815", "gene_stable_id": "CHLREDRAFT_205618", "gene_description": "Soluble starch synthase, starch synthase III", "sequence": "LIEEEEKRLWRQVESRALDAAAAARVEFRKRRDAELLAAARQGGQGGGLPHAGSGIRVHMGYDNWWNKISQTIDLSPLSPEDAAAKGLPSGQGAQWWGCWVDVPYSAAVLNFVFSDREQVGGRADADKEVEDRAALRAVRKVEAKGLTMRKRREVVHEFLYTVPLSPKAGQVVDVYYRPEATMLRGRPEIWLRASWNRGSANTGAGGAAQLRPVTARLLPCLPGGLGFYKATVQVEDLVQEGSFTWGGTAVRVWRGGVEGLDTVFLEPENGMFWVGCIYGKNNDAQRFAFFCGAALQYLKNQAAPGGRGAADIIHCHDWQSAPVAYGDRGGAKTVFTIHNLSYGADLIGRAMQACQVATTVSPTYAREIAGHPSVAAHLNKLYGVLNGIDQDIWDPSEDPCLPLHFSADNVAAGKEAARRALRQKLGLVAADVPIVGCVTRLVAQKGIHLSKHAAWRTLERGGQFVLLGSAPDGRVQGEFNALREQLSRAYPDRAALVFTYDEPLSHLIYAGSDMFLVPSMFEPCGLTQMIAMRYGTIPVVRKTGGLVDTVYDVDHDEDRARLKGMDTNGFSFEGTDFAGMDYALNRALSVWYSDKALWHSLRKRAMTQDWSWNSPALDYVELYYKALKS", "cigar": "3228D11M60D4MD8M38D4M7D4MD11M33DMD7M66D24M4D11MD7M38D3M10D21M49DM3D9M15D6M15D25M65D3M8D44M406D3M75D6M27D2M4DM23D4M3D2M6DM6DM80D9M21DM136D7M2D4M3DM33D2M5D4M2D7M3D11M9D4M3D7M20D16M30D2MDM17D4M23D3M5D8M2D11M15D9M3D7M3DM80D4M61D8M6D16M14D8M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D2M25D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM12D7MD5M7D4M8DM7DM20D4M13D4M15DM28D2M11D2M22D4M2DM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM195D2M149DM287DM527D", "taxon_id": 3055, "taxon_name": "Chlamydomonas reinhardtii", "assembly": "v3.1", "representative": { "id": "CHLREDRAFT_205618", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 237, "end": 373, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 432, "end": 553, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 42, 71, 123, 145, 171, 234, 287, 368, 391, 414, 446, 477, 529, 565, 609 ] } ], "representative": { "id": "CHLREDRAFT_205618", "score": -99.647021 } } ], "representative": { "id": "CHLREDRAFT_191662", "score": -99.68740199999999 } } ], "representative": { "id": "AT1G11720", "score": -174.09035899999995 } } ], "representative": { "id": "AT1G11720", "score": -174.04873099999995 } }, { "node_id": 4737817, "distance_to_parent": 0.070673, "left_index": 955, "right_index": 1400, "taxon_id": 33090, "taxon_name": "Viridiplantae", "node_type": "duplication", "bootstrap": 3, "duplication_confidence_score": 0.1628, "children": [ { "node_id": 4737859, "distance_to_parent": 0.262865, "left_index": 998, "right_index": 1399, "taxon_id": 3193, "taxon_name": "Embryophyta", "node_type": "duplication", "bootstrap": 47, "duplication_confidence_score": 0.75, "children": [ { "node_id": 4737861, "distance_to_parent": 0.428298, "left_index": 1249, "right_index": 1398, "taxon_id": 3193, "taxon_name": "Embryophyta", "node_type": "speciation", "bootstrap": 92, "children": [ { "node_id": 425906, "distance_to_parent": 0.473385, "left_index": 1396, "right_index": 1397, "protein_stable_id": "PP1S34_269V6.1", "gene_stable_id": "PP1S34_269V6", "gene_description": "Predicted protein", "sequence": "MSVMQHMAAANNKWHAAALALPAAPRGFGRRHRVSCCIQPPVGDRGIGEDRLTEISIATDGDGIFGVDMKQLIDDAQQSKCMADGELKSCQIATIFHLLHNTLFTRSQKFSYIRALIIVCNNVEDRLEADKRELSRFSLKNSRVHDLHHKVSQLTCRNIPGVKGMPFKMPGILHLNTGRTTAFEKLQKVERERDLLAARVAQLKAEHEASMAECDLLRQKAKQFEMSFHVSGRQGKSAGSMKRFKMNRKRFNPPSIWSEILLRIDAMTLTGVLQIEQATSLRKLVWARDAQIADMFFKLADGNDAELSARLLSIISSTRRRSLHIVHICTEMAPVAQPGTASFNISNLCKALRRNGHLVEVILPKYDCMDLSAVDNLREIETDLYIYFGDQWHKNRIWIGTLYGIAVTLLEPFHPGNFFAREEFYNYNDDFERFTYFCKLSLEYLLKLGKQADILHLHNWQTAAVAPMFWEHYAHQGLQDIRLVLTCHDFRYQCLRDPHKLAICGLDPEQLNRPDRLQDDLEPRFINMLKGGIVYSNIVTTVSPIYAADVLTKEHGYDLHVTLNTHKDKFIGIYNGLDDVLWDPALDCALPETYSVEDMAGKSVCKASLRQELGLPMVDDSVPLVGCILFENSEVELKLIRAALECAVGEEAQFVCAVHNNPGLGIRLTGKQIHTDANARLLGVNDDALLHRIVAASDILYSPDMYEPASQSVMIGMRYGAVPVARQVHSITSSIINLDEQQHIILHATGFPFYSTEDSDAITSLHDALTYWKCHPEMWSTLVRNCMSKDLSWDSSCVEAYEAAYWSVHKV", "cigar": "192D2M237D5M92D2M616D4M5D14M105D6M35D2M24D7M255D2M84DM30D2M8D2M27D2M50D2M3D4M55D8M10D5M163D5M82D5M39D5M546DM226D2M13D6M6DM2D8M7D3M10D65M20D10M165D15MDM45D4M159D4M141D9M12D13M13D22M65D3M42D7M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM5D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D12M15D3M15D13M6D16MD5M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D4M23D7M4D3M5D6M9D4M120D11M12D4M26DM2DM8D9M10DM30D5M2DM17D4M3DMD2MDMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9DM4D3M13D5M7D4M8DM7DM19D5M14D3M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "assembly": "ASM242v1", "representative": { "id": "PP1S34_269V6", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 324, "end": 564, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 43, 54, 168, 235, 320, 365, 400, 433, 476, 493, 530, 567, 624, 653, 675, 713, 734, 772 ] }, { "node_id": 4737862, "distance_to_parent": 0.365032, "left_index": 1250, "right_index": 1395, "taxon_id": 3398, "taxon_name": "Magnoliophyta", "node_type": "speciation", "bootstrap": 9, "children": [ { "node_id": 4737967, "distance_to_parent": 0.239975, "left_index": 1329, "right_index": 1394, "taxon_id": 4479, "taxon_name": "Poaceae", "node_type": "speciation", "bootstrap": 93, "children": [ { "node_id": 4737968, "distance_to_parent": 0.071196, "left_index": 1380, "right_index": 1393, "taxon_id": 147369, "taxon_name": "Panicoideae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 4737972, "distance_to_parent": 0.054337, "left_index": 1387, "right_index": 1392, "taxon_id": 147429, "taxon_name": "Andropogoneae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425947, "distance_to_parent": 0.046234, "left_index": 1390, "right_index": 1391, "protein_stable_id": "Zm00001d051976_P002", "gene_stable_id": "Zm00001d051976", "gene_description": "", "sequence": "METPRLVVGAASRAPPPAPRSQRRRILRPCGGAHCSPSARAAPPVLLTRCSSYSSSREGNGDSHDILYINKQRLIAMEEMKKLHDENNLLLEEIQGLETEMQGAVSVANIFRLRNYMDDNVKFLNLQQSYADCIPLEAAQSSSFSELLLRIDTMVISGMISMTEASDLREKLVTNRSIIQSTFCDIHHKPNTELLSELQLFLRKPIDTSSGVGLVIIEPSQLSYFSRDMLRGYPDDFERFSYFSRASLDYIVKSGKRPDIIHIHNWETAIVAPLFWEIFAHQGLGNTRILLTCQDLNSECLEEPNKLEMCGLDPRKLHRPDRLQDTNKTHLVNILKGGIVYSNKVVLMSSTHSKDALIQGSRHELQSTLAAHREKILVASYGLDGELWDPFKDIYLPRRYSANDIEGKSICRQALRRRLRFNGDSSIIVGCICDDNSDVHSLKEAVHVALHRNTQVCGSVVNSILQALKGEIKGDKIAFVEAYDEALAHLIYAGSDIILCSSFQDPSLQIAVCETSLLFSCFFQ", "cigar": 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85, 105, 143, 217, 262, 297, 329, 372, 389, 426, 463, 518, 545, 568, 606, 627, 659 ] } ], "representative": { "id": "SORBI_004G338100", "score": 0.031162 } }, { "node_id": 4737970, "distance_to_parent": 0.049844, "left_index": 1381, "right_index": 1386, "taxon_id": 4555, "taxon_name": "Setaria italica", "node_type": "duplication", "bootstrap": 100, "duplication_confidence_score": 1, "children": [ { "node_id": 425883, "distance_to_parent": 0.014961, "left_index": 1384, "right_index": 1385, "protein_stable_id": "Si006020m", "gene_stable_id": "Si006020m.g", "gene_description": "Uncharacterized protein", "sequence": 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"2989DM16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D4M56D9M65D3M48DM338D8MD7M7D22M8D22M8DM3D68M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM6D3M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D12M15D3M15D13M6D16MD5M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D2M25D7M4D3M5D6M9D2M122D11M12D4M26DM2DM8D2M17DM30D2M4D2M4D11M2D8MD2MDMD2M6D7M16D9M3D9M11D6M17D10M33D4M14D8M15D3M13D5M7D4M8DM7DM19D10M8D4M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 4555, "taxon_name": "Setaria italica", "assembly": "JGIv2.0", "representative": { "id": "Si006020m.g", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 181, "end": 417, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 10, 48, 150, 220, 255, 287, 330, 347, 384, 421, 476, 503, 526, 568, 589, 621 ] }, { "node_id": 425944, "distance_to_parent": 0.002469, "left_index": 1382, "right_index": 1383, "protein_stable_id": "Si016436m", "gene_stable_id": "Si016436m.g", "gene_description": "Uncharacterized protein", "sequence": "METTRLVVGAAMRAPPPPPPAPQFRRRRRLPHPRGGAHCPLFARAARPTLLTRCSYSRKGNGNPRGTPRRESSSTVRLDVEESSDQGTDLASEQRKGDIMELFSQAQRNILSLNKQRLLAMEELKKLQDENKSLLQEIEVLETEVQGVPLEAVQSSTFCELLLRIDTMVVSGMISMQEASDLREKVVNNRSIIQSTFSEIHHKANTELLSELRLFLRKPIEYATSYLCPNCNSYCLSFKVSAILYSCIWSSNLFNLNLRKSLHVVHICSELDPISSCGSLSTYVAGVSCAVQGKGNLVEVILPKYTSINMDGIHGLRKAEAEYESYFGGIWHKNRIWTGTSSGVGLILIEPVQLSYFNRDMLRGYPDDFERFSYFSRASLDYIVKSGKQPDILHIHNWETAIVAPLFWDIFAHQGLENTRILLTCQDLNSQCLEEPNKVEMCGLDPRKLHRADRLQDPNKTHLVNILKGGIVYSNKVVLMSSIHSRDVLIQGSRHGLEATLTAHKEKILVASHGLDGELWYPSKDIYLPRRYSANDIEGKSICREALKRRLGFSSGSSIIVGCICDGYSDIHNLKEAVHVALRKNAQVIFMEKLGSVVNSTVRALKEEFINLDDDIAFVEEYNETLAHLIYAGSDIILCSSFEDPSLQIAVKAIKYGCAPVQINFPNDGSRQSEGRDCRNRVMSKYIISTYGEFSLLQALDSFKNDPSSWDQQIKDGMAKGLAWDAECYDLHWEAYSSLRKL", "cigar": "432D4M258D3M449D4M5D3M4D11M23D12M12D2M50D8MD3M31D2M24D2M99D2M159D2M84DM30D2M8D2M27D2M50D9M55D2M16D5M163D4M85D3M39D5M546DM226DM14D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D4M56D9M65D3M48DM338D8MD7M7D22M8D22M8DM3D39M15D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM6D3M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D12M15D3M15D13M6D16MD5M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D2M25D7M4D3M5D6M9D2M122D11M12D4M26DM2DM8D2M17DM30D2M4D2M4D11M2D2M2D4MD2MDMD2M6D7M16D9M3D9M11D6M17D10M33D4M14D8M15D3M13D5M7D4M8DM7DM19D10M8D4M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 4555, "taxon_name": "Setaria italica", "assembly": "JGIv2.0", "representative": { "id": "Si016436m.g", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 263, "end": 502, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 58, 77, 86, 109, 147, 249, 259, 304, 339, 371, 414, 431, 468, 505, 560, 587, 608, 650, 671, 703 ] } ], "representative": { "id": "Si016436m.g", "score": 0.002469 } } ], "representative": { "id": "Si016436m.g", "score": 0.052313 } }, { "node_id": 4737975, "distance_to_parent": 0.058345, "left_index": 1330, "right_index": 1379, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 76, "children": [ { "node_id": 425727, "distance_to_parent": 0.04388, "left_index": 1377, "right_index": 1378, "protein_stable_id": "OB02G43300.1", "gene_stable_id": "OB02G43300", "gene_description": "Uncharacterized protein", "sequence": "MEAPAIVVGAALGIRPPPRPLRRSSRVVVDRLASCCSRYSLAVAAPLRRPALAPARSYHTCRCLSSWLVWAFDPLIGAYVAREGRGDGRSKPHREGSNSVRLSVKANNDQETYLTDEQRKEIDIWELFSEAQRNILYLNKQRLVAMEELKKLQDENESLLQDIEVLETEMKGISTETAESSIFCELLLRIDTMAVSGMVGMAEASDLRKKVFDNRYMISSIFCDTHHMQDTELLSELRLFLRKPVEKPLHVVHICSEMDPIASCGSLATYVTGLSSALKRKGNLVEVILPKYAGINEDGIHCLRKAEADYESYFGGHWHKNRIWTGISSGVSLTLIEPVKLSYFDRDMIRGYPDDFERFSYFARASLDYIVKSGKQPDVLHVHNWETSIVGPLFWDLFAHQGLGNTRIVLTCQDLNSQCLEDPNKLELCGLDPQILHRPDRLQDNSKTSLVNVLKGGIVYSNKVLLMSSTHPRAVVIQGLGHGLEATLTTHKDKVLVASQWLDGEHWDPSKDIYLPHRYSANHIEGKSFCRKALKRRLGFHIDSSIVVGCVYDGYSNIDDLREAVHVALDGGAQVVLMECKGPAMSSTVQALKELKGDRVMFIETYDEALEHLIFAGSDIFMCSSFHDPSLQIAIRAIKYGSAPVQINFPSNGSRQTEWHDNPSTALSQYIISTYGGMSLPQALDDINKTPSQWDWRIKNGMSKVLSWDAECYDLHWEAYSAVRKL", "cigar": "432D4M258D3M449D4M5D4M3D5M4D2M23D13M7D6M50D8MD5M24D7M24D16MDM82D2M160D2M84DM30D2M8D2M27D2M50D9M55D2M16D5M163D4M85D3M39D5M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D4M56D9M65D3M48DM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM6D3M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D12M15D3M15D13M6D16MD5M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D2M25D7M4D3M5D6M9D2M122D11M12D4M26DM2DM8D2M17DM30D2M4D2M4D11M3D2M4DMD2MDMD2M6D7M16D9M3D9M11D6M17D10M33D4M14D8M15D3M13D5M7D4M8DM7DM19D10M8D4M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 4533, "taxon_name": "Oryza brachyantha", "assembly": "Oryza_brachyantha.v1.4b", "representative": { "id": "OB02G43300", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 250, "end": 489, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 101, 110, 134, 172, 246, 291, 326, 358, 401, 418, 455, 492, 547, 574, 596, 634, 655, 687, 727 ] }, { "node_id": 4737981, "distance_to_parent": 0.023589, "left_index": 1331, "right_index": 1376, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 1, "children": [ { "node_id": 425926, "distance_to_parent": 0.015448, "left_index": 1374, "right_index": 1375, "protein_stable_id": "OPUNC02G33770.1", "gene_stable_id": "OPUNC02G33770", "sequence": "MEAPGLVVGAALRVPPPPPPPPPALRRCTRGAADRLLVFSREPRLAPLTRCYCSREGKGNARSKPHREGSNSVREWLMFVSLSRLNVKANNDQRIMHLELMSQETYLADEQHEGVDIWELFSEAQRNILHLNKQRLVAMEELKKLQDENKSLLQDIEVLETERQGFSIEIAESSRFCELLLRIDTMTISGMVGMIEASDLRKKVIDNRYMIHSVFSDIHHKQDTELLSELRSFLHKPAEKPLHVVHICSEMDPITSRGSLATYVTGLSSALQRKGNLVEVILPKYAGINEDGIHCLRKAEAYYESYYGGRWHKNRIWTGISSGVSLTLIEPVQLSYFDRDMLRGYPDDFERFSYFSRASLDYIVKSGKQPDVLHVYNWETAIVGPLFWDIFAHQGLGNTQILLTCQDLTSQCLEDPNMLELCGLDPHKLHRPDRLQDNSKTNLVNVLKGGIVYSNKVLLMSSTLPRDMAIQGLGHGLEATLTTHKEKVLVASHGLDGELWDPSKDIYLPQRYSPNDIEGKSFCRKALKRRLGLHSGSSIVAGCICNGDSNTDGLREAVRVALHGGAQVIFMENKGPVMNSTVQALKEELKGDRVMFVEIYDEALEHLIFAGSDIFLCSSFYDPSLQIAMRAIKYGSAPVHINFPSNGSRQTEWHEYRSTALSQYIVSTYGDMSLSQALDGIKNNPSQWDWRIKDAMSKVLSWDAECYDLHWETYSAIRKLIIVMVVFEAQCGPSIILHPTHSLSLCQAGQRPAPGGRNPFLRCRRRRRRRRSDPPLPPLDMVSTRSPPFVPSPGSCPPRPPQAVPTPPPTPSGLSNQACRDDPLRVEKIPLRDDRFPSLDDQLWECDGPDPYTAVFREKLLHDNPM", "cigar": "432D4M258D3M449D4M5D5MD7M2D3M23D9M16DM50D6M3D5M29D2M24D2M98D2M160D2M84DM30D2M8D2M27D2M50D9M55D11M6D6M163D6M23DM12D3M40D7M39D5M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D4M56D9M65D3M48DM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM6D3M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D12M15D3M15D13M6D16MD5M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D2M25D7M4D3M5D6M9D2M122D11M12D4M26DM2DM8D2M17DM30D2M4D2M4D11M2D3M4DMD2MDMD2M6D7M16D9M3D9M11D6M17D10M33D4M14D8M15D3M13D5M7D4M8DM7DM19D10M8D4M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM582DM11D2M107D5M5D4M19D33M7D4M149DM287D24M10D7M23D14M95D9M8D5M21D4M15D4M52D3MD6MD3M3D2M7D2M5D9M4D9M182D", "taxon_id": 4537, "taxon_name": "Oryza punctata", "assembly": "AVCL00000000", "representative": { "id": "OPUNC02G33770", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 243, "end": 482, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 55, 74, 93, 127, 165, 239, 284, 319, 351, 394, 411, 448, 485, 540, 567, 590, 628, 649, 681, 720, 725, 814 ] }, { "node_id": 4737985, "distance_to_parent": 0.008483, "left_index": 1332, "right_index": 1373, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "duplication", "bootstrap": 0, "duplication_confidence_score": 0.1111, "children": [ { "node_id": 425997, "distance_to_parent": 0.044686, "left_index": 1371, "right_index": 1372, "protein_stable_id": "BGIOSGA009244-PA", "gene_stable_id": "BGIOSGA009244", "gene_description": "Putative uncharacterized protein", "sequence": "MEAPGLVVGSALRAAQPPPPPPLPRSPRGAADRLLIFSREPRPRLAPLTWCYCSREGKGNARSKAHREGSNSVRLNVKANNDQETYLADERHEGVDIWELFSEAQRNILHLNKQRLVAMEELKKLQDENKSLLQDIEVLETERQGFSIEIAESSSFSELLLRIDTMTISGMVGMTEASDLRKKVIDNRYMIHSVFSDIHHKQDTELLSELRLFLRKPAEKPLHVVHICSEMDPITSRGSLATYVTGLSSALQRKGNLVEVILPKYAISL", "cigar": "432D4M258D3M449D4M5D5MD6M4D2M23D9M16DM50D8MD5M29D2M24D2M98D2M160D2M84DM30D2M8D2M27D2M50D9M55D2M16D5M163D4M85D3M39D5M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D4M56D9M65D3M48DM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D9M125D3M3391D", "taxon_id": 39946, "taxon_name": "Oryza sativa Indica Group", "assembly": "ASM465v1", "representative": { "id": "BGIOSGA009244", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 223, "end": 265, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 55, 74, 83, 107, 145, 219 ] }, { "node_id": 4737991, "distance_to_parent": 0, "left_index": 1333, "right_index": 1370, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4738024, "distance_to_parent": 0, "left_index": 1364, "right_index": 1369, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 1, 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319, 351, 394, 411, 448, 485, 540, 567, 605, 626, 658 ] }, { "node_id": 425961, "distance_to_parent": 0.000842, "left_index": 1365, "right_index": 1366, "protein_stable_id": "OMERI02G34570.1", "gene_stable_id": "OMERI02G34570", "gene_display_label": "OMERI02G34570", "sequence": "MTRIMNLELMSQETYLADERHEGVDIWELFSEAQRNILHLNKQRLVAMEELKKLQDENKSLLQDIEVLETERQGFSIEIAESSRFSELLLRIDTMTISGMVGMTEASDLRKKVIDNRYMIHSVFSDIHHKQDTELLSELRLFLRKPAEKPLHVVHICSEMDPITSRGSLATYVTGLSSALQRKGNLVEVILPKYAGINEDVIHFLRKAEADYESYYGGCWHKNRIWTGISSGVSLTLIEPVQLSYFDRDMLRGYPDDFERFSYFSRASLDYIVKSGKQPDVLHVHNWETAIVGPLFWDIFAHQGLGNTRILLTCQDLTSQCLEVPNMLELCGLDPHKLHRPDRLQDNSETNLVNVLKGGIVYSNKVLLMSSTLPRDMAIQGLGHGLEATLTTHKEKVLVASHGLDGELWDPSKDIYLPQRYSPNDIEGKSFCRKTLKRRVGLHSGSSVVVGCICNGDSNTDGLREAVRVALHGGAQGDRVMFVEIYDEALEHLIFAGSDIFLCSSFYDPSLQIAIRAIKYGSAPVQINFPSNGSRQTEWHDYPSTALSQYIISTYGDMSLSQALDGIKNNPSQWDWRIKDAMSKVLSWDAECYDLHWEAYSIIRKL", "cigar": 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"OMERI02G34570", "score": 0.000842 } }, { "node_id": 4737996, "distance_to_parent": 0, "left_index": 1334, "right_index": 1363, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "dubious", "bootstrap": 0, "duplication_confidence_score": 0, "children": [ { "node_id": 4738002, "distance_to_parent": 0.007875, "left_index": 1341, "right_index": 1362, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "duplication", "bootstrap": 0, "duplication_confidence_score": 0.2, "children": [ { "node_id": 4738003, "distance_to_parent": 0.004253, "left_index": 1356, "right_index": 1361, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 87, "children": [ { "node_id": 425776, "distance_to_parent": 0.003281, "left_index": 1359, "right_index": 1360, "protein_stable_id": "BGIOSGA009245-PA", "gene_stable_id": "BGIOSGA009245", "gene_description": "Putative uncharacterized protein", "sequence": "MEAPGLVVGAALRAPPPPPPLPRSTRGAADRLLVFSREPRPRLAPLTRCYCSREGKGNARSKPHREGSNSVREWLIFVSLSRLNVKANNDQKSVICSDGFNFTDILHLNKQRLVAMEELKKLQDENKSLLQDIEVLETERQGFSIEIAESSRFSELLLRIDTMTISGMVGMTEASDLRKKVIDNRYMIHSVFSDIHHKQDTELLSELRLFLRKPAEKPLHVVHICSEMDPITSRGSLATYVTGLSSALQRKGNLVEVILPKYAGINEDVIHCLRKAEADYESYYGGRWHKNRIWTGISSGVSLTLIEPVQLSYFDRDMLRGYPDDFERFSYFSRASLDYIVKSRKQPDVLHVHNWETAIVGPLFWDIFAHQGLGNTRILLTCQDLTLQCLEVPNMLELCGLDPHKLHRPDRLQDNSETNLVNVLKGGIVYSNKVLLMSSTLPRDMAIQGLGHGLEATLTTHKEKVLVASHGLDGELWDPSKDIYLPQRYSPNDIEGKSFCRKALKRRLGLHSGSSVVFGCICNGDSNTDGLREAVRVALHGGAQVIFMENKGPVMNSTVQALKEELKGDRVMFVEIYDEALEHLIFAGSDIFLCSSFYDPSLQIAMRAIKYGSAPVQINFPSNGSRQTEWHDYPSTALSQYIISTYGDVSLSQALDGIKNSPSQWDWRIKDAMSKVLSWDAECYDLHWEAYSVIRKL", "cigar": 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261, 296, 328, 371, 388, 425, 462, 517, 544, 567, 605, 626, 658 ] }, { "node_id": 425860, "distance_to_parent": 0.001288, "left_index": 1357, "right_index": 1358, "protein_stable_id": "KN540450.1_FGP002", "gene_stable_id": "KN540450.1_FG002", "sequence": "EWLIFVSLSRLNVKANNDQETYLADEQHEGVDIWELFSEAQRNILHLNKQRLVAMEELKKLQDENKSLLQDIEVLETERQGFSIEIAESSRFSELLLRIDTMTISGMVGMTEASDLRKKIIDNRYMIHSVFSDIHHKQDTELLSELRLFLRKPAEKPLHVVHICSEMDPITSRGSLATYVTGLSSALQRKGNLVEVILPKYAGINEDVIHCLRKAEADYESYYGGCWHKNRIWTGISSGVSLTLIEPVQLSYFDRDMLRGYPDDFERFSYFSRASLDYIVKSRKQPDVLHVHNWETAIVGPLFWDIFAHQGLGNTRILLTCQDLTSQCLEVPNMLELCGLDPHKLHRPDRLQDNSETNLVNVLKGGIVYSNKVLLMSSTLPRDMAIQGLGHGLEATLTTHKEKVLVASHGLDGELWDPSKDIYLPQRYSPNDIEGKSFCRKALKRRLGLHSGSSVVFGCICNGDSNTDGLREAVRVALHGGAQGDSVMFVEIYDEALEHLIFAGSDIFLCSSFYDPSLQIAMRAIKYGSAPVQINFPSNGSRQTEWHDYPSTALSQYIISTYGDMSLSQALDGIKSNPSQWDWRIKDAMSKVLSWDAECYDLHWEAYSVIRKL", "cigar": "1878D8M6D6M163D4M85D3M39D5M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D4M56D9M65D3M48DM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM6D3M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D12M15D3M15D13M6D16MD5M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D2M25D7M4D3M5D6M9D2M122D11M12D4M26DM95D2MDMD2M6D7M16D9M3D9M11D6M17D10M33D4M14D8M15D3M13D5M7D4M8DM7DM19D10M8D4M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 4528, "taxon_name": "Oryza longistaminata", "assembly": "O_longistaminata_v1.0", "representative": { "id": "KN540450.1_FG002", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 159, "end": 398, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 19, 43, 81, 155, 200, 235, 267, 310, 327, 364, 401, 456, 483, 521, 542, 574 ] } ], "representative": { "id": "KN540450.1_FG002", "score": 0.001288 } }, { "node_id": 4738009, "distance_to_parent": 0.001681, "left_index": 1342, "right_index": 1355, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 425909, "distance_to_parent": 0.034267, "left_index": 1353, "right_index": 1354, "protein_stable_id": "KN543060.1_FGP001", "gene_stable_id": "KN543060.1_FG001", "sequence": "MCLRMMQADSDEMFVSVHVAEASRLGSNLYVCFCTSCQLLAPYLHTYTIKTYIIVIYSEESGGFTQRREDGKIEARIAIQRRQREGKGNARSKPHREGSNSVRFRLNMKANNDQKNVICFDGLNFTDILHLNKQRLVAMEELKKLQDENKSLLQDIEVLETERQGFSIEIAESSRFSELLLRIDTMTISGMVGMTEASDLRKKIIDNRYMIHSVFSDIHHKQDTELLSELRLFLRKPAEKPLHVVHICSEMDPITSRGSLATYVTGLSSALQRKGNLVEVILPKYAGINEDVIHCLRKAEADYESYYGGCWHKNRIWTGISSGVSLTLIEPVQLSYFDRDMLRGYPDDFERFSYFSRASLDYIVKSGKQPDVLHVHNWETAIVGPLFWDIFAHQGLGNTRILLTCQDLTSQCLEVPNMLELCGLDPHKLHRPDRLQDNSETNLVNVLKGGIVYSNKVLLMSSTLPRDMAIQGLGHGLEATLTTHKEKVLVASHGLDGELWDPSKDIYLPQRYSPNDIEGKSFCRKALKRRLGLHSGSSVVVGCICNSDSNTDGLREAVRVALHGGAQGDRVMFVEIYDEALEHLIFAGSDIFLCSSFYDPLLQIALANVHFAMASKNLEKVSIT", "cigar": "104D2M86D2M237D5M258D3M449D4M5D5M42D6M12D2M50D8MD5M27D4M24D16MDM82D6M140D3M3D12M84DM30D2M8D2M27D2M50D9M55D4M14D5M163D4M85D3M39D5M546DM226D2M13D3M125D10M165D15MDM45D4M159D4M141D4M56D9M65D3M48DM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM6D3M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D12M15D3M15D13M6D16MD5M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D2M25D7M4D3M5D6M9D2M122D11M12D4M26DM95D2MDMD2M6D7M16D9M3D9M11D6M17D10M33DM69D3M8DM7DM19D5M2268D", "taxon_id": 4528, "taxon_name": "Oryza longistaminata", "assembly": "O_longistaminata_v1.0", "representative": { "id": "KN543060.1_FG001", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 243, "end": 482, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 1, 40, 60, 84, 103, 114, 165, 239, 284, 319, 351, 394, 411, 448, 485, 540, 567, 605 ] }, { "node_id": 4738014, "distance_to_parent": 0, "left_index": 1343, "right_index": 1352, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 426061, "distance_to_parent": 0.109667, "left_index": 1350, "right_index": 1351, "protein_stable_id": "OS02T0807100-01", "gene_stable_id": "OS02G0807100", "gene_description": "Putative uncharacterized protein", "sequence": "MEAPGLVVGSALRAAQPPPPPPLPRSPRGAADRLLIFSREPRPRLAPLTRCYCSREGKGNARSKPHREGSNSVRLNVKANNDQETYLADERHEGVDIWELFSQAQRNILHLNKQRLVAMEELKKLQDENKSLLQDIEVLETERQGFSIEIAESSRFSELLLRIDTMTISGMVGMTEASDLRKKVIDNRYMIHSVFSDIHHKQDTELLSELRLFLRKPAEKPLHVVHICSEMDPITSRGSLATYVTGLSSALQRKGNLVEVILPKYAGINEDVIHFLRKAEADYESYYGGCWHKNRIWTGAVYQVVLVLHS", "cigar": 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"OBART02G36610.2", "gene_stable_id": "OBART02G36610", "sequence": "MEAPGLVVGAALRAPPPPPPLRCSPRGAADRLLVFSREPRPRLAPLTRCYCSREGKGNARSKPHREGSNSVREWLIFVSLSRLNVKANNDQRIMNLELMSQETYLADERHEGVDIWELFSEAQRNILHLNKQRLVAMEELKKLQDENKSLLQDIEVLETERQGFSIEIAESSRFSELLLRIDTMTISGMVGMTEASDLRKKVIDNRYMIHSVFSDIHHKQDTELLSELQLYLRKPAEKPLHVVHICSEMDPITSRGSLATYVTGLSSALQRKGNLVEVILPKYAGINEDVIHCLRKAEADYESYYGGCWHKNRIWTGISSGVSLTLIEPVQLSYFDRDMLRGYPDDFERFSYFSRASLDYIVKSGKQPDVLHVHNWETAIVGPLFWDIFAHQGLGNTRILLTCQDLTSQCLEVPNMLELCGLDPHKLHRPDRLQDNSETNLVNVLKGGIVYSNKVLLMSSTLPRDMAIQGLGHGLEATLTTHKEKVLVASHGLDGELWDPSKDIYLPQRYSPNDIEGKSFCRKALKRHLGLHSGSSVVVGCICNGDSNTDGLREAVRVALHGGAQGDSVMFVEIYDEALEHLIFAGSDIFLCSSFYDPLLQIAMRAIKYGSAPVQINFPSNGSRQTEWHDYPSTALSQYIISTYGDMSLSQALDGIKNNPSQWDWRIKDAMSKVLSWDAECYDLHWEAYSVIRKL", "cigar": 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317, 349, 392, 409, 446, 483, 538, 565, 603, 624, 656 ] }, { "node_id": 426050, "distance_to_parent": 0, "left_index": 1345, "right_index": 1346, "protein_stable_id": "ORGLA02G0318500.1", "gene_stable_id": "ORGLA02G0318500", "gene_description": "Uncharacterized protein", "sequence": "MEAPGLVVGAALRAPPPPPPLRCSPRGAADRLLVFSREPRPRLAPLTRCYCSREGKGNARSKPHREGSNSVREWLIFVSLSRLNVKANNDQRIMNLELMSQETYLADERHEGVDIWELFSEAQRNILHLNKQRLVAMEELKKLQDENKSLLQDIEVLETERQGFSIEIAESSRFSELLLRIDTMTISGMVGMTEASDLRKKVIDNRYMIHSVFSDIHHKQDTELLSELQLYLRKPAEKPLHVVHICSEMDPITSRGSLATYVTGLSSALQRKGNLVEVILPKYAGINEDVIHCLRKAEADYESYYGGCWHKNRIWTGISSGVSLTLIEPVQLSYFDRDMLRGYPDDFERFSYFSRASLDYIVKSGKQPDVLHVHNWETAIVGPLFWDIFAHQGLGNTRILLTCQDLTSQCLEVPNMLELCGLDPHKLHRPDRLQDNSETNLVNVLKGGIVYSNKVLLMSSTLPRDMAIQGLGHGLEATLTTHKEKVLVASHGLDGELWDPSKDIYLPQRYSPNDIEGKSFCRKALKRHLGLHSGSSVVVGCICNGDSNTDGLREAVRVALHGGAQVIFMENKGPVMNSTVQALKEELKGDSVMFVEIYDEALEHLIFAGSDIFLCSSFYDPLLQIAMRAIKYGSAPVQINFPSNGSRQTEWHDYPSTALSQYIISTYGDMSLSQALDGIKNNPSQWDWRIKDAMSKVLSWDAECYDLHWEAYSVIRKL", "cigar": "432D4M258D3M449D4M5D4M3D5M4D2M23D9M16DM50D8MD5M29D2M24D2M98D2M160D2M84DM30D2M8D2M27D2M50D9M55D11M6D6M163D6M23DM12D3M40D7M39D5M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D4M56D9M65D3M48DM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM6D3M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D12M15D3M15D13M6D16MD5M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D2M25D7M4D3M5D6M9D2M122D11M12D4M26DM2DM8D2M17DM30D2M4D2M4D11M2D3M4DMD2MDMD2M6D7M16D9M3D9M11D6M17D10M33D4M14D8M15D3M13D5M7D4M8DM7DM19D10M8D4M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 4538, "taxon_name": "Oryza glaberrima", "assembly": "AGI1.1", "representative": { "id": "ORGLA02G0318500", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 241, "end": 480, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 53, 72, 91, 125, 163, 237, 282, 317, 349, 392, 409, 446, 483, 538, 565, 588, 626, 647, 679 ] } ], "representative": { "id": "OBART02G36610", "score": 0 } } ], "representative": { "id": "OBART02G36610", "score": 0.00708 } } ], "representative": { "id": "OBART02G36610", "score": 0.00708 } } ], "representative": { "id": "KN540450.1_FG002", "score": 0.005541 } }, { "node_id": 4738022, "distance_to_parent": 0.001694, "left_index": 1335, "right_index": 1340, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 94, "children": [ { "node_id": 425680, "distance_to_parent": 0.001796, "left_index": 1338, "right_index": 1339, "protein_stable_id": "ONIVA02G39070.3", "gene_stable_id": "ONIVA02G39070", "sequence": "MEAPGLVVGAALRAPPPPPPLRCSPRGAADRLLVFSREPRPRLAPLTRCYCSREGKGNARSKPHREGSNSVREWLIFVSLSRLNVKANNDQRIMNLELMSQETYLADERHEGVDIWELFSEAQRNILHLNKQRLVAMEELKKLQDENKSLLQDIEVLETERQGFSIEIAESSRFSELLLRIDTMTISGMVGMTEASDLRKKVIDNRYMIHSVFSDIHHKQDTELLSELRLFLRKPAEKPLHVVHICSEMDPITSRGSLATYVTGLSSALQRKGNLVEVILPKYAGINEDVIHFLRKAEADYESYYGGCWHKNRIWTGISSGVSLTLIEPVQLSYFDRDMLRGYPDDFERFSYFSRASLDYIVKSGKQPDVLHVHNWETAIVGPLFWDIFAHQGLGNTRILLTCQDLTSQCLEVPNMLELCGLDPHKLHRPDRLQDNSETNLVNVLKGGIVYSNKVLLMPSTLPRDMAIQGLGHGLEATLTTHKEKVLVASHGLDGELWDPSKDIYLPQRYSPNDIEGKSFCRKTLKRRVGLHSGSSVVVGCICNGDSNTDGLREAVRVALHGGAQVIFMENKGPVMNSTVQALKEELKGDRVMFVEIYDEALEHLIFAGSDIFLCSSFYGPSLQIAIRAIKYGSAPVQINFPSNGSRQTEWHDYPSTALSQYIISTYGDMSLSQALDGIKNNPSQWDWRIKDAMSKVLSWDAECYDLHWEAYSVIRKL", "cigar": 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72, 91, 125, 163, 237, 282, 317, 349, 392, 409, 446, 483, 538, 565, 588, 626, 647, 679 ] }, { "node_id": 425824, "distance_to_parent": 0, "left_index": 1336, "right_index": 1337, "protein_stable_id": "ORUFI02G38160.4", "gene_stable_id": "ORUFI02G38160", "sequence": "MEAPGLVVGSALRAAQPPPPPPLPRSPRGAADRLLIFSREPRPRLAPLTRCYCSREGKGNARSKPHREGSNSVREWLIFVSLSRLNVKANNDQRIMNLELMSQETYLADERHEGVDIWELFSEAQRNILHLNKQRLVAMEELKKLQDENKSLLQDIEVLETERQGFSIEIAESSRFSELLLRIDTMTISGMVGMTEASDLRKKVIDNRYMIHSVFSDIHHKQDTELLSELRLFLRKPAEKPLHVVHICSEMDPITSRGSLATYVTGLSSALQRKGNLVEVILPKYAGINEDVIHFLRKAEADYESYYGGCWHKNRIWTGISSGVSLTLIEPVQLSYFDRDMLRGYPDDFERFSYFSRASLDYIVKSGKQPDVLHVHNWETAIVGPLFWDIFAHQGLGNTRILLTCQDLTSQCLEVPNMLELCGLDPHKLHRPDRLQDNSETNLVNVLKGGIVYSNKVLLMSSTLPRDMAIQGLGHGLEATLTTHKEKVLVASHGLDGELWDPSKDIYLPQRYSPNDIEGKSFCRKTLKRRVGLHSGSSVVVGCICNGDSNTDGLREAVRVALHGGAQVIFMENKGPVMNSTVQALKEELKGDRVMFVEIYDEALEHLIFAGSDIFLCSSFYDPSLQIAIRAIKYGSAPVQINFPSNGSRQTEWHDYPSTALSQYIISTYGDMSLSQALDGIKNNPSQWDWRIKDAMSKVLSWDAECYDLHWEAYSDAFVDDAVATAAKNTVGGKAVGGLLELFLGENLEPTRSAAGATIGTHLLLEKHATVLLKESLLRSDELPLLKPQVEPEQHEQ", "cigar": "432D4M258D3M449D4M5D5MD6M4D2M23D9M16DM50D8MD5M29D2M24D2M98D2M160D2M84DM30D2M8D2M27D2M50D9M55D11M6D6M163D6M23DM12D3M40D7M39D5M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D4M56D9M65D3M48DM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM6D3M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D12M15D3M15D13M6D16MD5M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D2M25D7M4D3M5D6M9D2M122D11M12D4M26DM2DM8D2M17DM30D2M4D2M4D11M2D3M4DMD2MDMD2M6D7M16D9M3D9M11D6M17D10M33D4M14D8M15D3M13D5M7D4M8DM7DM19D10M8D4M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13D2M272D54M255DM11D2M107D4M747D2M52D3MD6MD2M33D7M184D", "taxon_id": 4529, "taxon_name": "Oryza rufipogon", "assembly": "OR_W1943", "representative": { "id": "ORUFI02G38160", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 243, "end": 482, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], 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protein", "sequence": "MEALATVAHPASSTRFFPNTDTVKRPLKSPAVCCSRNSEDANNFLPGSSHTKSKGNGIDAVQTSMVSPDIELGVNHNDIWLLFNEAQQNILYLNKQRLMAMEKLNKIQKEKELLLSRIKQLESEKMSGTLDGTTTVPKEKTKPKGDKPVIFGELLLRIDSMVLSGAISHGEASDLRSMVMEDKAMLADAFHDLHKNDGELLVCLRRFYDQSRRTGLHIVQICTELEPVASVGSLATYVTGLSRALQRKGNTVEVILPKYAILNLEQVHGFRKAEAEFHSYFSGQWHPNRIWTGIVHGIAVTFIEPIHLAAFFSREGIYGYSDDLERFTYFSRAALDYIVKSKKKPDIFHIHGWQTSVIGPLFWDFFVNQGLETTRLLLTCHGFDSQCVERPEKLALCGLDPPQLHRSDRLQDNSGNHLVNLLKGGVVYSNKVAIVSSLHSKDAVIESMSYGLETTLAIHREKVLVIPYGFDDTKWDPSKDNFLPVNYSSEDPKGKATCRTALRQRLRFVDQTSAAMVGCIYTEVSEIDVENLKAVVCLALGKGAQFIFLGSSTTPEVEAALESLRKELKDQNVRFINKYNEALSHLVIAGSDILLCASFHDPKLHLPLKAIKYGTIPVAVNPNESRLVRHAEGQEFGSTKSSRILSMFANVSLSQALDDMKYDGIGWSKKIKDAMSEDLSWDSECCDMYMDAYMSMKNL", "cigar": "432D2M260D2M452D2M5D15M47D2M59D2MD5M29D2M24D3M259D2M84DM30D2M8D2M27D2M50DM4D4M55D4M14D5M163D4M83D5M39D5M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D8M58D3M65D3M8D3M22D4M3D9M338D8MD7M7D22M8D3MD18M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM5D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D12M15D3M15D13M6D16MD5M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D3M24D7M4D3M5D6M9D4M120D11M12D4M26DM2DM8D2M17DM30D5M7D11M2D4M5D2MDMD2M6D7M16D9M3D9M11D6M17D10M33D4M14D9M14D3M13D5M7D4M8DM7DM19DMD8M8D4M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 13333, "taxon_name": "Amborella trichopoda", "assembly": "AMTR1.0", "representative": { "id": "AMTR_s00033p00039610", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 217, "end": 456, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 36, 52, 62, 89, 132, 213, 258, 293, 326, 369, 386, 423, 460, 516, 545, 569, 607, 629, 660 ] }, { "node_id": 4737868, "distance_to_parent": 0.079551, "left_index": 1252, "right_index": 1325, "taxon_id": 1437201, "taxon_name": "Pentapetalae", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4737874, "distance_to_parent": 0.034294, "left_index": 1311, "right_index": 1324, "taxon_id": 1437201, "taxon_name": "Pentapetalae", "node_type": "speciation", "bootstrap": 1, "children": [ { "node_id": 425657, "distance_to_parent": 0.271666, "left_index": 1322, "right_index": 1323, "protein_stable_id": "KMS97620", "gene_stable_id": "BVRB_5g125350", "gene_description": "hypothetical protein isoform A", "sequence": "MAILASCLYHLPHFLPKTSRRRSIGALPIRSRLEAHDNMEFSQTSSSQSELQSSDVWQLFTEAQQNILYLNKQRMVAVEELNKAKEEIQTLHQRIENLEAGKHEYTGGDKSSILWEVLLRIDSMVLTGLIDGGDASDLRRLVMDSKVSFPDDVVPLLQKRDAELLAELRRLSRQSKRSGFHVVHVCTEMEPVVSVGSLGSYVTGISRALQRKGNLVEVILPKYKSLDLTMVQGLQEIQSEFYSYFNGQLHGNKIWTGVVYGIGVTFLEPLYYSSLFNREMVYGYSDEFERFTYFSRASLDYLVKVGKHPDVIHIHNWETAIIGPLFWDIFINQGLSATRILLTCQDFASQCLEQPEKLALCGLDPSRLNRPDRLQDHSKAHLVNILKGGIIYSNKVIFLSSINSKGRILWSPGHGLEPTLSSHKDKLVVAPYGFDQTMWDPSRDELLPENFSVSDMKGKGICKSSLQQHVGLSEDASSILVGCIVSEISDVDLESLLGFLRLADLRGIQFLFMGVSRLPSIDNALQSLSEELEVKYPCCCFNELSLT", "cigar": 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"left_index": 1253, "right_index": 1310, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "duplication", "bootstrap": 0, "duplication_confidence_score": 0.0833, "children": [ { "node_id": 4737890, "distance_to_parent": 0.01496, "left_index": 1272, "right_index": 1309, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4737892, "distance_to_parent": 0.007271, "left_index": 1279, "right_index": 1308, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 426012, "distance_to_parent": 0.173209, "left_index": 1306, "right_index": 1307, "protein_stable_id": "VIT_07s0205g00090.t01", "gene_stable_id": "VIT_07s0205g00090", "gene_description": "Putative uncharacterized protein", "sequence": "METLINAAIPWAFGFPKFNTSNKHRVKPRTVRCLRKNDEVNRLFEAPSQMENGFHIVHICTEMVPVVSVGSLASYVTGLSHALQRQGNLVEVILPKYASLDLDEVQGLREIEAEFYSYFNGQLQGNRIWTGVVYGIGVTFIQPVHYSTFFTRERLYGYPDDFERFSYFSRASLDYIVKSGKQPDVLHIHNWETAIVGPLFWDVFVKQVQLRIKFICSMY", "cigar": "432D2M260D3M450D3M5D13M1949D7M163D8MD7MDM45D4M159D3M807D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM5D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD2M283DM25DM14D4MD5M2867D", "taxon_id": 29760, "taxon_name": "Vitis vinifera", "assembly": "IGGP_12x", "representative": { "id": "VIT_07s0205g00090", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 55, "end": 205, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 35, 51, 96, 131, 164 ] }, { "node_id": 4737900, "distance_to_parent": 0.033502, "left_index": 1280, "right_index": 1305, "taxon_id": 91836, "taxon_name": "malvids", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 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"193DM237D3M260DM453D2M5D15M47D2M57D4MD5M29D2M24D3M259D2M84DM30D2M8D2M27D2M50D3M2D4M55D4M14D5M163D4M83D2M42D5M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D3M2D3M58D3M65D3M44D3MDM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM5D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D12M15D3M15D13M6D16MD2MD2M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D3M24D7M4D3M5D6M9D4M120D11M12D4M26DM2DM8D2M17DM30D5M7D11M2D4M5D2MDMD2M6D7M16D9M3D9M11D6M17D10M33D4M14D8M15D3M13D5M7D4M8DM7DM19D10M8D4M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 3641, "taxon_name": "Theobroma cacao", "assembly": "Theobroma_cacao_20110822", "representative": { "id": "TCM_000900", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 206, "end": 430, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 39, 55, 66, 91, 134, 202, 247, 282, 315, 358, 375, 412, 448, 504, 533, 557, 595, 616, 648 ] }, { "node_id": 4737905, "distance_to_parent": 0.273679, "left_index": 1281, "right_index": 1302, "taxon_id": 3700, "taxon_name": "Brassicaceae", "node_type": "speciation", "bootstrap": 95, "children": [ { "node_id": 4737909, "distance_to_parent": 0.136859, "left_index": 1296, "right_index": 1301, "taxon_id": 3701, "taxon_name": "Arabidopsis", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 426055, "distance_to_parent": 0.28719, "left_index": 1299, "right_index": 1300, "protein_stable_id": "fgenesh1_pg.C_scaffold_8002556", "gene_stable_id": "fgenesh1_pg.C_scaffold_8002556", "gene_description": "Putative uncharacterized protein", "sequence": "MQATANLPAIWNLSLCGSSSKVHIVNPRHRKSHALHCLRSEGHEEFDNSQDNLGLSSITKEAKHKDIWNLFREAQKNILILNKQRLAAVEELEKLKNEKDELLERINQLEAESQIVIKKDKSSLFWELLLRIDSMVINGLINIEEASSLRKLVKEHEANISEFPLDVLQQGDADILAELRLFINKGKRNGLHVIHICTEMAPLVSVGPLASYITGLSSALQGEGYMVEVILPKYSTLDLDEIEGLREIEADAYSYFNGQLHANRIWNGVVSGIGVTLIQPVYYSSMFSRDKVYGYQDDFDRFAYFSRASLDYIAKSGKQPDVLHIHNWQTAIVGPLFWDVFVNQGLVPPEKLELCGLDSAELHRLDRLQDNTNPHFVNILKGGVVYSNKVVIMSSSHSSIPGLEPTLAIHKVLKLNLTAKEIMTKVGQRDSPAKEEAPPATKKRFLTPGRFVTILCIINLINYVDRGVIASNGVNGSSKTCDAKGVCSAGTGIQGEFKLTNFEDGLLSSAFMVGLLVASPIFAGLSKRINPFKLIGVGLTVWTIAALGCGFSYNFWMIAVFRMFVGVGEASFISLAAPYIDDSAPVARKNFWLGLFYMCIPAGVALGYVFGGFIGNHLGWRWAFYIEAIAMAVFVVLSFCIKPPQQLKGFADKDSKKSSTSIETVAPTDAEASQIKTKTPKSKNLVVLFGKDLKALFSEKVFIVNVLGYITYNFVIGAYSYWGPKAGFGIYKMKNADMIFGGLTIICGIIGTLGGSYVLDRINATLSNTFKLLAASTLLGAAFCFTAFLMKNMYAFIGLFAVGEILIFAPQAPVNFVCLHCVRPNLRPLSMASSTVLIHILGDVPSSPLYGKMQDHLKNWRTSTLIITSILFVAAIIWGIGIFMNSVDRSNEVSEDDEVEEEKLESKAENSTLV", "cigar": "432D4M92DM82D5M14DMD2M60D3M172D2M276D3M5D4M118D3MD5M29D2M24D3M259D2M84DM30D2M8D2M28DM50D2M336D6M36D6M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D8M58D3M65D2M46D2MDM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM5D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MDM91D15M11D12M15D3M15D13M6D11M8D3M6D30M4D42M25DM14D23M4D5M19D10M4D201M2DM8D20M30D31MDMD2MDMD2M6D7M16D38M17D10M33D4M14D6M2DM14D3M13D5M7D2M42D6M8DM48D2M35D4MD19M51D6M3D8M17D4M4DM48D6M3DM14DM218DM13DM582DM11D2M107D3M1039D", "taxon_id": 81972, "taxon_name": "Arabidopsis lyrata subsp. lyrata", "assembly": "v.1.0", "representative": { "id": "fgenesh1_pg.C_scaffold_8002556", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 192, "end": 397, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR020846", "root": 20846, "start": 436, "end": 887, "name": "MFS_dom", "description": "Major facilitator superfamily domain" } ], "exon_junctions": [ 39, 50, 77, 120, 188, 233, 268, 301, 344, 381, 411, 450, 494, 528, 563, 588, 613, 649, 681, 771, 811, 854, 881 ] }, { "node_id": 425730, "distance_to_parent": 0, "left_index": 1297, "right_index": 1298, "protein_stable_id": "AT5G65685.5", "gene_stable_id": "AT5G65685", "sequence": "MLKILIMMGRFRVFYLFKLHLLLPAVFYFVVPGKFCRRRLKLFQTMQATANLPTIWNLSLRGSSSKVHIVNPRHRKSHALHCLRSEGHEEFDNSQKSLGQSSITKEAKHKDIWNLFREAQKNIMILNKQRLAAVDELEQLKKDKEELLERINQLEAESQIVIKKDKSSLFWELLLRIDSMVINGLVNIEEASSMRKLVKEHEANISVFPLDVLQQGDAEILAELRRFTNKGKRNGLHVIHICTEMAPLVSVGPLASYITGLSCALQEEGYMVEVILPKYSTLDLDEIEGLREIEADAYSYFDGQLHANRIWNGVVSGIGVTLIQPVYYSSMFSRDKVYGYQDDFDRFAYFSRASLDYIAKSGKQPDVLHIHNWQTAIVGPLFWDVFVNQGLEGTRILLTCQDFDKGLVPPEKLELCGLDPAELHRLDRLQDNTNPHFVNILKGGVVYSNKVVIMSSSHSSIPGLEPTLAIHKDKLFFAPFGMDNSMEKDLCCDLHVSAYTSIKNL", "cigar": "104D3M82D9M19D5M82D12M38D3M15D3M5DM34D7M8D6M92DM82D5M14DMD2M60D3M172D2M276D3M5D4M118D3MD5M29D2M24D3M259D2M84DM30D2M8D2M11DM67D2M336D6M36D6M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D8M58D3M65D2M46D2MDM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM5D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M72D16M11D12M15D3M15D13M6D11M8D3M6D10M7D13M903D4M4DM48D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 3702, "taxon_name": "Arabidopsis thaliana", "assembly": "TAIR10", "representative": { "id": "AT5G65685", "score": -25 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 237, "end": 458, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 84, 95, 122, 165, 233, 278, 313, 346, 389, 405, 442, 472 ] } ], "representative": { "id": "AT5G65685", "score": -25 } }, { "node_id": 4737920, "distance_to_parent": 0.071105, "left_index": 1282, "right_index": 1295, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "duplication", "bootstrap": 100, "duplication_confidence_score": 0.3333, "children": [ { "node_id": 4737923, "distance_to_parent": 0.041995, "left_index": 1289, "right_index": 1294, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 426051, "distance_to_parent": 0.001093, "left_index": 1292, "right_index": 1293, "protein_stable_id": "CDY45619", "gene_stable_id": "GSBRNA2T00082357001", "gene_display_label": "BnaCnng13270D", "sequence": "MQSAANFPRIWNPSPIGSSSKVQLVNLKQHRKAHALHCLRSEGHEEKLENSSQDKLGVSSVVKEDKHKDIWNLFREAQQNILYLNKQRLAAVEELEKLKNEKVELLERLNQLEAESQIVIKKDKSSLLWELLLRVDSMVLNGLIGTEEASSMRQLVREHQANISEFPLDVLQQGDAQVLAELRQLPNRGKRNGLHVIHICTEMDPLVSVGPLASYITGLSCALQGKGYLVEVILPKYSTLDLDEVEGLREIEADAYSYFNGQLYANRIWNGVVSGVGVTFIQPLYYSSMFSRDKVYGYPDDVDRFAYFSRASLDYIAKSGKQPDVLHIHNWQTAIVGPLFWDVFVNQGLEGTRILLYGLKLCLVPPERLELCGLDPASLHRADRLQDNTNPQMVNILKGGIVYSNKVVIMSSAPSKSIPGLEPTLAVHKEKLFFAPYGLDNSKWDPSIDVYLPQNYSAENLLGKSTCKVELQRQLGLEENGSATIVGCIFSEISGVDLESLKSIIRSRKKNDVQFVIMIMNEDQMIINEMERTQDEIEGGNLKVVTGSNEVVSHLIYAGSDIMVCLNFFQDPLLQVPLKALKYGTVPIELNPQTGYVGTHEQEATTANFINSLFGRMSLDQALDLMKDGRLWKLKIVEAMEKDLCCDVHISAYTSIKSL", "cigar": "432D4M92DM82D5M14DMD2M60D3M172D2M276D3M5D4M118D9M29D2M24D3M259D2M84DM30D2M8D2M27D2M50D2M335D7M36D6M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D8M58D3M65D2M46D2MDM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM5D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D3M74D18M11D12M15D3M15D13M6D12M7D3M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D3M24D7M4D3M5D6M9D4M120D11M12D4M26DM2DM8D2M15D3M30D5M9D9M2D6M6DMD2M6D7M16D9M3D10M10D6M17D10M33D4M14D6M18D2M13D5M7D2MDM8DM7DM19D10M8D4M15DM28D3M35D4MDM15D3M51D4M11D2M17D4M4DM48D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 3708, "taxon_name": "Brassica napus", "assembly": "AST_PRJEB5043_v1", "representative": { "id": "GSBRNA2T00082357001", "score": -50 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 195, "end": 412, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 40, 53, 80, 123, 191, 236, 271, 304, 347, 356, 361, 398, 429, 485, 514, 538, 577, 595, 626 ] }, { "node_id": 425854, "distance_to_parent": 0, "left_index": 1290, "right_index": 1291, "protein_stable_id": "Bo3g097790.1", "gene_stable_id": "Bo3g097790", "gene_description": "UDP-Glycosyltransferase superfamily protein", "sequence": "MQSAANFPRIWNPSPIGSSSKVQLVNLKQHRKAHALHCLRSEGHEEKLENSSQDKLGVSSVVKEDKHKDIWNLFREAQQNILYLNKQRLAAVEELEKLKNEKVELLERLNQLEAESQIVIKKDKSSLLWELLLRVDSMVLNGLIGTEEASSMRQLVREHQANISEFPLDVLQQGDAQVLAELRQLPNRGKRNGLHVIHICTEMDPLVSVGPLASYITGLSCALQGKGYLVEVILPKYSTLDLDEVEGLREIEADAYSYFNGQLHANRIWNGVVSGVGVTFIQPLYYSSMFSRDKVYGYPDDVDRFAYFSRASLDYIAKSGKQPDVLHIHNWQTAIVGPLFWDVFVNQCLVPPERLELCGLDPASLHRADRLQDNTNPQMVNILKGGIVYSNKVVIMSSAPSKSIPGLEPTLAVHKEKLFFAPYGLDNSKWDPSIDVYLPQNYSAENLLGKSTCKVELQRQLGLEENGSATIVGCIFSEISGVDLESLKSIIRSRKKNDVQFVIMIMNEDQMIINEMERTQDEIEGGNLKVVTGSNEVVSHLIYAGSDIMVCLNFFQDPLLQVPLKALKYGTVPIELNPQTGYVGTHEQEATTANFINSLFGRMSLDQALDLMKDGRLWKLKIVEAMEKDLCCDVHISAYTSIKSL", "cigar": "432D4M92DM82D5M14DMD2M60D3M172D2M276D3M5D4M118D9M29D2M24D3M259D2M84DM30D2M8D2M27D2M50D2M335D7M36D6M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D8M58D3M65D2M46D2MDM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM5D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MDM91D15M11D12M15D3M15D13M6D12M7D3M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D3M24D7M4D3M5D6M9D4M120D11M12D4M26DM2DM8D2M15D3M30D5M9D9M2D6M6DMD2M6D7M16D9M3D10M10D6M17D10M33D4M14D6M18D2M13D5M7D2MDM8DM7DM19D10M8D4M15DM28D3M35D4MDM15D3M51D4M11D2M17D4M4DM48D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 109376, "taxon_name": "Brassica oleracea var. oleracea", "assembly": "v2.1", "representative": { "id": "Bo3g097790", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 195, "end": 398, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 40, 53, 80, 123, 191, 236, 271, 304, 347, 384, 415, 471, 500, 524, 563, 581, 612 ] } ], "representative": { "id": "Bo3g097790", "score": -100 } }, { "node_id": 4737935, "distance_to_parent": 0.027821, "left_index": 1283, "right_index": 1288, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425984, "distance_to_parent": 0.009678, "left_index": 1286, "right_index": 1287, "protein_stable_id": "Bra024412.1-P", "gene_stable_id": "Bra024412", "gene_description": "AT5G65685 (E=4e-171) | soluble glycogen synthase-related ", "sequence": "MQSAANFPLKWNLSPLVSSSKVQLVNLKFRKAHALHCLRSEGHEEKFENSSQDKLGVSSVIKEDKHKDIWSLFREAQQNILYLNKQRLAAVEELEKLKNERVELLEKINQLEEESHIVVKKDKSSILWELLLRVDSMVLNGLIGTEEASSMRQLVREHQANISEFPLDVLQQGDAQVLAELRQLPNRGKRNGLHVIHICTEMDPLVSVGPLASYITGLSCALQGKGYLVEVILPKYSTLDLDEVEGLREIEADAYSYFNGQLHANRIWNGVVSGVGVTLIQPVYYGSMFSRDKVYGYSDDVDRFAYFSRASLDYIAKSGKQPDVLHIHNWQTAIVGPLFWDVFVNQGLEGTRILLTCQGFDSKASHVASFLFFPLCLVPPEKLELCGLDPASVHRADRLQDNTNPQLVNLLKGGIVYSNKVVIMPSSPSEGRTLHRNSIPGLEPTLAVHKEKLCFAPFGLDNSKWDPSIDVYLPENYSAEDIKGKSICKAELQRQLGLVEDVSTTIVGCIFSEISGVDLQSLKSLVRRTAKNDVQFVIMMMNEDQMIIKELEKAQDEIEKKDGRLWELKIMEAMEKDLCCDVHVSAYTSIKNL", "cigar": "432D4M92DM82D5M14DMD2M60D3M172D2M276D3M5D4M118D3MD5M29D2M24D3M259D2M84DM30D2M8D2M27D2M50D2M335D7M36D6M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D8M58D3M65D2M46D2MDM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM5D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3D2M3D5M25D4M28D18M11D12M15D3M15D13M6D22M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D3M24D7M4D3M5D6M9D4M120D11M12D4M26DM2DM8D2M15D3M30D5M9D9M2D4M352D4MDM15D3M51D4M11D2M17D4M4DM48D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 51351, "taxon_name": "Brassica rapa subsp. pekinensis", "assembly": "IVFCAASv1", "representative": { "id": "Bra024412", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 194, "end": 422, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 39, 52, 79, 122, 190, 235, 270, 303, 346, 375, 412, 450, 506, 535, 559 ] }, { "node_id": 426009, "distance_to_parent": 0.009622, "left_index": 1284, "right_index": 1285, "protein_stable_id": "CDY08760", "gene_stable_id": "GSBRNA2T00000691001", "gene_display_label": "BnaA06g24640D", "sequence": "MQSAANFPLKWNLSPLVSSSKVQLVNLKQHRKAHALHCLRSEEHEEKFENSSQDKLGVSSVVKEDKHKDIWSLFREAQQNILYLKKQRLAAVEELEKLKNERVELLEKINQLEEESHIVVKKADKSSILWELLLRVDSMVLNGLIGTEEASSMRQLVREHEANISEFPLDVLQQGDAQVLAELRRFPNKDKRNGLHVIHICTEMDPLVSVGPLASYITGLSCALQGKGYLVEVILPKYSTLDLEEVEGLREIEADAYSYFNGQLHANRIWNGVVSGVGVTLIQPLYYGSMFSRDKVYGYPDDVDRFAYFSRASLDYIAKSGKQPDVLHIHNWQTAIVGPLFWDVFVNQGLEGTRILLTCQGFDSKASHVASFLFFPLCLVPPEKLELCGLDPASVHRADRLQDNTNPQLVNLLKGGIVYSNKVVIMPSSPSEGRTLHRNSIPGLEPTLAVHKEKLCFAPFGLDNSKWDPSIDVYLPQNYSAEDIRGKSICKVELQRQLGLVEDVSTTIVGCIFSEISGVDLESLKSLVRRTAKNDVQFVIMMMNEDQMIIKELEKAQDEIEKTRFVTGNNEVVSHLIFAGSDIMLYLNFFQDPLLQVPLKALKYGTVPIELNPQTGNCFRHVGTHEQEATTTAKIFNSLFGRMSLGQALDLMKKDGRLWELKIKEAMEKDLCCDVHVSAYTSIKNL", "cigar": "432D4M92DM82D5M14DMD2M60D3M172D2M276D3M5D4M118D9M29D2M24D3M259D2M84DM30D2M8D2M27D2M50D2M335D7M36D6M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D9M57D3M65D2M46D2MDM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM5D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3D2M3D5M25D4M28D18M11D12M15D3M15D13M6D22M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D3M24D7M4D3M5D6M9D4M120D11M12D4M26DM2DM8D2M15D3M30D5M9D9M2D4M8DMD2M6D7M16D9M3D10M10D6M17D10M33D4M14D9M14D3M13D5M7D4M8DM7DM19D10M8D4M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM48D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 3708, "taxon_name": "Brassica napus", "assembly": "AST_PRJEB5043_v1", "representative": { "id": "GSBRNA2T00000691001", "score": -50 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 196, "end": 424, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 40, 53, 80, 123, 192, 237, 272, 305, 348, 377, 414, 452, 508, 537, 561, 565, 598, 616, 652 ] } ], "representative": { "id": "Bra024412", "score": -99.990322 } } ], "representative": { "id": "Bra024412", "score": -99.962501 } } ], "representative": { "id": "Bra024412", "score": -99.891396 } } ], "representative": { "id": "TCM_000900", "score": -99.867533 } } ], "representative": { "id": "TCM_000900", "score": -99.834031 } }, { "node_id": 4737891, "distance_to_parent": 0, "left_index": 1273, "right_index": 1278, "taxon_id": 91835, "taxon_name": "fabids", "node_type": "speciation", "bootstrap": 3, "children": [ { "node_id": 425886, "distance_to_parent": 0.179394, "left_index": 1276, "right_index": 1277, "protein_stable_id": "EMJ07521", "gene_stable_id": "PRUPE_ppa002460mg", "gene_description": "UDP-Glycosyltransferase superfamily protein", "sequence": "MKALLSSVIIPWQQPHPKPRIPVVCCSTINGSSSSSSEANLQSSQPQECKSSNAEEPKQSEIWRLFREAQKNILHLNQHRLKAVEDLNKINIEKQLLVDRIEQLELEKQTAVAKPQDRLSMFWELLLRIDSMVLMGMVTIGEASNLRRLVMDHKVSVAEVFNDTLQKSDAEILAELRHFLERNQRNGFHIVHVCTEMAPLVSVGSLASYVTGLSCALQRKGHLVEVILPKYSNLDLDEVQGLQEIEAECYSYFNGQLHGNRIWTGVVYGIGVTLIQPLYYSSFFNRERVYGYSDDFERFTYFSRASLDYIVKSGKQPDVIHIHNWETAIIGPLFWDIIVKQGLEGTRVLLTCHDLNSQCLEHPEKLALCGLDPARLHRPDRLQDTTKAHLVNVLKGGVVYSNKVVIMSSIHSKGRVIHSLSHGLDHTLNIHKNKVVIAPCGFDNCTWDPSTDNFLPQQYSVKDMKGKAVCKAALQQHLGLSEHSSTILVGCIFSKVSDVDLENLRAVFRKARRIDVQFIIKGISKISSVNKLGLVHEPLKDKNVRFIDGHDEKQSHLIFAGSDIILCQSFHDPVLQVPLKALKYGAAPIAVNSNDDGFRNFVEHDYETTNFSRFISSTFGNMSITQALDEIRNNPSKWKRKIMDAMEMDFSWDAECCDIHASAYTAIKNL", "cigar": "432D2M260D3M450D3M5D6MD7M116DM29D2M24D2M474D3M55D4M14D5M163D4M83D7M36D6M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D8M58D3M65D3M44D3MDM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM5D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D12M15D3M15D13M6D16MD5M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D3M24D7M4D3M5D6M9D4M120D11M12D4M26DM2DM8D2M17DM30D5M7D5MD5M2D4M5D2MDMD2M6D7M16D9M3D9M11D6M17D10M33D4M14D8M15D3M13D5M7D4M8DM7DM19D10M8D4M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 3760, "taxon_name": "Prunus persica", "assembly": "Prupe1_0", "representative": { "id": "PRUPE_ppa002460mg", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 189, "end": 428, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 40, 48, 72, 117, 185, 230, 265, 298, 341, 358, 395, 432, 488, 517, 540, 578, 599, 631 ] }, { "node_id": 425817, "distance_to_parent": 0.165415, "left_index": 1274, "right_index": 1275, "protein_stable_id": "POPTR_0007s14460.1", "gene_stable_id": "POPTR_0007s14460", "gene_display_label": "POPTRDRAFT_1083906", "gene_description": "Predicted protein", "sequence": "MKMESIINSTILSLACFPKSNPSIHHQKTVKARRTVCCSLSSSKNSNSEGDANGLLKEEEEEKYNDIWLLFKEAQQNILYLNKLRLVAVEELNKANREKQLLLDKIQQLEAVNKLGNEQSLWRELLLRIDSMVLTGLIDSAEASGMRKAVMGNKFSVALVFFDIRQKTDAELLAQLRHFSVGSRKNGFHIIQICTEMEPLVSVGSLSSYVTGLSKALQKKGHIVEVILPKYACLDLTEMQGLREIEAELYSYFNGQLHGNRIWTGIVHGIGVTLIQPLYYSSFFDRERVYGYSDDFERFTYFSRASLDYIAKSGKQPDVLHIHNWETAIVGPLFWDIFVKQGLGGTRVLLTCHGFDSQCLEQPDKLALCGLDPARLHRPDRLQDHTMTHLVNILKGGLVYSNKVVMVQSIYSKERIINSFSHGLEPTLAIHKDKLLVSPCGFDNSTWDPSKDKFLPKNYSADDLKGKSICKVALQQQLGLSKNSSTVLVGCISTESLDFDLNNQKAVWNATPKSVQFIFMGSKATSADGALEYLKKELKDETVRFINKYDEALLHLIFAGSDIILCQSFHDPLLQVPLKALKYGAAPVAVTSNENKFRHFVDREQETTRFSRFISSTFGYLSLSQAVDEIKNSPSKWKQKMVDAMAKDFSWNAECCDVHVSAYTALKSL", "cigar": "193DM237D3M260D3M450D3M5D15M47D2M57D4MD3M31D2M24D2M416D2M50DM5D3M55D4M14D5M163D4M83DM46D2M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D2M3D3M58D3M65D2M47D3M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM5D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D12M15D3M15D13M6D16MD5M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D3M24D7M4D3M5D6M9D4M120D4MD6M12D4M26DM2DM8D2M17DM30D5M8D10M2D4M5D2MDMD2M6D7M16D9M3D9M11D6M17D10M33D4M14D8M15D3M13D5M7D4M8DM7DM19D10M8D4M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 3694, "taxon_name": "Populus trichocarpa", "assembly": "JGI2.0", "representative": { "id": "POPTR_0007s14460", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 189, "end": 428, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 41, 77, 116, 185, 230, 265, 298, 341, 358, 395, 432, 488, 516, 539, 577, 598, 630 ] } ], "representative": { "id": "PRUPE_ppa002460mg", "score": -99.820606 } } ], "representative": { "id": "TCM_000900", "score": -99.82676 } }, { "node_id": 4737940, "distance_to_parent": 0.008482, "left_index": 1254, "right_index": 1271, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "speciation", "bootstrap": 1, "children": [ { "node_id": 425819, "distance_to_parent": 0.292328, "left_index": 1269, "right_index": 1270, "protein_stable_id": "VIT_07s0205g00110.t01", "gene_stable_id": "VIT_07s0205g00110", "gene_description": "UDP-Glycosyltransferase superfamily protein", "sequence": "MGETVESNDSSKRRVIKAVIRSQRVDLFCLQETKIQTLSEGLVRSLGSGRWSNWVALDALGSIGGMLVCWDKRSLEVMETEVGNFSISCRIRNVEDGLTWILTGVKRPFSKKDRDCLWEELGAIRGLWEDPGCLGGDFNVILSQRERNRQGRLTGAMRSFAQTVDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLGFYSKNLQGGVVYSNKVVIMSSMHSKASIIHSLSHGLESTFTIHKDKLLIAPYGFDKFTWDPSRDKFLPENYTADNMKGKAVCKVALQQHLGLTEHASVILVGCIFSEVSDVDVENLKEVVLIASRRDVQFVFTRLSKVPSKNTSLDSFLEEIKDENVRFIDKCDEALSHLIFAGSDIILCPSFHDPMLQVPLKAMRYGAAPIAITSIGKRFRHVVDHDFQSTKLSQFLNTTFAYMSLNEALDEIKSNSMQWNQKIMDAMTKDFSWDAECYDIHISAYTALKNL", "cigar": "432D4M92DM1532D4M83D5M844DM2DM5D2M7D3M10D4M60DM20D10M164D8M427D5M65D3M45D2M342D14M7D8M2D12M8D9M254D8M21D8M20D4M45D2M9DM6D8M34D7M2D8M33D2M5D13M3D12M2D10M3D7M20D16M30D4M17DM238D8M6D16MD5M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D3M24D7M4D3M5D6M9D4M120D11M12D4M26DM2DM8D2M17DM30D5M7D11M2D4M5D2MDMD2M6D7M16D9M3D9M11D6M17D10M33D4M14D8M15D3M13D5M7D4M8DM7DM19D10M8D4M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 29760, "taxon_name": "Vitis vinifera", "assembly": "IGGP_12x", "representative": { "id": "VIT_07s0205g00110", "score": -100 }, "domains": [ { "id": "IPR005135", "root": 5135, "start": 9, "end": 167, "name": "Endo/exonuclease/phosphatase", "description": "Endonuclease/exonuclease/phosphatase" } ], "exon_junctions": [ 7, 166, 247, 303, 332, 356, 394, 415, 447 ] }, { "node_id": 4737944, "distance_to_parent": 0.176898, "left_index": 1255, "right_index": 1268, "taxon_id": 3814, "taxon_name": "Papilionoideae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 4737961, "distance_to_parent": 0.054772, "left_index": 1262, "right_index": 1267, "taxon_id": 3847, "taxon_name": "Glycine max", "node_type": "duplication", "bootstrap": 100, "duplication_confidence_score": 1, "children": [ { "node_id": 425858, "distance_to_parent": 0.037725, "left_index": 1265, "right_index": 1266, "protein_stable_id": "GLYMA09G33665.1", "gene_stable_id": "GLYMA09G33665", "gene_description": "Uncharacterized protein", "sequence": "MYDDNQNVKQDNIWQLSKEAQQNNLSTCSELLLRIDTMVLSSMISAGEASELRSLVMNYKVSPPDVFNIISHKKDPELLGELRRFSDGHKNNGFYTVHICTEMTPLVPRGSVASYVTGISRALHRKGHLVELILPKYASLNLDGVQGLHEVNVEVTSYFNGQLHGNRIWTGVVFGIGVTLIEPKYYSSFFSREMIYGYPDDFERFSYFCRASLDYIVKCGKQPDVLHLHNWGTAIVGPLFRDTFVKQCCHYLPSILQGGVVYSNRVVIMSSIYPEHLVIAPYGLDKSTWDPLTDYFLPENFNAENMNGKAVCKAALLQQLGLSEHSSAILVGCIFSEGRDLDEKRVEEVILNAKQHDVQDDNLKFVPTYDEALLHLVFAGSDIILCQSFLDPTDEIPLIALRYGAAPLALVPDASSNRSFINQDHEATKYSKLINSSFVNMFISLAIDEIRTNPAMWKRKIMQAMAHDLSWDGECYDVHVEAYSTIKNM", "cigar": "2152DM39D5M546DM226D2M13D5M16D2M7D3M10D3M61DM699D3M44D3MDM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM5D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MDM12D3M147D13M6D13M34D12MD11M21D2M6D4M25DM14D4MD5M8D5M4D3M24D7M4D3M5D6M9D4M120D11M12D4M26DM95D2MDMD2M6D7M16D9M3D9M11D6M17D10M33D4M14D8M15D3M13D5M7D4M8DM7DM19D10M8D4M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 3847, "taxon_name": "Glycine max", "assembly": "V1.0", "representative": { "id": "GLYMA09G33665", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 97, "end": 243, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 23, 91, 136, 171, 204, 247, 251, 276, 330, 359, 397, 418, 450 ] }, { "node_id": 425700, "distance_to_parent": 0.011364, "left_index": 1263, "right_index": 1264, "protein_stable_id": "GLYMA01G02321.1", "gene_stable_id": "GLYMA01G02321", "gene_description": "Uncharacterized protein", "sequence": "MGTLFFFHSPIPHFSLPSMPKPIALPPLSCLRNNGDVNSLHEQKSEGNKNVDMSQSMCDDDQNVKQDNIWQLFKEAQQNILYLNKQRLGAIEKLDKTNREKQSLLSKIKKLEAEKQAGAGKDNLSTCSELLLRIDAMVLSSMISAGEASELRSLVMNHKVSLADVFNIISHKKDPELLGELRRFSDGHKKNGFHIVHICTEMTPLVPRGSVASYVTGISRALQRKGHLVEVILPKYASLNLDEVQGLHEVNVEVTSYFNGQLHGNRIWTGVVFGIGVTLIEPKYYSSFFSHEMIYGYPDDFERFSYFCRASLDYIVKCGKQPDVLHLHNWETAIVGPLFWDTFVKQGLEGTRILFTCHGFNSQGIEQPDKLALCGLDPLRLHRPDRLQDNTNTQLVNILKGGVVYSNRVVIMSSIYPKHVIVHNLSHELEPTLNVHRDKLVIAPYGLDKSTWDPSTDYFLPENFNAENMNGKAFCKAALLQKLGLSEHSSTILVGCIFSEGRDLDRKRVKEVILNAKQYDVQLQFIFMGTSERLIMNQAPESLQTEFKDDNLKFVPTYDEALLHLVFAGSDIILCQSFLDPTDEIPLIALRYGAAPIALAPDASSNRSIPFDRSFINQDHEATKYSELINSSFVNMSISLAIDEIRTNPAMWKRKIMQAMAHDLSWDGECYDVHVEAYSAIKNM", "cigar": "432D2M260D3M389D2M59D3M5D8M5DM109D2MD5M29D2M24D3M259D2M84DM30D2M8D2M27D2M50DM65D2M14D5M163D4M83D5M39D5M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D7M60D2M65D3M44D3MDM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM5D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D12M15D3M15D13M6D16MD5M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D3M24D7M4D3M5D6M9D4M120D11M12D4M26D4M8D2M17DM30D5M7D11M2D4M5D2MDMD2M6D7M16D9M3D9M11D6M17D10M33D4M14D9M9D8M13D5M7D4M8DM7DM19D10M8D4M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 3847, "taxon_name": "Glycine max", "assembly": "V1.0", "representative": { "id": "GLYMA01G02321", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 194, "end": 434, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 32, 44, 55, 79, 122, 190, 235, 270, 303, 346, 363, 400, 437, 493, 522, 548, 586, 607, 645 ] } ], "representative": { "id": "GLYMA01G02321", "score": 0.011364 } }, { "node_id": 4737945, "distance_to_parent": 0.048365, "left_index": 1256, "right_index": 1261, "taxon_id": 163742, "taxon_name": "Trifolieae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425959, "distance_to_parent": 0.050813, "left_index": 1259, "right_index": 1260, "protein_stable_id": "Tp57577_TGAC_v2_mRNA1052", "gene_stable_id": "Tp57577_TGAC_v2_gene1045", "sequence": "MVETAMRGYHRDGYDRDEYEGYDDYEDDEQLEEGEEYEEEGVEEYVVEEPRKPTKEELEYLELRQKLKESIRNKMKKENSTSLANSGSRKKQIHQDNYGSFFGPSQPVIAQRVIQESKSLLENGHLVPRPSNSPQINKSTNKVTNGVLKSSAHKQPPRVSEKLVKAEKLKVTRDYSFLLSDDAEIPAPSKEPPSRNTSMRSSVGQAAQVPGKSKQSFSNGGKLVRSTGENRKPVAGASHLAPKPRSNYKLSSTSQASKASTDSRKQLGSNIANGPGRPMLPKGIPSKMPVNKMGSKSVTPGMRNPRPPPSKVSSSLPKHGVDQRKDVREQYKPKVLPRQPVAPSKAQVSKPPLKQIPKRPDLHNQRPKNNVRKRHLDEPEDEMDYRSAIRSMFRYNPNNFVDDDDDPNMEVGFDQIAKEERRSAKIAREEDERELRLIEEEEERERRRRKKLRLGLSEHSSIILVGFNFPEGADIDEKKIKDIVLNTNQHDVQDRFDGKKMKEWLYICNQFFTLDATPDDSRVRFNSPRRSKFNTYPSWTKYVVDVTQRFGLGEVFEDPLAELINFSSVQFNSTMPILGFSSHFLFHLPKPISLPPLTCYRNKGDVNSFHEQRLEDNKNDDMSKSLSHDDKNVKHDNIWQLFKEAQQNILYLNNQRLSAIEELNKTKKEKQSLLDKIKTLEAEKHETADNLSICSELLLRIDSMVLGSVINPAEASNFRSLVLSHKLSVADIFNVISHKRDSDLLRELRHFSDQSKKNGFHVIHICTEMTPLVSRGSVASYVTGISRALQRKGHLAEVILPKYTCLNLDEVQGLREVNVEAYSYFNGQLHGNKIWTGVVYGIGITLIEPLDYSSFFSREMIYGYPDDFERFSYFCRASLDYIVKCGKQPDILHLHNWETAIVGPLFWDIFVNKGLGGTRILLTCHDFNSQGIEKPNKLALCGLDPSSLHRPDRLQDNTNTQFINILKGGVVYSNRVVIMSSIHPKHSIVRNLSHELKPTLNDHEDKLTLAPYGFEKTTWDSSTDYFLPENFNAENINGKAVCKVALLQRLGLSEHSSIILVGCNFPEGADIDEKKMKDIVLNTKQHDVQFIFMETSERPTLNQALESLQKELKDDDNIKFVRAYDEALSHLLFAGSDIILCRSFLDPTDETPLKALRYGAAPIAIGPEAHTNRVISFDRNFIHHDQEATKYSKLINNTFGNMSLDLAIDEIRSNPSKWKRRIMDAMAHDLSWDGECYEVHVAAYSAIKNM", "cigar": "432D4M92D24M15D21M22D6M14DMD518M5D14M109D2MD5M29D2M24D3M259D2M84DM30D2M8D2M27D2M50DM65D2M14D5M163D4M83D5M39D5M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D6M62DM65D3M44D3MDM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM5D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D12M15D3M15D13M6D16MD5M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D3M24D7M4D3M5D6M9D4M120D11M12D4M26DM2DM8D2M17DM30D5M7D11M2D5M4D2MDMD2M6D7M16D9M3D9M11D6M17D10M33D4M14D9M9D8M13D5M7D4M8DM7DM19D10M8D4M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 57577, "taxon_name": "Trifolium pratense", "assembly": "Trpr", "representative": { "id": "Tp57577_TGAC_v2_gene1045", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 761, "end": 981, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 17, 97, 136, 161, 203, 305, 347, 394, 423, 453, 464, 495, 565, 601, 613, 624, 648, 689, 757, 802, 837, 870, 913, 930, 967, 1004, 1060, 1089, 1113, 1152, 1173, 1211 ] }, { "node_id": 425731, "distance_to_parent": 0.050715, "left_index": 1257, "right_index": 1258, "protein_stable_id": "AES95883", "gene_stable_id": "MTR_5g030600", "gene_description": "starch synthase", "sequence": "MVALLNSTMPILGIPSSFLQKPISLPALSCFRNNGDVSGLHEQRLEVNKNEDISKSLSDDGQNVKHDNIWQLFREAQQNILYLNNQRLGAIEELNKIKKEKQSILDKIKKLEAVKQESADKLSICSELLLRIDSMVLGNVISPAEASDFRSLVLHHKVSVADVFNVISHKRDSELVGELRHFSDQSKKNGFHIIHICTEMTPLVSRGSVASYVTGISRALQRKGHLAEVILPKYACLDLDEVQGLREVNVEVYSYFNGQLHGNRIWTGVVYGVGVTLIEPLDHSSFFSREMIYGYPDDFERFSYFCRASLDYIVKCGKQPDILHLHNWETAIVAPLFWDVFVNKGLGGTRILLTIHNFNSQGTEQPDKLALCGLDPSSLHCHRLQDNTNTQLVNILKGGVVYSNRVVIMSSIHPKHAIIRNLSNELEPTLNVHGDKLSVAPYGFEKSTWDPQTDYFLPENFNAENMNGKAVCKVALLQRLGLSEHSSTILVGCSFSEGADIDEKKMKDIVLNAKKHDVQFIFMETSERPDLNQALESLHMEFKDDDNIKFVHSYDEALSHLLFAGSDSILCRSFHDPTDETPLKALRYGAVPIAVDSDSHTNRNFINHDQEATKYSKLINNTFGNMSLGLAIDELRSNPSKWKRRIMEAMAHDLSWDGECYEVHVAAYSAIKNL", "cigar": "432D2M260D3M450D3M5D11M112D2MD5M29D2M24D3M259D2M84DM30D2M8D2M27D2M50DM65D2M14D5M163D4M83D5M39D5M546DM226D2M13D5M16D2M7D3M10D3M61DM20D10M165D15MDM45D4M159D4M141D6M62DM65D3M44D3MDM338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D12M2DM5D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D4MD7M15D3M15D13M6D16MD5M6D10M7D14MD11M21D2M6D4M25DM14D4MD5M8D5M4D3M24D7M4D3M5D6M9D4M120D11M12D4M26DM2DM8D2M17DM30D5M7D11M2D5M4D2MDMD2M6D7M16D9M3D9M11D6M17D10M33D4M14D8M15D3M13D5M7D4M8DM7DM19D10M8D4M15DM28D3M34D5MDM15D3M51D4M11D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM582DM11D2M107D2M1040D", "taxon_id": 3880, "taxon_name": "Medicago truncatula", "assembly": "MedtrA17_4.0", "representative": { "id": "MTR_5g030600", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 192, "end": 411, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 32, 44, 55, 79, 120, 188, 233, 268, 301, 344, 361, 397, 434, 490, 519, 543, 582, 603, 635 ] } ], "representative": { "id": "MTR_5g030600", "score": -99.949285 } } ], "representative": { "id": "MTR_5g030600", "score": -99.90092 } } ], "representative": { "id": "MTR_5g030600", "score": -99.724022 } } ], "representative": { "id": "TCM_000900", "score": -99.81179999999999 } } ], "representative": { "id": "TCM_000900", "score": -99.78948799999999 } } ], "representative": { "id": "TCM_000900", "score": -99.709937 } } ], "representative": { "id": "TCM_000900", "score": -99.638733 } } ], "representative": { "id": "TCM_000900", "score": -99.273701 } }, { "node_id": 4738044, "distance_to_parent": 0.074254, "left_index": 999, "right_index": 1248, "taxon_id": 3193, "taxon_name": "Embryophyta", "node_type": "speciation", "bootstrap": 29, "children": [ { "node_id": 4738049, "distance_to_parent": 0.199845, "left_index": 1026, "right_index": 1247, "taxon_id": 3398, "taxon_name": "Magnoliophyta", "node_type": "speciation", "bootstrap": 6, "children": [ { "node_id": 425893, "distance_to_parent": 0.12982, "left_index": 1245, "right_index": 1246, "protein_stable_id": "ERN18431", "gene_stable_id": "AMTR_s00189p00041140", "gene_description": "starch synthase 4", "sequence": "MAGTLSMLMMPRGFHGFTCNKLEARRPIALLRFPTFCRTRKNLGSQRRKRLKKISMKQPSLNMKSSSPSDDNALNAPKGGISSSPVISSAKPDSLSSMQGVEKVDTQDLTLTKDVRNYLMEDDGSGQQLSNLQLEDLIEMIRNAEQNILLLNQARVRALEDLDKILSEKEALQGEINLLEMRLAETDARLKVATQEKINVELLEDQLEKLKKEMAERGPSSTEDGQDPSESQNNPLNRQSLASHCSDFSSLNEEVTALKEENKLLKNDIEVLNAKLAEIDKTDEKILAVVKERSVLEYSLAELESKLVIAQESISELASMKVEFKTLRGNVEHLQALLEKPSEQANHALNVVQQNQELQKKVDNLEAYLDEAKAFNSLSEQQLLQQQVKMLEQRLLQSDQEIQSQVQLYQDSINEFQVTLRRLKDENKERQVEAPVVDMPWEFWSRLLLVIDGWLLEKKISPNDAKLLRVMAWKRDARIRETFLTCKDKNESEAVASFLKLTSSRTSQGLYVIHIAAEMAPVAKVGGLGDVVSGLGKALQRKQHLVEVILPKYDCMQYDRIQSLKALDVVVQSYFDGQLFKNKVWSGIIEGLPVYFIEPLHPAKFFWRGQFYGEHDDFKRFSYFSRAALEFLLQAGKKPDIIHCHDWQTAFVAPLYWDIYTPKGLNSARIAFTCHNFEYQGTTPTSELTSCGLDVHQLNRPDRMQDNLSQHLVNSVKGGIVFSNIVTTVSPTYAQEVRTPEGGRGLHITLNAHSRKFFGILNGIDNEAWDPARDAFLRFQYNANDLHGKAENKDALRKQLKLSSIDANMPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFLLLGSSPVPNIEREFEGIASNFRNHPHIRMILKYDEILSHSIYAASDMFIVPSLFEPCGLTQMIAMRYGSIPIARKTGGLNDSVFDVDDDMVPLQFRNGFTFLTPDEKGVNSALDRAISYYKKNPEWWQHLVQKAMNVDFSWDSSASQYEDLYENSVSRARAANLAQST", "cigar": "432D4M92D3M103DM55D6M450D3M11D7M50D2M52D6M337D4M54D4M11DMD3M120D8M55D4MD5M8D5M163D6M78D21M263D2MD4M117D2M19D5M72D7MD4M65D4M6D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D13MD6MD27M6D21MDM45D4M12D18M8D2M9D3MD4MD13M58D26M4D4M12D3M38D3M19D6M42D12M5D17M5D15M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D8M347D", "taxon_id": 13333, "taxon_name": "Amborella trichopoda", "assembly": "AMTR1.0", "representative": { "id": "AMTR_s00189p00041140", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 512, "end": 751, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 805, "end": 959, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 44, 119, 147, 507, 524, 565, 591, 652, 717, 741, 811, 853, 903, 924, 949 ] }, { "node_id": 4738052, "distance_to_parent": 0.061522, "left_index": 1027, "right_index": 1244, "taxon_id": 3398, "taxon_name": "Magnoliophyta", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4738056, "distance_to_parent": 0.056265, "left_index": 1106, "right_index": 1243, "taxon_id": 4734, "taxon_name": "commelinids", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4738080, "distance_to_parent": 0.116481, "left_index": 1117, "right_index": 1242, "taxon_id": 4479, "taxon_name": "Poaceae", "node_type": "duplication", "bootstrap": 95, "duplication_confidence_score": 0.4545, "children": [ { "node_id": 4738136, "distance_to_parent": 0.091025, "left_index": 1196, "right_index": 1241, "taxon_id": 147380, "taxon_name": "Oryzeae", "node_type": "speciation", "bootstrap": 14, "children": [ { "node_id": 425885, "distance_to_parent": 0.025718, "left_index": 1239, "right_index": 1240, "protein_stable_id": "LPERR01G25000.1", "gene_stable_id": "LPERR01G25000", "sequence": "MAACGSAAAAAEYSALLSLRWGPRTRGRFAVSCRARPGNVSAQQKKKRGKNIAPKQLSSNTKLLPTTGENEQLPNTSSRTSTQPPQQNTSHENDNDGAIGQRDVNNAAIGNEQQERSKDNHFESDVQLQDLGEMIQNMEKNILLLNQARLRAIEDVDRILTEKEALEKKVNILEMKLSKTLATKGNINVDTIGDHLEKFTKEMLIESALSGGSPAHLCESPLFTEMTVLKEENRLLKVDAQFLKTKITELAEAEEFLFKLEKERSLLDATVRELESRFLVAQTDIWKVTPLQYDVWMDKVENLQRMLECLINHVEKYVALLDQHDDLQDKIDELESLLREGETSEFSPYVVELLQKKLEAAKGRHQAGFQETNIHVQVYRQLIEEFQENLGKLIEESDRLEHSASGMSSEFWSHILLMIDGWFLEQKIPNTDANMLREMAWKRDDRICEAYFACRGAKESDVGGLADVVAGLGKALQTKGHLVEIILPKYDCMQLDQITNLKVLDVVIKSYFDGNLFSNNVWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRYSYFSRAALELLYQSGKKIDIIHCHDWQTAFVAPLYWDIYATRGFNSARICFTCHNFEYQGTAPAPDLSYCGLDVERLDRADRMQDNAHGRINVAKGGIVYSNIVTTGGHGLQDTLKMHSRKFVGILNGIDTETWNPSTDRFLAVQYSATDLQGKAANKTFLRKQLGLNTEDTSQPLVACITRLVPQKGLHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGVADQLQKNNNIRIILKYDEALSHCIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLSDSVFDFDDEKIPVELRNGFTFARTDEQDLSSCLERAFSYYSRKPMVWKQLVQKDMQIDFGWDSPASQYEDLYQSSITLHNLNERSKCSGARKEEKNIAQSSSHRSLPASSKGLKVKALHYTLRRRRRSPEIHSLTGDEVGGVGPGVVVDGISQVVGQVLEGALAGNNGLDEETEHGEHGEATVLNLLHLELGKRLGVISETKRVEAAAGVERVDDLAERTTGNAVPLNGTHEHDLASPDCKDALRVDQARVAEVIEAALAEDLLEPDGLAELNAVAGEELREDAPERAEHGPPAVDHLQLTVLGECLGVGREAGGVPTVVTGEFTCEVAWWLAGEWAEVEHAVWAVPRAAGCGGLGRWLAHGDAALAEQVGGLGQLAGESRGGECHGGSRH", "cigar": "432D3M199DM512D2M14D4M50D2M52D8M75D3MDM84D2M158D2M9D4M54D4M11DMD3M67DM51D9M55D4MD5M8D5M163D6M2D13M66D8M35D6M356D2M19D5M72D7MD4M75D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M50D7M2D13MD6MD13M24D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6M3D8M26D9M338D8MD7M7D22M8D10M164DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D5M14D3M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D160M11D16M97D7M42D3M6D2M44D3M404D10M9D4M21DMD2M15D4M52D16M13D4M21D10M65D4M33D70MD", "taxon_id": 77586, "taxon_name": "Leersia perrieri", "assembly": "Lperr_V1.4", "representative": { "id": "LPERR01G25000", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 460, "end": 664, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 728, "end": 879, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 41, 115, 141, 461, 502, 528, 589, 653, 664, 734, 776, 826, 847, 872, 919, 1002, 1108 ] }, { "node_id": 4738137, "distance_to_parent": 0.003943, "left_index": 1197, "right_index": 1238, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 14, "children": [ { "node_id": 425972, "distance_to_parent": 0.028011, "left_index": 1236, "right_index": 1237, "protein_stable_id": "OB01G38130.1", "gene_stable_id": "OB01G38130", "gene_description": "Uncharacterized protein", "sequence": "MAACGAAAAADYSALLPLRCGPGTRRRFAVSCRARPGNLSTQQKKKRGKNIAPKQLSSNTKLLLTTEENGQLPNTSLRTSMQSHQKSTSSEDDTTGAIGQRDEKFADIGNEQQERSKDKHFESGVQLEDLGEMIQNMEKNILLLNQAHLQAIEDVGRILTEKEALQKKVNILEMKLSKTLAAEGDINTDVLGNHLEKFTIEMLIESALTGGNPVHLRESPLYMELTVLKEENMLLKADAQFLKAKIIELAQAEEFLFKLEKERSLLDASIREHESRFLVAQTDIWKVAPLQYDVWMEKVENLQHILGCLTNDVNKYVALLDQHDDLQDKIDELEASVREGRTSEFSPYVVELLQQKLKAAKSHRQEGHQETNSHIQVYQQLIEEFQENLGKLMEESGRLEYSANGMPSEFWSHILLMIDGWFLERKISNTDANMLREMTWKRDDRICEAYFACSGAKEGDVMEGFLKLTLSGNSQCSSALHIVHIAAEMAPVAKVGGLADVVAGLGKALQTNGHLVEIILPKYDCMQLDQITNLKVLDVVIQSYFDGNLFSNNVWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRYSYFSRAALELLYQSGKKIDIIHCHDWQTAFVAPLYWDIYATRGFSSARICFTCHNFEYQGTAPAPDLSYCGLDVEKLDRPDRMQDNAHGRINVAKGGIVYSNIVTTVSPTYALEVRSEGGHGLQDTLKTHSRKFVGILNGIDTETWNPSTDRFLAVQYSATDLQGKAANKAFLRKQLGLYSEDAPQPLVGCITRLVPQKGLHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGVADQFQNNNNIRLILKYDEALSHCIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLSDSVFDFDDETLPAELRNGFTFARTDEQDLTSCLERAFRYYSRKPMVWKQLVQKDMQIDFSWVSPASQYENLYHSAVAQARGVAQT", "cigar": "432D3M199DM512D2M15D3M50D2M52D8M75D3MDM84D2M158D2M9D4M54D4M11DMD3M67DM51D9M55D4MD5M8D5M163D6M2D13M66D8M35D6M356D2M19D5M72D7MD4M75D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M50D7M2D13MD6MD13M24D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6M3D8M26D9M338D8MD7M7D22M8D22M8D5M53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 4533, "taxon_name": "Oryza brachyantha", "assembly": "Oryza_brachyantha.v1.4b", "representative": { "id": "OB01G38130", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 481, "end": 719, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 776, "end": 921, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 40, 114, 140, 474, 494, 535, 561, 622, 686, 709, 779, 821, 871, 892, 917, 976 ] }, { "node_id": 4738138, "distance_to_parent": 0.012155, "left_index": 1198, "right_index": 1235, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 28, "children": [ { "node_id": 425912, "distance_to_parent": 0.010481, "left_index": 1233, "right_index": 1234, "protein_stable_id": "OPUNC01G29020.1", "gene_stable_id": "OPUNC01G29020", "sequence": "MAACGAAAAEYSALLSLPCGPSTRRRFAVSCHARPPGNLSAQQKKKRGKNIAPKQLSSNTKLLLTTEENGQLPSTSLRTSMQPPQKSTSSEDDTNGAIGQRDEKISAVGNEQQELLNRARLQAIEDVDKILTEKEAMQKKVNILEMKLSKALATKGNINTDILGDHLEIFTKEMLIESALSGGNPAHLCDSPLFTELTILKEENMLLKADAQFLKVKIVEFAEAEEFLFKLEKERLLLDATVRELESRFLVAQTDIWKVVPLQYDVWMEKVENMQHMLGCLRNHVEKYAALLDQHDDLHDKIDELETSLREGKTSEFSPYVVEVLQQKLKAAKSHHQAGHQETSTHIQVYQQLIEEFQENLGRLIEESGRLEHSANGVPSEFWSHILLMIDGWFLERKIPNTDAHMLREMAWKRDDRICEAYFSCRGAKESDVMETFLKLTLSGNSRCSSGLHIVHIAAEMAPVAKVGGLADVVAGLGKALQTKGHLVEIVLPKYDCMQLDQITNLKVLDVVIQSYFDGNLFSNNVWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRYSYFSRAALELLYQSGKKIDIIHCHDWQTAFVAPLYWDIYATRGFSSARICFTCHNFEYQGTAPAPDLSYCGLDVEQLDRPDRMQDNAHGRINVAKGGIVYSNIVTTVSPTYALEVRSEGGRGLQDTLKMHSRKFVGILNGIDTGTWNPSTDRFLAVQYSATDLQGKAANKAFLRKQLGLYSEDASQPLVACITRLVPQKGLHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGVADQFQKNNNIRLILKYDEALSHCIYAACDMFIIPSMFEPCGLTQMIAMRYGSVPIVRQTGGLSDSVFDFDDETIPVELRNGFTFARTDEQDLSSCLERAFSYYSRKPMVWKQLVQKDMQIDFSWDSPASQYENLYRSAVAQARGAAQT", "cigar": "432D3M199DM512D2M16D2M50D2M52D8M75D3MDM84D2M158D2M9D4M54D4M10D2MD3M67DM51D9M55D4MD5M8D5M163D6M2D13M66D8M35D6M356D2M19D5M72D7MD4M452D9MD19M16D9M50D7M2D13MD6MD13M24D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6M3D8M26D9M338D8MD7M7D22M8D22M8D5M53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 4537, "taxon_name": "Oryza punctata", "assembly": "AVCL00000000", "representative": { "id": "OPUNC01G29020", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 453, "end": 691, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 747, "end": 896, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 40, 114, 446, 466, 507, 533, 594, 658, 681, 751, 793, 843, 864, 889 ] }, { "node_id": 4738140, "distance_to_parent": 0.008652, "left_index": 1199, "right_index": 1232, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4738142, "distance_to_parent": 0.00114, "left_index": 1206, "right_index": 1231, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 13, "children": [ { "node_id": 425693, "distance_to_parent": 0.000842, "left_index": 1229, "right_index": 1230, "protein_stable_id": "OGLUM01G33230.1", "gene_stable_id": "OGLUM01G33230", "sequence": "MAACGAAAAEYSALLSLSCGPITRRRFAVSCRGRPPGNLSAQQKKKRGKNIAPKQRSSNAKLLLTTEENGQLPSTSLRTSMERPQKSTSSEDDTNGAISQIDEKIAAIGNEQQERSKDKHFESDFQLEDFGEMIQNMEKNILLLNQARLQAIEDVDKILTEKEALQKKVDTLEMNLSKALATKGNINTDIPGDHLEKFTKEILIESALSGGNPAHLCESPLFMELTVLKEENMLLKADAQFLKAKIVEFAETEEFLFKLEKERSLLDATVRELEARFLVAQTDIWKVVPLQYDVWMEKVENLQHMLGCLKNHVEKYAALLDQHDDLHDKIDELEASLKEGKTSEFSPYVVELLQQKLKAAKSRHQAGHQETNTHIQVYQQLTEEFQDNLGRLIEESGRLEHSANSMPSEFWSHILLMIDGWFLERKIPNTDARMLREMAWKRDDRICEAYFACKGAKESDVMETFLKLTLSGNSSGLHIVHIAAEMAPVAKVGGLADVVAGLGKALQTKGHLVEIVLPKYDCMQLDQITNLKVLDVVIQSYFDGNLFSNNVWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRYSYFSRAALELLYQSGKKIDIIHCHDWQTAFVAPLYWDIYATRGFSSARICFTCHNFEYQGTAPAPDLSYCGLDVEQLDRPDRMQDNAHGRINVAKGGIVYSNIVTTVSPTYALEVRSEGGRGLQDTLKMHSRKFVGILNGIDTGTWNPSTDRFLAVQYSATDLQGKAANKAFLRKQLGLYSEDASQPLVACITRLVPQKGLHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGVADQFQKNNNIRLILKYDEALSHCIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRQTGGLCDSVFDFDDETIPVELRNGFTFARTDEQDLSSCLERAFSYYSRKPMVWKQLVQKDMQIDFSWDSPASQYENLYQSAVAQARGAAQT", "cigar": "432D3M199DM512D2M16D2M50D2M52D8M75D3MDM84D2M158D2M9D4M54D4M10D2MD3M67DM51D9M55D4MD5M8D5M163D6M2D13M66D8M35D6M356D2M19D5M72D7MD4M75D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M50D7M2D13MD6MD13M24D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6M3D8M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 40148, "taxon_name": "Oryza glumipatula", "assembly": "ALNU02000000", "representative": { "id": "OGLUM01G33230", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 478, "end": 716, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 772, "end": 921, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 40, 114, 140, 474, 491, 532, 558, 619, 683, 706, 776, 818, 868, 889, 914 ] }, { "node_id": 4738143, "distance_to_parent": 0, "left_index": 1207, "right_index": 1228, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 6, "children": [ { "node_id": 4738153, "distance_to_parent": 0.001686, "left_index": 1222, "right_index": 1227, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 89, "children": [ { "node_id": 425832, "distance_to_parent": 0, "left_index": 1225, "right_index": 1226, "protein_stable_id": "OBART01G29190.1", "gene_stable_id": "OBART01G29190", "sequence": "MAACGAAAAEYSALLSLSCGPITRRRFAVSCRARPPGNLSAQQKKKRGKNIAPKQRSSNAKLLLTTEENGQLPSTSLRTSMERPQKSTSSEDDTNGAISQIDEKITAIGNEQQERSKDKHFESDFQLEDFGEMIQNMEKNILLLNQARLQAIEDVDKILTEKEALQKKVDTLEMNLSKALATKGNINTDIPGDHLEKFTKEILIESALSGGNPAHLCESPLFMELTVLKEENMLLKADAQFLKAKIVEFAETEEFLFKLEKERSLLDATVRELEARFLVAQTDIWKVVPLQYDVWMEKVENLQHMLGCLKNHVEKYAALLDQHDDLHDKIDELEASLKEGKTSEFSPYVVELLQQKLKAAKSRHQAGHQETNTHIQVYQQLTEEFQDNLGRLTEESGRLEHSANSMPSEFWSHILLMIDGWFLERKIPNTDARMLREMAWKRDDRICEAYFACKGAKESDVMETFLKLMLSGNSSGLHIVHIAAEMAPVAKVGGLADVVAGLGKALQTKGHLVEIVLPKYDCMQLDQITNLKVLDVVIQSYFDGNLFSNNVWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRYSYFSRAALELLYQSGKKIDIIHCHDWQTAFVAPLYWDIYATRGFSSARICFTCHNFEYQGTAPAPDLSYCGLDVEQLDRPDRMQDNAHGRINVAKGGIVYSNIVTTVSPTYALEVRSEGGRGLQDTLKMHSRKFVGILNGIDTGTWNPSTDRFLAVQYSATDLQGKAANKAFLRKQLGLYSEDASQPLVACITRLVPQKGLHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGVADQFQKNNNIRLILKYDEALSHCIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRQTGGLCDSVFDFDDETIPVELRNGFTFARTDEQDLSSCLERAFSYYSRKPMVWKQLVQKDMQIDFSWDSPASQYENLYQSAVAQARGAAQT", "cigar": "432D3M199DM512D2M16D2M50D2M52D8M75D3MDM84D2M158D2M9D4M54D4M10D2MD3M67DM51D9M55D4MD5M8D5M163D6M2D13M66D8M35D6M356D2M19D5M72D7MD4M75D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M50D7M2D13MD6MD13M24D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6M3D8M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 65489, "taxon_name": "Oryza barthii", "assembly": "O.barthii_v1", "representative": { "id": "OBART01G29190", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 478, "end": 716, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 772, "end": 921, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 40, 114, 140, 474, 491, 532, 558, 619, 683, 706, 776, 818, 868, 889, 914 ] }, { "node_id": 425716, "distance_to_parent": 0, "left_index": 1223, "right_index": 1224, "protein_stable_id": "ORGLA01G0239700.1", "gene_stable_id": "ORGLA01G0239700", "gene_description": "starch synthase 4", "sequence": "MAACGAAAAEYSALLSLSCGPITRRRFAVSCRARPPGNLSAQQKKKRGKNIAPKQRSSNAKLLLTTEENGQLPSTSLRTSMERPQKSTSSEDDTNGAISQIDEKITAIGNEQQEVLPYWGGHILISAYQDILLLNQARLQAIEDVDKILTEKEALQKKVDTLEMNLSKALATKGNINTDIPGDHLEKFTKEILIESALSGGNPAHLCESPLFMELTVLKEENMLLKADAQFLKAKIVEFAETEEFLFKLEKERSLLDATVRELEARFLVAQTDIWKVVPLQYDVWMEKVENLQHMLGCLKNHVEKYAALLDQHDDLHDKIDELEASLKEGKTSEFSPYVVELLQQKLKAAKSRHQAGHQETNTHIQVYQQLTEEFQDNLGRLTEESGRLEHSANSMPSEFWSHILLMIDGWFLERKIPNTDARMLREMAWKRDDRICEAYFACKGAKESDVMETFLKLMLSGNSQCSSGLHIVHIAAEMAPVAKVGGLADVVAGLGKALQTKGHLVEIVLPKYDCMQLDQITNLKVLDVVIQSYFDGNLFSNNVWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRYSYFSRAALELLYQSGKKIDIIHCHDWQTAFVAPLYWDIYATRGFSSARICFTCHNFEYQGTAPAPDLSYCGLDVEQLDRPDRMQDNAHGRINVAKGGIVYSNIVTTVSPTYALEVRSEGGRGLQDTLKMHSRKFVGILNGIDTGTWNPSTDRFLAVQYSATDLQGKAANKAFLRKQLGLYSEDASQPLVACITRLVPQKGLHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGVADQFQKNNNIRLILKYDEALSHCIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRQTGGLCDSVFDFDDETIPVELRNGFTFARTDEQDLSSCLERAFSYYSRKPMVWKQLVQKDMQIDFSWDSPASQYENLYQSAVAQARGAAQT", "cigar": "432D3M199DM512D2M16D2M50D2M52D8M75D3MDM84D2M158D2M9D4M54D4M10D2MD3M67DM51D9M55D4MD5M8D5M163D6M2D13M66D8M35D6M356D2M19D5M72D7MD5M35D2M8DM14D10M296DM61DM20D11MD19M16D9M50D7M2D13MD6MD13M24D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6M3D8M26D9M338D8MD7M7D22M8D22M8D5M53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 4538, "taxon_name": "Oryza glaberrima", "assembly": "AGI1.1", "representative": { "id": "ORGLA01G0239700", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 471, "end": 709, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 765, "end": 914, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 40, 130, 464, 484, 525, 551, 612, 676, 699, 769, 811, 861, 882, 907 ] } ], "representative": { "id": "ORGLA01G0239700", "score": -100 } }, { "node_id": 4738144, "distance_to_parent": 0, "left_index": 1208, "right_index": 1221, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 16, "children": [ { "node_id": 4738152, "distance_to_parent": 0.000842, "left_index": 1215, "right_index": 1220, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 77, "children": [ { "node_id": 425920, "distance_to_parent": 0, "left_index": 1218, "right_index": 1219, "protein_stable_id": "OS01T0720600-01", "gene_stable_id": "OS01G0720600", "gene_description": "Glycogen (Starch) synthase-like", "sequence": "MAACGAAAAEYSALLSLSCGPITRRRFAVSCRARPPGNLSAQQKKKRGKNIAPKQRSSNAKLLLTTEENGQLPSTSLRTSMERPQKSTSSEDDTNGAISQIDEKIAAIGNEQQERSKDKHFESDFQLEDFGEMIQNMEKNILLLNQARLQAIEDVDKILTEKEALQKKVDTLEMNLSKALATKGNINTDIPGDHLEKFTKEILIESALSGGNPAHLCESPLFMELTVLKEENMLLKADAQFLKAKIVEFAETEEFLFKLEKERSLLDATVRELEARFLVAQTDIWKVVPLQYDVWMEKVENLQHMLGCLKNHVEKYAALLDQHDDLHDKIDELEASLKEGKTSEFSPYVVELLQQKLKAAKSHHQAGHQETNTHIQVYQQLTEEFQDNLGKLIEESGRLEHSANSMPSEFWSHILLMIDGWFLERKIPNTDARMLREMAWKRDDRICEAYFACKGAKESDVMETFLKLSLSGNSQCSSGLHIVHIAAEMAPVAKVGGLADVVAGLGKALQTKGHLVEIVLPKYDCMQLDQITNLKVLDVVIQSYFDGNLFSNNVWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRYSYFSRAALELLYQSGKKIDIIHCHDWQTAFVAPLYWDIYATRGFSSARICFTCHNFEYQGTAPAPDLSYCGLDVEQLDRPDRMQDNAHGRINVAKGGIVYSNIVTTVSPTYALEVRSEGGRGLQDTLKMHSRKFVGILNGIDTGTWNPSTDRFLAVQYSATDLQGKAANKAFLRKQLGLYSEDASQPLVACITRLVPQKGLHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGVADQFQKNNNIRLILKYDEALSHCIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRQTGGLCDSVFDFDDETIPVELRNGFTFARTDEQDLSSCLERAFSYYSRKPMVWKQLVQKDMQIDFSWDSPASQYENLYQSAVAQARGAAQT", "cigar": "432D3M199DM512D2M16D2M50D2M52D8M75D3MDM84D2M158D2M9D4M54D4M10D2MD3M67DM51D9M55D4MD5M8D5M163D6M2D13M66D8M35D6M356D2M19D5M72D7MD4M75D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M50D7M2D13MD6MD13M24D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6M3D8M26D9M338D8MD7M7D22M8D22M8D5M53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 39947, "taxon_name": "Oryza sativa Japonica Group", "assembly": "IRGSP-1.0", "representative": { "id": "OS01G0720600", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 481, "end": 719, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 775, "end": 924, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 40, 114, 140, 474, 494, 535, 561, 622, 686, 709, 779, 821, 871, 892, 917 ] }, { "node_id": 425896, "distance_to_parent": 0, "left_index": 1216, "right_index": 1217, "protein_stable_id": "ORUFI01G32260.2", "gene_stable_id": "ORUFI01G32260", "sequence": "MAACGAAAAEYSALLSLSCGPITRRRFAVSCRARPPGNLSAQQKKKRGKNIAPKQRSSNAKLLLTTEENGQLPSTSLRTSMERPQKSTSSEDDTNGAISQIDEKIAAIGNEQQERSKDKHFESDFQLEDFGEMIQNMEKNILLLNQARLQAIEDVDKILTEKEALQKKVDTLEMNLSKALATKGNINTDIPGDHLEKFTKEILIESALSGGNPAHLCESPLFMELTVLKEENMLLKADAQFLKAKIVEFAETEEFLFKLEKERSLLDATVRELEARFLVAQTDIWKVVPLQYDVWMEKVENLQHMLGCLKNHVEKYAALLDQHDDLHDKIDELEASLKEGKTSEFSPYVVELLQQKLKAAKSRHQAGHQETNTHIQVYQQLTEEFQDNLGKLIEESGRLEHSANSMPSEFWSHILLMIDGWFLERKIPNTDARMLREMAWKRDDRICEAYFACKGAKESDVMETFLKLSLSGNSSGLHIVHIAAEMAPVAKVGGLADVVAGLGKALQTKGHLVEIVLPKYDCMQLDQITNLKVLDVVIQSYFDGNLFSNNVWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRYSYFSRAALELLYQSGKKIDIIHCHDWQTAFVAPLYWDIYATRGFSSARICFTCHNFEYQGTAPAPDLSYCGLDVEQLDRPDRMQDNAHGRINVAKGGIVYSNIVTTVSPTYALEVRSEGGRGLQDTLKMHSRKFVGILNGIDTGTWNPSTDRFLAVQYSATDLQGKAANKAFLRKQLGLYSEDASQPLVACITRLVPQKGLHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGVADQFQKNNNIRLILKYDEALSHCIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRQTGGLCDSVFDFDDETIPVELRNGFTFARTDEQDLSSCLERAFSYYSRKPMVWKQLVQKDMQIDFSWDSPASQYENLYQSAVAQARGAAQT", "cigar": "432D3M199DM512D2M16D2M50D2M52D8M75D3MDM84D2M158D2M9D4M54D4M10D2MD3M67DM51D9M55D4MD5M8D5M163D6M2D13M66D8M35D6M356D2M19D5M72D7MD4M75D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M50D7M2D13MD6MD13M24D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6M3D8M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 4529, "taxon_name": "Oryza rufipogon", "assembly": "OR_W1943", "representative": { "id": "ORUFI01G32260", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 478, "end": 716, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 772, "end": 921, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 40, 114, 140, 474, 491, 532, 558, 619, 683, 706, 776, 818, 868, 889, 914 ] } ], "representative": { "id": "OS01G0720600", "score": -100 } }, { "node_id": 4738147, "distance_to_parent": 0, "left_index": 1209, "right_index": 1214, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 31, "children": [ { "node_id": 425671, "distance_to_parent": 0, "left_index": 1212, "right_index": 1213, "protein_stable_id": "BGIOSGA000900-PA", "gene_stable_id": "BGIOSGA000900", "gene_description": "Putative uncharacterized protein", "sequence": "MAACGAAAAEYSALLSLSCGPITRRRFAVSCRARPPGNLSAQQKKKRGKNIAPKQRSSNELLLTTEENGQLPSTSLRTSMERPQKSTSNIPGDHLEKFTKEILIESALSGGNPAHLCESPLFMELTVLKEENMLLKADAQFLKAKIVEFAETEEFLFKLEKERSLLDATVRELEARFLVAQTDIWKVVPLQYDVWMEKVENLQHMLGCLKNHVEKYAALLDQHDDLHDKIDELEASLKEGKTSEFSPYVVELLQQKLKAAKSRHQAGHQETNTHIQVYQQLTEEFQDNLGKLIEESGRLEHSANSMPSEFWSHILLMIDGWFLERKIPNTDARMLREMAWKRDDRICEAYFACKGAKESDVMETFLKLTLSGNSQCSSGLHIVHIAAEMAPVAKVGGLADVVAGLGKALQTKGHLVEIVLPKYDCMQLDQITNLKVLDVVIQSYFDGNLFSNNVWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRYSYFSRAALELLYQSGKKIDIIHCHDWQTAFVLDRPDRMQDNAHGRINVAKGGIVYSNIVTTVSPTYALEVRSEGGRGLQDTLKMHSRKFVGILNGIDTGTWNPSTDRFLAVQYSATDLQGKAANKAFLRKQLGLYSEDASQPLVACITRLVPQKGLHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGVADQFQKNNNIRLILKYDEALSHCIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRQTGGLCDSVFDFDDETIPVELRNGFTFARTDEQDLSSCLERAFSYYSRKPMVWKQLVQKDMQIDFSWDSPASQYENLYQSAVAQARGAAQT", "cigar": "432D3M199DM512D2M16D2M50D2M52D8M75D3MDM84D2M158D2M9D4M54D4M10D2MD3M67DM51D9M55D4MD5M8DMD3M163D6M2D13M66D7M1075D11MD6MD13M24D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6M3D8M26D9M338D8MD7M7D22M8D22M8D5M53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D9M137D9MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 39946, "taxon_name": "Oryza sativa Indica Group", "assembly": "ASM465v1", "representative": { "id": "BGIOSGA000900", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 381, "end": 522, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 630, "end": 779, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 40, 89, 374, 394, 435, 461, 522, 541, 564, 634, 676, 726, 747, 772 ] }, { "node_id": 425822, "distance_to_parent": 0, "left_index": 1210, "right_index": 1211, "protein_stable_id": "ONIVA01G33370.3", "gene_stable_id": "ONIVA01G33370", "sequence": "MAACGAAAAEYSALLSLSCGPITRRRFAVSCRARPPGNLSAQQKKKRGKNIAPKQRSSNELLLTTEENGQLPSTSLRTSMERPQKSTSSEDDTNGAISQIDEKIAAIGNEQQEVLPYWGGHILISAYQGILRSKDKHFESDFQLEDFGEMIQNMEKNILLLNQARLQAIEDVDKILTEKEALQKKVDTLEMNLSKALATKGNINTDIPGDHLEKFTKEILIESALSGGNPAHLCESPLFMELTVLKEENMLLKADAQFLKAKIVEFAETEEFLFKLEKERSLLDATVRELEARFLVAQTDIWKVVPLQYDVWMEKVENLQHMLGCLKNHVEKYAALLDQHDDLHDKIDELEASLKEGKTSEFSPYVVELLQQKLKAAKSRHQAGHQETNTHIQVYQQLTEEFQDNLGKLIEESGRLEHSANSMPSEFWSHILLMIDGWFLERKIPNTDARMLREMAWKRDDRICEAYFACKGAKESDVMETFLKLTLSGNSSGLHIVHIAAEMAPVAKVGGLADVVAGLGKALQTKGHLVEIVLPKYDCMQLDQITNLKVLDVVIQSYFDGNLFSNNVWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRYSYFSRAALELLYQSGKKIDIIHCHDWQTAFVAPLYWDIYATRGFSSARICFTCHNFEYQGTAPAPDLSYCGLDVEQLDRPDRMQDNAHGRINVAKGGIVYSNIVTTVSPTYALEVRSEGGRGLQDTLKMHSRKFVGILNGIDTGTWNPSTDRFLAVQYSATDLQGKAANKAFLRKQLGLYSEDASQPLVACITRLVPQKGLHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGVADQFQKNNNIRLILKYDEALSHCIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRQTGGLCDSVFDFDDETIPVELRNGFTFARTDEQDLSSCLERAFSYYSRKPMVWKQLVQKDMQIDFSWDSPASQYENLYQSAVAQARGAAQT", "cigar": "432D3M199DM512D2M16D2M50D2M52D8M75D3MDM84D2M158D2M9D4M54D4M10D2MD3M67DM51D9M55D4MD5M8DMD3M163D6M2D13M66D8M35D6M356D2M19D5M72D7MD5M35D2M8DM14D20MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M50D7M2D13MD6MD13M24D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6M3D8M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 4536, "taxon_name": "Oryza nivara", "assembly": "AWHD00000000", "representative": { "id": "ONIVA01G33370", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 495, "end": 733, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 789, "end": 938, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 40, 131, 157, 491, 508, 549, 575, 636, 700, 723, 793, 835, 885, 906, 931 ] } ], "representative": { "id": "BGIOSGA000900", "score": 0 } } ], "representative": { "id": "OS01G0720600", "score": -99.999158 } } ], "representative": { "id": "OS01G0720600", "score": -99.999158 } } ], "representative": { "id": "OS01G0720600", "score": -99.999158 } }, { "node_id": 4738141, "distance_to_parent": 0.001099, "left_index": 1200, "right_index": 1205, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 1, "children": [ { "node_id": 426039, "distance_to_parent": 0.068731, "left_index": 1203, "right_index": 1204, "protein_stable_id": "KN538890.1_FGP010", "gene_stable_id": "KN538890.1_FG010", "sequence": "MSCSDAVVRPLLDEGGVVHGFTRHVIALLPAEQPRRIPHRRGPRRHVDEHQRPGPDLGPGADPDIAEDRRAGANEDAVADLGVPVAHGLAGPAQRDVVEDGDVVADDGGLSDDDAGGVVEEDALADRGGGVDVDGEHLGDAGLEREREGAAVLRPEHVRDALGLDGEEALVVEEAVGEADAGGVPGARGEEVGDDGGAEGGVRGEGGDEEVVEERGEQRGGAELVGEVEGEGAVEGGVGEHGGVEERRERRLGVGVAARLGLDLGPDPRLVGVRLRGRLLCGSAQQKKKRGKNIAPKQLSSNAKLLLTTEENGQLPSTSLRTSMQPPQKSTSSEDDTNGAISQRDEKLAAIGNEQQERSKDKHFESGFQLEDFGKMIQNMEKNILLLNQARLQAIEDVDKILTEKEALQKKVDILEMKLSKALSTKGNINTDIPGDHLEKFTKEILIESALSGGNPAHLCESPLFMELTILKEENMLLKADAQFLKAKIVEFAETEEFLFKLEKERSLLDATVRELEARFLVAQTDIWKVVPLQYDVWMEKVENLQHMLGCLKNHVEKYAALLEQHDDLHDKIDELEASLKEGKTSEFSPYVVELLQQKLKAVKSRHQAGHQETNTHIQVYQQLTEEFQDNLGRLIEESGRLEHSANSMPSEFWSHILLMIDGWFLERKIPNTDARMLREMAWKRDDRICEAYFACKGAKESDVMETFLKLTLSGNSQCSSGLHIVHIAAEMAPVAKVGGLADVVAGLGKALQTKGHLVEIVLPKYDCMQLDQITNLKVLDVVIQSYFDGNLFSNNVWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRYSYFSRAALELLYQSGKKIDIIHCHDWQTAFVFWVSTILYRVQEYCILHLDCRHLYIGIYMQLEASAQLEFVSLATTSNTKLDRPDRMQDNAHGRINVAKGGIVYSNIVTTVSPTYALEVRSEGGRGLQDTLKMHSRKFVGILNGIDIGTWNPSTDRFLSVQYSATDLQGKAANKAFLRKQLGLYSEDASQPLVACITRLVPQKGLHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGVADQFQKNNNIRLILKYDEALSHCIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRQTGGLCDSVFDFDDETIPVELRNGFTFARTDEQDLSSCLERAFSYYSRKPMVWKQLVQKDMQIDFSWDSPASQYENLYQSAVAQARGAAQT", "cigar": "433D2M199D5M7D3M36D14M23D13M28D11M30D5M60DM272D8M7D10M50D2M52D10M29DM2D4M37D3MDM84D148M4D10M9D4M54D9M4D3MD8M22D6M33D2M51D9M55D4MD5M8D5M163D6M2D13M66D8M35D6M356D2M19D5M72D7MD4M75D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M50D7M2D13MD6MD13M24D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6M3D8M26D9M338D8MD7M7D22M8D22M8D5M53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D9M3D2M5DM3D2MD23M68D17M8D13MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 4528, "taxon_name": "Oryza longistaminata", "assembly": "O_longistaminata_v1.0", "representative": { "id": "KN538890.1_FG010", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 724, "end": 966, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 1022, "end": 1171, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 278, 357, 383, 717, 737, 778, 804, 865, 914, 933, 956, 1026, 1068, 1118, 1139, 1164 ] }, { "node_id": 426004, "distance_to_parent": 0.009945, "left_index": 1201, "right_index": 1202, "protein_stable_id": "OMERI01G26980.1", "gene_stable_id": "OMERI01G26980", "gene_display_label": "OMERI01G26980", "sequence": "MAACGAAAAEYSALLSLPCGPITRRRFAVSCRARPPGNLSAQQKKKRGKNIAPKQLSSNAKLLLTTEENGQLPSTSLRTSMQPPQKSTSSEDDTNGAISQRDEKIAAIGNEQQERSKDKHFESDFQLEDFGEMIQNMEKNILLLNQARLQAIEDVDKILTEKEALQKKVDILETKLSKALATKGNINTDIPGDHLEKFTKEILIESALSGGNPAHLCESPLFMELTVLKEENMLLKADTQFLKAKIVEFAETEEFLFKLEKERSLLDATVRELEARFLVAQTDIWKVVPLQYDVWMEKVQNLQHMLGCLKNHVEKYAALLDRHDDLHDKIDELEASLKEGKTSEFSPYVVELLQQKLKAAKSRHQAGHQETNTHIQVYQQLTEEFQDNLGRLIEESGRLEHSANSMPSEFWSHILLMIDGWFLERKIPNTDARMLREMAWKRDDRICEAYFACKGAKESDVMETFLKLTKQVGGLADVVTGLGKALQTKGHLVEIVLPKYDCMQLDQITNLKVLDVVIQSYFDGNLFSNNVWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKCYSYFSRAALELLYQSGKKIDIIHCHDWQTAFVAPLYWDIYATRGFSSARICFTCHNFEYQGTAPAPDLSYCGLDVEQLDRPDRMQDNAHGRINVAKGGIVYSNIVTTVSPTYALEVRSEGGRGLQDTLKMHSRKFVGILNGIDTGTWNPSTDRFLAVQYSATDLQGKAANKAFLRKQLGLYSEDASQPLVACITRLVPQKGLHLIRHAIYKTAELEGQFVLLGSSPVPHIQREFEGVADQFQKNNNIRLILKYDEALSHCIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRQTGGLCDSVFDFDDETIPVELRNGFTFARTDEQDLSSCLERAFSYYSRKPMVWKQLVQKDMQIDFSWDSPASQYENLYQSAVAQARGAAQT", "cigar": "432D3M199DM512D2M16D2M50D2M52D8M75D3MDM84D2M158D2M9D4M54D4M10D2MD3M67DM51D9M55D4MD5M8D5M163D6M2D13M66D8M35D6M356D2M19D5M72D7MD4M75D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M50D7M2D13MD6MD13M24D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6M3D8M26D9M338D8MD7M7D22M8D19M111DM4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 40149, "taxon_name": "Oryza meridionalis", "assembly": "Oryza_meridionalis_v1.3", "representative": { "id": "OMERI01G26980", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 471, "end": 696, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 752, "end": 901, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 40, 114, 140, 469, 471, 512, 538, 599, 663, 686, 756, 798, 848, 869, 894 ] } ], "representative": { "id": "OMERI01G26980", "score": 0.009945 } } ], "representative": { "id": "OS01G0720600", "score": -99.99801799999999 } } ], "representative": { "id": "OS01G0720600", "score": -99.98936599999999 } } ], "representative": { "id": "OS01G0720600", "score": -99.97721099999998 } } ], "representative": { "id": "OS01G0720600", "score": -99.97326799999998 } }, { "node_id": 4738082, "distance_to_parent": 0.027639, "left_index": 1118, "right_index": 1195, "taxon_id": 4479, "taxon_name": "Poaceae", "node_type": "speciation", "bootstrap": 97, "children": [ { "node_id": 4738083, "distance_to_parent": 0.053813, "left_index": 1185, "right_index": 1194, "taxon_id": 147369, "taxon_name": "Panicoideae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425801, "distance_to_parent": 0.02611, "left_index": 1192, "right_index": 1193, "protein_stable_id": "Si021148m", "gene_stable_id": "Si021148m.g", "gene_description": "starch synthase 4", "sequence": "MACSAAAAGAEATALLFRGPAPSSIAGRSRLAVSRRTRHRNLRTGAQPPQKSTPSANYRNRVNIQRDRAGASSDDEHQQNSDDENGLPNVQLEDLVGMIQNTEKNILLLNQARLQALERADKILKEKEALQRKMSILEIKLSETGAQSELSSEGKSDTEAQEFDVLKEENMLLKDDINFLKSKLIEITETEESLFKLEKERAILDASLRELECAFIAAQSDMLKLGPMQHDAWWEKVENLEELLESTANQVEHAALILDGYHDFQEKIDKLEASLGATKISEFCLYFVDLLKKRVKSVEERFQACNHEMHSQIELYEHSIVEFHDTLSKLIKESEKKSMEHYAEGMPSEFWSRISLLIDGWSLEKKISSNDANILREMAWTRDNRLREAYLSSRGMAERELIDSFLKMALPGTSSGLHIVHIAAEMAPVAKVGGLADVISGLGKALQKKGHLVEIILPKYDCMQHNQINNLKVLDVVVQSYFEGNTFANKIWTGTVEGLPVYFIEPQHPGKFFWRAQYYGEHDDFKRFSYFSRVALELLYQSGKKVDIIHCHDWQTAFVAPLYWDVYANLGFNSARICFTCHNFEYQGTAPAQDLAYCGLDVEHLDRPDRMRDNSHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKIHSKKFVGILNGIDTDTWNPSTDRFLKVQYSANDLYGKSANKASLRKQLKMSSANASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPNIQREFEGIADQFQNNNNIRLLLKYDDALSHMIFAASDMFIVPSMFEPCGLTQMIAMRYGSVPVVRKTGGLNDSVFDFDDETIPMELRNGFTFLKADEQGFDSALERAFNYYHRKPEVWKQLVQKDMKIDFSWDTSASQYEDIYQRAAARARAAA", "cigar": "432D2M200DM55D2M452D5M16D2M105D5M2D2M73D3MDM51D2M30D3M158D2M9D4M54D4M11DMD3M119D4MD4M55D4MD4M9D5M163D6M11D4M109D6M541D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D3M58D14MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D3M352D", "taxon_id": 4555, "taxon_name": "Setaria italica", "assembly": "JGIv2.0", "representative": { "id": "Si021148m.g", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 418, "end": 656, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 708, "end": 834, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 43, 79, 105, 414, 431, 472, 498, 559, 623, 646, 716, 758, 808, 829, 854 ] }, { "node_id": 4738085, "distance_to_parent": 0.030277, "left_index": 1186, "right_index": 1191, "taxon_id": 147429, "taxon_name": "Andropogoneae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 426036, "distance_to_parent": 0.037265, "left_index": 1189, "right_index": 1190, "protein_stable_id": "Zm00001d010821_P002", "gene_stable_id": "Zm00001d010821", "gene_description": "", "sequence": "MSCSAAAGAEATALLFRSAAPSTIVGRHRLAMSRRTSRRNLRTGVHPHQKSAPSANHRNRASIQRDRASASIDEEQKQMSEDENGLLDIQLEDLVGMIQNTQKNILLLNQARLQALERADKILKEKETLQQKINILEMKLSETGKQSVLSSEVKSDEESLEFDVVKEENMLLKDEMNFLKGKLIEITETEESLFKLEKECALLNASLRELECTSTSAQSDVLKLGPLQQDAWWEKVENLEDLLDSTANQVEHASLTLDGYRDFQDKVDKLKASLGTTNVSEFCLYLVDILQQRVKSVEERFQACNHEMHSQIELYEHSIVEFHGTLSKLINESEKKSMEHYAEGMPSEFWSRISLLIDGWSLEKKISINDASMLREMAWKRDNRLREAYLSSRGMEERELIDSFLKMALPGTSSGLHIVHIAAEMAPVAKVGGLADVISGLGKALQKKGHLVEIILPKYDCMQHNQINNLKVLDVVVKSYFEGNMFANKIWTGTVEGLPVYFIEPQHPGKFFWRAQYYGEHDDFKRFSYFSRVALELLYQSGKKVDIIHCHDWQTAFVAPLYWDVYANLGFNSARICFTCHNFEYQGIAPAQDLAYCGLDVDHLDRPDRMRDNSHGRINVVKGAVVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKVHSKKFVGILNGIDTDTWNPSTDRFLKVQYSANDLYGKSANKAALRKQLKLASTQASQPLVGCITRLVPQKGVHLIRHAIYKITELGGQFVLLGSSPVQHIQREFEGIADQFQNNNNVRLLLKYDDALAHMIFAASDMFIVPSMFEPCGLTQMVAMRYGSVPVVRRTGGLNDSVFDLDDETIPMEVRNGFTFLKADEQDFGNALERAFNYYHRKPEVWKQLVQKDMKIDFSWDTSVSQYEEIYQKTATRARAAA", "cigar": "432D2M200DM55DM453D5M16D2M105D5M2D2M73D3MDM51D2M30D3M158D2M9D4M54D4M11DMD3M119D4MD4M55D4MD4M9D5M163D6M11D4M109D6M541D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D3M58D14MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D3M352D", "taxon_id": 4577, "taxon_name": "Zea mays", "assembly": "AGPv4", "representative": { "id": "Zm00001d010821", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 417, "end": 655, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 712, "end": 862, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 42, 78, 104, 413, 430, 471, 497, 558, 622, 645, 715, 757, 807, 828, 853 ] }, { "node_id": 425690, "distance_to_parent": 0.019166, "left_index": 1187, "right_index": 1188, "protein_stable_id": "EES18558", "gene_stable_id": "SORBI_009G209300", "gene_description": "hypothetical protein", "sequence": 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"432D2M200DM55DM453D5M16D2M105D5M2D2M73D3MDM51D2M30D3M158D2M9D4M54D4M11DMD3M119D4MD4M55D4MD4M9D5M163D6M11D4M109D6M541D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D3M58D14MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D3M352D", "taxon_id": 4558, "taxon_name": "Sorghum bicolor", "assembly": "Sorghum_bicolor_v2", "representative": { "id": "SORBI_009G209300", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 417, "end": 655, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 712, "end": 833, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 42, 78, 104, 413, 430, 471, 497, 558, 622, 645, 715, 757, 807, 828, 853 ] } ], "representative": { "id": "SORBI_009G209300", "score": 0.019166 } } ], "representative": { "id": "Si021148m.g", "score": -99.97389 } }, { "node_id": 4738089, "distance_to_parent": 0.015001, "left_index": 1119, "right_index": 1184, "taxon_id": 359160, "taxon_name": "BEP clade", "node_type": "speciation", "bootstrap": 99, "children": [ { "node_id": 4738126, "distance_to_parent": 0.045569, "left_index": 1158, "right_index": 1183, "taxon_id": 147368, "taxon_name": "Pooideae", "node_type": "speciation", "bootstrap": 99, "children": [ { "node_id": 425783, "distance_to_parent": 0.036449, "left_index": 1181, "right_index": 1182, "protein_stable_id": "BRADI2G18810.1", "gene_stable_id": "BRADI2G18810", "gene_description": "starch synthase 4", "sequence": "MACASAAGVEATALLLPRARLAAASPVAAGHRLSLTPRRTRQRTSLRTAAQRPQKSTTGADPLNGANNVQREEAAVSTDKERQKKYDDGDGISNLQLEDLVGMIQNTEKNILLLNQARLQALEHADKILKEKEALQRKITILETRLSETDAQLKLSAEGNFDTEINDSPLVLEFDVLKEENMLLKEDIEFLKTKLIEVAETEESILKLEKERALLDASLRELESRFIAAQADTLKLGPRKYDTWWDKVEKLEDLLENTANQVEHAAMILDHNHDLQDKLDKLQASLRAATISKFSCDLVDLLQQKVKSVEERFQACNHEMHSQIELYEHSIVEFHETLSKLIEESEKRSLENFTGNMPSELWSRISLLIDGWLLEKKISYNDANMLREMAWKRDSRLREAYLSCRGTENGEVMDKFIKMALPGTSSGLHIAHIAAEMAPVAKVGGLADVISGLAKALQKKGHLVEIILPKYDCMQLDQVNNLKALDVLLQSYFEGSMFNNKIWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKVDIIHCHDWQTAFVAPLYWDVYANLGFNSARICFTCHNFEYQGTAPARDLAWCGLDVEHLDRPDRMRDNSHGRINVVKGAIVYSNIVTTVSPTYALEVRSEGGRGLQDTLKVHSRKFLGILNGIDTDTWNPSTDRYLKVQYNANDLQGKAANKAALRKQLNLASAYPSQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQKEFEGIADHFQNNNNIRLILKYDDALSHCIYAASDMFIVPSIFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPIEVRNGFTFVKADEQGLSSAMERAFNCYTRKPEVWKQLVQKDMMIDFSWDTSASQYEDIYQRAAARARAAA", "cigar": "432D2M200DM55D2M453D4M16D2M105D5MD4M71D4MDM51D2M30D3M158D2MD2M7D3M54D4M11DMD4M118D4MD4M55D4MD5M8D5M163D6M11D4M109D6M541D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D6M52D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D3M352D", "taxon_id": 15368, "taxon_name": "Brachypodium distachyon", "assembly": "v1.0", "representative": { "id": "BRADI2G18810", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 429, "end": 667, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 724, "end": 881, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 47, 84, 110, 425, 442, 483, 509, 570, 634, 657, 727, 769, 819, 840, 865 ] }, { "node_id": 4738129, "distance_to_parent": 0.038395, "left_index": 1159, "right_index": 1180, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 59, "children": [ { "node_id": 425778, "distance_to_parent": 0.026187, "left_index": 1178, "right_index": 1179, "protein_stable_id": "MLOC_43814.2", "gene_stable_id": "MLOC_43814", "gene_description": "Uncharacterized protein", "sequence": "MACSAAEATTALLPPRCPAPSPLDGRRLSLPCRARHRTLTLRAAAQQRPQRSTAGADHLNTAANVRSDEAAVSAEKERQRKYSDGDGISNLQLEDLVEMIQNTEKNILLLNQARLQAMERADKILKEKEALQRKISILETRLSETDAQHKLSSEGNFSESPLALEFDVLKEENILLKEDIEFFKSKLIEVAKTEEGIFKLEKERALLDASLRELESRFIAAQADMMKLGPRDAWWEKVEKLEDLLETTANQVERAAVILDNNHDLQDKLDKLVASLQAANISKFSSSLVDLLQQKVKLVEERFQACNREMHSQIKLYEHSIVEFHDTLSKLIEESEKRSLENFTGNMPSELWSKISLLIDGWLLEKKISYNDASLLREMVRKRDSRLREAYLSYRGTENREVMDNFLKMALPGTSSGLHIAHIAAEMAPVAKVGGLADVISGLGKALQKKGHLVEIILPKYDCMQVDQVSNLKVLDVPVQSYFEGNMFDNKIWTGTVEGLPVYFIEPQHPAMFFSRAQYYGEHDDFKRFTYFSRAALELLYQSGKKVDIIHCHDWQTAFVAPLYWDVYANLGFNSARICFTCHNFEYQGTAPARDLAWCGLDVEHLDRPDRMRDNSHGRINAVKGAVVYSNIVTTVSPTYALEVLSQV", "cigar": "432D2M200DM55D2M456DM16D2M104D6MD3M73D3MDM51D2M30D3M158DM10D4M54D4M11DMD5M117D9M55D4MD5M8D5M163D6M11D4M109D6M541D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D11M6D3M52D17MDM45D4M12D18M8D2M9D3MD4MD13M58D10M4D12M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D14M564DM17D3M2422D", "taxon_id": 112509, "taxon_name": "Hordeum vulgare subsp. vulgare", "assembly": "ASM32608v1", "representative": { "id": "MLOC_43814", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 419, "end": 647, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 42, 80, 106, 415, 432, 473, 499, 560, 624 ] }, { "node_id": 4738132, "distance_to_parent": 0.001183, "left_index": 1160, "right_index": 1177, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 58, "children": [ { "node_id": 4738133, "distance_to_parent": 0.014167, "left_index": 1171, "right_index": 1176, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 98, "children": [ { "node_id": 425859, "distance_to_parent": 0.001685, "left_index": 1174, "right_index": 1175, "protein_stable_id": "TRIAE_CS42_1DL_TGACv1_062182_AA0210070.2", "gene_stable_id": "TRIAE_CS42_1DL_TGACv1_062182_AA0210070", "gene_description": "Probable starch synthase 4, chloroplastic/amyloplastic", "sequence": "MACSAAAGVEATALLSPRCPAPSPPDGRSRRRLALASRTRHRSLRAAAQRPHKSTTGADPLNNRANPRSDEAAVSAEKERQRKYNDGDGISNLQLEDLVGLIQNTEKNILLLNQARLQAMEHADKILKEKEALQRKINILETRLSETNAQHKLSSEGNVSDSPLLLEFDVLKEDNILLKEDIEFFKTKLIEIAETEEGIFKLEKERALLDASLRELESRFIAAQANMMKLGPRDAWWEKVEKLEDLLETTANQVEHAAVILDHNHDLQDRLDNLEASLQAANISKFSCSLVDLLQQKVKLVEDRFQACNSEMHSQIELYEHSIVEFHDTLSKLIEESEKRSLENFTGNMPSELWSKISLLIDGWLLEKKIAYNDASMLREMVRKRDSRLREAYLSYRGTENRDVMDSFLKMALPGTSSGLHIAHIAAEMAPVAKVGGLADVISGLGKALQKKGHLVEIILPKYDCMQVDQVSNLKVLDVLVQSYFEGNMFNNKIWTGTVEGLPVYFIEPQHPAMFFSRAQYYGEHDDFKRFTYFSRAALELLYQSGKKVDIIHCHDWQTAFVAPLYWDVYANLGFNSARICFTCHNFEYQGTAPARDLAWCGLDVEHLDRPDRMRDNSHGRINAVKGAIVYSNIVTTVSPTYALEVRSEGGRGLQDTLKVHSRKFLGILNGIDTDTWNPSTDRYLKVQYNAKDLQGKAANKAALREQLNLASAYPSQPLVGCITRLVAQKGVHLIRHAIYKTAELGGQFVLLGSSPVPEIQREFEGIADHFQNNNNIRLILKYDDALSHCIYAASDMFIVPSIFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPMEVRNGFTFVKADEQGLSSAMERAFNCYTRKPEVWKQLVQKDMTIDFSWDTSASQYEDIYQKAVARARAVA", "cigar": "432D2M200DM55D2M453D4M16D2M105D5MD3M73D3MDM51D2M30D3M158D2MD2M6D4M54D4M11DMD3M119D4MD4M55D4MD5M8D5M163D6M11D4M109D6M541D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D11M6D3M52D17MDM45D4M12D18M8D2M9D3MD4MD13M58D10M4D12M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D3M352D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_1DL_TGACv1_062182_AA0210070", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 421, "end": 659, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 716, "end": 873, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 45, 82, 108, 417, 434, 475, 501, 562, 626, 649, 719, 761, 811, 832, 857 ] }, { "node_id": 425773, "distance_to_parent": 0, "left_index": 1172, "right_index": 1173, "protein_stable_id": "EMT22701", "gene_stable_id": "F775_21340", "gene_description": "Glycogen synthase", "sequence": "MACSAAAGVDGDGPPVPPLPRPSRPTAAPAAASPSPPGRATAASGDIVVSSTMVRSIVYMPLAFLMSGFCEAAAQRPHKSTTGADPLNNRANPRSDEAAVSAEKERQRQRSSSLSARSIRLRGYLKYNDGDGISNLQLEDLVGLIQNTEKNILLLNQARLQAMEHADKILKEKEALQRKINILETRLSETNAQHKLSSEGNVSDSPLLLEFDVLKEDNILLKEDIEFFKTKLIEIAETEEGIFKLEKERALLDASLRELESRFIAAQANMMKLGPRDAWWEKVEKLEDLLETTANQVEHAAVILDHNHDLQDRLDNLEASLQAANISKFSCSLVDLLQQKVKLVEDRFQACNSEMHSQIELYEHSIVEFHDTLSKLIEESEKRSLENFTGNMPSELWSKISLLIDGWLLEKKIAYNDASMLREMVRKRDSRLREAYLSYRGTENRDVMDSFLKMALPGTSSGLHIAHIAAEMAPVAKVGGLADVISGLGKALQKKGHLVEIILPKYDCMQVDQVSNLKVLDVLVQSYFEGNMFNNKIWTGTVEGLPVYFIEPQHPAMFFSRAQYYGEHDDFKRFAYFSRAALELLYQSGKKVDIIHCHDWQTAFVAPLYWDVYANLGFNSARICFTCHNFEYQGTAPARDLAWCGLDVEHLDRPDRMRDNSHGRINAVKGAIVYSNIVTTVSPTYALEVRSEGGRGLQDTLKVHSRKFLGILNGIDTDTWNPSTDRYLKVQYNAKDLQGKAANKAALREQLNLASAYPSQPLVGCITRLVAQKGVHLIRHAIYKTAELGGQFVLLGSSPVPEIQREFEGIADHFQNNNNIRLILKYDDALSHCIYAASDMFIVPSIFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPMEVRNGFTFVKADEQGLSSAMERAFNCYTRKPEVWKQLVQKDMTIDFSWDTSASQYEDIYQKAVARARAVA", "cigar": "432D2M200DM55D2M453D4M16D11M29D2M10D2M52D4M3D3M73D3MDM51D2M31D2M158D2MD2M4D6M54D4M11DMD8M22D4M36D3M48D5MD4M55D4MD5M8D5M163D6M11D4M109D6M453D8M70D5MD10MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D11M6D3M52D17MDM45D4M12D18M8D2M9D3MD4MD13M58D10M4D12M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D3M352D", "taxon_id": 37682, "taxon_name": "Aegilops tauschii", "assembly": "ASM34733v1", "representative": { "id": "F775_21340", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 464, "end": 702, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 759, "end": 916, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 45, 71, 108, 110, 125, 151, 460, 477, 518, 544, 605, 669, 692, 762, 804, 854, 875, 900 ] } ], "representative": { "id": "F775_21340", "score": -100 } }, { "node_id": 4738134, "distance_to_parent": 0.008133, "left_index": 1161, "right_index": 1170, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 98, "children": [ { "node_id": 425888, "distance_to_parent": 0.007532, "left_index": 1168, "right_index": 1169, "protein_stable_id": "TRIAE_CS42_1BL_TGACv1_031136_AA0108420.1", "gene_stable_id": "TRIAE_CS42_1BL_TGACv1_031136_AA0108420", "gene_description": "Probable starch synthase 4, chloroplastic/amyloplastic", "sequence": "MACSAAAGVEATALLSPRCPAPSPPDGRSRRRLALASRTRHRSLRAAAQRPHKSTTGADPLNNRANVRSDEAAVSAEKERQRKYNDGDGISNLQLEDLVGMIQNTEKNILLLNQARLQAMEHADKILKEKEALQRKINILETRLSEIDSQHKLSSEGNFSDSPLALEFDVLKEENIVLKEDIEFFKTKLIEVAETEEGIFKLEKERALLDASLRELESRFIAAQANMMKLGPRDAWWEKVEKLEDLLETTANQVEHAAVILDRNHDLQDRLEKLEASLQAANISKFSCSLVDLLQQKVKLVEERFQACNREMHSQIELYEHSIVEFHDTLSKLIEESEKRSLENFTGNMPSELWSKISLLTDGWLLEKKISYSDASMLREMVQKRDNRLREAYLSYRGTENREVMDNLLKMALPGTSSGLHIAHIAAEMAPVAKVGGLADVISGLGKALQKKGHLVEIILPKYDCMQVDQVSNLRVLDVLVQSYFEGNMFNNKIWTGTVEGLPVYFIEPQHPAMFFSRAHYYGEHDDFKRFSYFSRAALELLYQSGKKVDIIHCHDWQTAFVAPLYWDVYANLGFNSARICFTCHNFEYQGTAPARDLAWCGLDVEHLDRPDRMRDNSHGRINAVKGAVVYSNIVTTVSPTYALEVRSEGGRGLQDTLKVHSRKFLGILNGIDTDTWNPCTDRYLKVQYNAKDLQGKAANKAALREQLNLASAYPSQPLVGCITRLVAQKGVHLIRHAIYKTAELGGQFVLLGSSPVPEIQREFEGIADHFQNNNNIRLILKYDDALSHCIYAASDMFIVPSIFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPMEVRNGFTFVKADEQGLSSAMERAFNCYTRKPEVWKQLVQKDMTIDFSWDTSASQYEDIYQKAVARARAVA", "cigar": "432D2M200DM55D2M453D4M16D2M105D5MD3M73D3MDM51D2M30D3M158D2MD2M6D4M54D4M11DMD3M119D4MD4M55D4MD5M8D5M163D6M11D4M109D6M541D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D11M6D3M52D17MDM45D4M12D18M8D2M9D3MD4MD13M58D10M4D12M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D3M352D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_1BL_TGACv1_031136_AA0108420", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 421, "end": 659, "name": 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"MKLGPRDAWWEKVEKLEDLLETTANQVEHAAVILDHNHDLQDRLDKLEASLQAANISKFSCSLVDILQQKVKLVEERFQACNCEMHSQIELYEHSIVEFHDTLSKLIEESEKRSLENFTGNMPSELWSKISLLTDGWLLEKKISYNDASMLREMVHKRDSRLREAYLSYRGTENREVMDNLLKMALPGTSSGLHIAHIAAEMAPVAKVGGLADVISGLGKALQKKGHLVEIILPKYDCMQVDQVSNLRVLDVLVQSYFEGNMFNNKIWTGTVEGLPVYFIEPQHPAMFFSRAQYYGEHDDFKRFSYFSRAALELLYQSGKKVDIIHCHDWQTAFVAPLYWDVYANLGFNSARICFTCHNFEYQGTAPARDLAWCGLDVEHLDRPDRMRDNSHGRINAVKGAVVYSNIVTTVSPTYALEVRSEGGRGLQDTLKVHSRKFLGILNGIDTDTWNPSTDRYLKVQYNAKDLQGKAANKAALREQLNLASAYPSQPLVGCITRLVAQKGVHLIRHAIYKTAELGGQFVLLGSSPVPEIQREFEGIADHFQNNNNIRLILKYDDALSHCIYAASDMFIVPSIFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPMEVRNGFTFVKADEQGLSSAMERAFNCYTRKPEVWKQLVQKDMTIDFSWDTSASQYEDIYQKAVARARAVA", "cigar": 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"MCEEQDSYGRTKTAVAAMGRCRGWSVDEDKYDSRDIDVSENSLLSRSGSIFPRAAAQRPHKSATGADPLYNNRANVRSDEASVSAEKERQRMYEFKSVSESTNLHLLASKSSNLPVRSIRLRGYLKYNDGDGISNLKLEDLVGMIQNTEKNILLLNQARLQAMEHADKVLKEKEALQRKINILETRLSETDEQHKLSSEGNFSDSPLALELGILKEENILLKEDIEFFKTKLIEVAEIEEGIFKLEKERALLDASLRELESRFIAAQADTMKLGPRDAWWEKVEKLEDLLETTANQVEHAAVILDHNHDLQDRLDKLEASLQAANISKFSCSLVDLLQQKVKLVEERFQACNCEMHSQIELYEHSTVEFHDTLSKLIEESEKRSLENFTGNMPSELWSKISLLTDGWLLEKKISYNDASMLREMVQKRDSRLREAYLSYRGTENREVMDNLLKMALPGTSSGLHIAHIAAEMAPVAKVMMIQGLIQTEVGGLADVISGLGKALQKKGHLVEIILPKYDCMQVDQVSNLRVLDVLVQSYFEGNMFNNKIWTGTVEGLPVYFIEPQHPAMFFSRAQYYGEHDDFKRFSYFSRAALELLYQSGKKVDIIHCHDWQTAFVAPLYWDVYANLGFNSARICFTCHNFEYQGTAPARDLAWCGLDVEHLDRPDRMRDNSHGRINAVKGAVVYSNIVTTVSPTYALEVRSEGGRGLQDTLKVHSRKFLGILNGIDTDTWNPSTDRYLKVQYNAKDLQGKAANKAALREQLNLASAYPSQPLVGCITRLVAQKGVHLIRHAIYKTAELGGQFVLLGSSPVPEIQREFEGIADHFQNNNNIRLILKYDDALSHCIYAASDMFIVPSIFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPMEVRNGFTFVKADEQGLSSAMERAFNCYTRKPEVWKQLVQKDMTIDFSWDTSASQYEDIYQKAVARARAVA", "cigar": "433DM200DM55D3M451D5M16D2M105D9M73D3MDM51D2M30D3M158D2MD12M54D4M11DMD3M119D4MD4M55D4MD6M7D5M163D6M11D4M109D7M233DMD3M117D2M19D9M66D9M70D5MD10MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D11M6D3M52D17MDM45D4M12D18M8D2M9D3MD4MD13M58D10M4D12M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4D2M18D8M9D3M6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D3M352D", "taxon_id": 4572, "taxon_name": "Triticum urartu", "assembly": "ASM34745v1", "representative": { "id": "TRIUR3_08199", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 464, "end": 713, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 770, "end": 927, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 53, 91, 110, 125, 151, 460, 477, 488, 529, 555, 616, 680, 703, 773, 815, 865, 886, 911 ] } ], "representative": { "id": "TRIUR3_08199", "score": -100 } } ], "representative": { "id": "TRIUR3_08199", "score": -99.993899 } } ], "representative": { "id": "F775_21340", "score": -99.985833 } } ], "representative": { "id": "F775_21340", "score": -99.98465 } } ], "representative": { "id": "BRADI2G18810", "score": -99.963551 } }, { "node_id": 4738090, "distance_to_parent": 0.034976, "left_index": 1120, "right_index": 1157, "taxon_id": 147380, "taxon_name": "Oryzeae", "node_type": "speciation", "bootstrap": 79, "children": [ { "node_id": 426020, "distance_to_parent": 0.037208, "left_index": 1155, "right_index": 1156, "protein_stable_id": "LPERR05G19650.2", "gene_stable_id": "LPERR05G19650", "sequence": "MACLSAVAAAGAEAAPLLYSRRIAPSCPTVVSARRRLVVSCRARRRSLRTAAELPRKSTTNAKPNNGANIQRDEASVSTDKERQEKYEDENGISNLQLEDLVQMIQNTEKNIMLLNQARLQALDHVEKILKEKEDLQRKIKILETRLSETDAQLKLSTEGKFTAEINDSLPILELGNTKEKNMILKDDIQFLKTMFIEVAETEDGIFQLEKERALLDASLRELHSRFIDAQADMMKPGPRQYDTWWEKVENLGDLLETTANKVETAAMVLGRNHDLEDKVDRLEASLAEANRISYNDANTLREMVRKRDSCLREAYLSCRGMKDREIVDIFLKMTLSGTSSGLHIVHIAAEMAPVAKVGGLADVISGLGKALQKKGHLVEIILPKYDCMQNDQVNNLKVLDVLVQSYFEGKLFNNKIWTGTVEGLPVYFIEPQHPAKFFWRAQYYGEHDDFKRFAYFSRAALELLYQSQKKVDIIHCHDWQTAFVAPLYWEAYANLGFNSARICFTCHNFEYQGAAPAQDLACCGLDVEELDREDRMRDNNSHGRINVVKGAIVYSNIVTTVSPTYALEARKEGGRGLQESLKIHSRKFVGILNGIDTDTWNPSTDRHLKVQYNANDIQGKVANKAALRKQLKLSSTYASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIAEHFQNNNNIRLLLKYDDSLSHWIYAASDMFIVPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPMELRNGFTFVNPDEKALSGAMERAFNYYTKKPDVWKQLVQKDMRIDFSWDSSASQYEDIYQRAVARARAAA", "cigar": "432D2M200DM55D4M450D5M16D2M105D5MD3M73D3MD2M50D2M4D2M24D3M158D2M9D4M54D4M11DMD3M119D4MD4M55D4MD4M9D5M163D6M11D4M109D6M541D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D6M52D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D9M529D3M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D3M352D", "taxon_id": 77586, "taxon_name": "Leersia perrieri", "assembly": "Lperr_V1.4", "representative": { "id": "LPERR05G19650", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 344, "end": 582, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 640, "end": 793, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 49, 85, 111, 291, 340, 357, 398, 424, 485, 550, 573, 643, 685, 735, 756, 781 ] }, { "node_id": 4738091, "distance_to_parent": 0, "left_index": 1121, "right_index": 1154, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 79, "children": [ { "node_id": 425900, "distance_to_parent": 0.034832, "left_index": 1152, "right_index": 1153, "protein_stable_id": "OB05G31380.1", "gene_stable_id": "OB05G31380", "gene_description": "Uncharacterized protein", "sequence": "MIQNTEKNIMLLNQARLQALEHVEKVLKEKEELQKKIKKLEMRLSETDAQFKLSTEGKLSTEINDSLPVLELDDIREENMLLKDDIQFLKTILIEVAETEDSIFKLEKERALLDASLRELECRFIDTQADILKPGPRQYDAWWEKVENLGDLLETTTNKVENAAMVLGHNHDLEDKVDKLEASLAEANISKFSCYFVDCLKGKIKSVEERFQACNREMHSQIEQYENSLEEFHDILSKLVEETEKRSLEHSASSTPSELWSRISLLIDGWLLEKRISYNDANTLREMVWKRDSCLREAYLSCRGMKDREIVDNFLKMTLPGTSAGLHIVHIAAEMAPVAKVGGLADVISGLGKALQKKGHLVEIILPKYDCMQNDQVNNLKVLDVQVQSYFEGNRFNNKIWTGTVEGLPVYFIEPQHPAKFFWRAQYYGEHDDFRRFAYFSRAALELLYQSQKKIDIIHCHDWQTAFVAPLYWDVYANLGFNSARICFTCHNFEYQGTAPAHDLACCGLDVEQLDRPDRMQDNSHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDSLKVHSRKFVGILNGIDTDTWNPSTDRHLKVQYNANDLQGKEANKAALRKQLKMSSTNASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVSHIQREFEGIADHFQNNNNIRLLLKYDDSLSHWIYAASDMFIVPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDEAIPKELRNGFTFVNADEKSLSGAMERAFNYYKRKPEVWKQLVQKDMRIDFSWDSSASQYEDIYQRAVARARAAA", "cigar": "3007DM7D3M10D3M61DM20D11MD19M16D9M45D12M2D6M52D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D3M352D", "taxon_id": 4533, "taxon_name": "Oryza brachyantha", "assembly": "Oryza_brachyantha.v1.4b", "representative": { "id": "OB05G31380", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 327, "end": 565, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 619, "end": 774, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 8, 323, 340, 381, 407, 468, 532, 555, 625, 667, 717, 738, 763, 820 ] }, { "node_id": 4738093, "distance_to_parent": 0.016786, "left_index": 1122, "right_index": 1151, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425739, "distance_to_parent": 0.009924, "left_index": 1149, "right_index": 1150, "protein_stable_id": "OPUNC05G21230.1", "gene_stable_id": "OPUNC05G21230", "sequence": 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synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 699, "end": 853, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 47, 83, 109, 277, 399, 416, 457, 483, 547, 611, 634, 704, 746, 796, 817, 842 ] }, { "node_id": 4738099, "distance_to_parent": 0.006121, "left_index": 1123, "right_index": 1148, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 98, "children": [ { "node_id": 425793, "distance_to_parent": 0.004451, "left_index": 1146, "right_index": 1147, "protein_stable_id": "OGLUM05G25180.1", "gene_stable_id": "OGLUM05G25180", "sequence": 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"Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 719, "end": 873, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 45, 81, 107, 422, 439, 480, 506, 567, 631, 654, 724, 766, 816, 837, 862 ] }, { "node_id": 4738100, "distance_to_parent": 0.00491, "left_index": 1124, "right_index": 1145, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 67, "children": [ { "node_id": 425884, "distance_to_parent": 0.004238, "left_index": 1143, "right_index": 1144, "protein_stable_id": "KN542368.1_FGP001", "gene_stable_id": "KN542368.1_FG001", "sequence": "MDYLTSVDALGVDMWDSNCSNFRQNMSRNSVKLRFIFAGYRTAAELPRKSTSNDKHHNRVNMQRDEASVSSDKERQEKYGDENGISNLQLEDLIQMIQNTEKNIMLLNKARLQALEHVEKILKEKEDLQRKLRILETRLSETDARLKLSAERQFGTEINDSLPVLELDDIKEENMLLKDDIQFLKTMLIEVAETENSIFTLEKERALLDASLRELESRFIDAQADMLKPGPRQYDAWWEKVENLGDLLETATNKVENAAMVLGRNHDLEDKVDKLEASLAEANISKFSCYFVDLLQEKIKSVEEHFQVCNHEMHSQIELYENSIAEFHDILSKLVEETEKRSLEHSASSMPSELWSRISLLIDGWLLEKRISYNDANTLREMVRKRDSCLREAYLSCRGMKDREIVDNFLKITLPGTSSGLHIIHIAAEMAPVAKVGGLADVISGLGKALQKKGHLVEIILPKYDCMQNDQVNNLKVLDVVVQSYFEGNLFNNKIWTGTVEAYAGLPVYFIEPQHPAKFFWRAQYYGEHDDFKRFAYFSRAALELLYQSQKKIDIIHCHDWQTAFVAPLYWEAYANLGFNSARICFTCHNFEYQGAAPAQDLACCGLDVQQLDREDRMRDNSHGRINVVKGAIVYSNIVTTVSPTYALEVRSEGGRGLQDSLKLHSRKFVGILNGIDTDTWNPSTDRHLKVQYNANDLQGKAANKAALRKQLNLSSTNASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADHFQNNNNIRLLLKYDDSLSHWIYAASDMFIVPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPKELQNGFTFVHPDEKALSGAMERAFNYYNRKPEVWKQLVEKDMRIDFSWSSSASQYEDIYQRAVARARAAA", "cigar": "432D2M200DM55D7M172D2M270D3M21D2M105D5MDM163D3M158D2M9D4M54D4M11DMD3M119D4MD4M55D4MD4M9D5M163D6M11D4M109D6M541D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D6M52D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D23M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D3M352D", "taxon_id": 4528, "taxon_name": "Oryza longistaminata", "assembly": "O_longistaminata_v1.0", "representative": { "id": "KN542368.1_FG001", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 422, "end": 662, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 718, "end": 872, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 24, 77, 103, 418, 435, 476, 502, 566, 630, 653, 723, 765, 815, 836, 861 ] }, { "node_id": 4738101, "distance_to_parent": 0, "left_index": 1125, "right_index": 1142, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 12, "children": [ { "node_id": 425872, "distance_to_parent": 0.000848, "left_index": 1140, "right_index": 1141, "protein_stable_id": "OBART05G23810.1", "gene_stable_id": "OBART05G23810", "sequence": "MWAARGARDTRRPPSPSSSLHSATFSNRRPTRTPTPRPPSRVVPSSPPRSQNMSRNSVKLSFIFAGSRTAAELPRKSTSNDKHHNRVNMQRDEASVSSDKERQEKYGDENGISNLQLEDLIQMIQNTEKNIMLLNQARLQALEHVETVLKEKEDLQRKLKILETRLSETDARLKLSAEGQFGTEINDSLPVLELDDIKEENMLLKDDIQFLKTMLIEVAETENSIFTLEKERALLDASLRELEPRFIDAQADMLKSGPRQYDAWWEKVENLGDLLETATNKVENAAMVLGRNHDLEDKVDKLEASLAEANISKFSCYFVDLLQEKIKSVEERFQVCNHEMHSQIELYENSIAEFHDILSKLVEETEKRSLEHSASSMPSELWSRISLLIDGWLLEKRISYNDANTLREMVRKRDSCLREAYLSCRGMKDREIVDNFLKITLPGTSSGLHIIHIAAEMAPVAKVGGLADVISGLGKALQKKGHLVEIILPKYDCMQNDQVNNLKVLDVVVQSYFEGNLFNNKIWTGTVEGLPVYFIEPQHPAKFFWRAQYYGEHDDFKRFAYFSRAALELLYQSQKKIDIIHCHDWQTAFVAPLYWEAYANLGFNSARICFTCHNFEYQGAAPAQDLACCGLDVQQLDREDRMRDNSHGRINVVKGAIVYSNIVTTVSPTYALEVRSEGGRGLQDSLKLHSRKFVGILNGIDTDTWNPSTDRHLKVQYNANDLQGKAANKAALRKQLNLSSTNASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADHFQNNNNIRLLLKYDDSLSHWIYAASDMFIVPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPKELRNGFTFVHPDEKALSGAMERAFNYYNRKPEVWKQLVQKDMRIDFSWASSASQYEDIYQRAVARARAAA", "cigar": "1142D9M2D14M105D5MD3M73D3MDM51D12M17D6M158D2M9D4M54D4M11DMD3M119D4MD4M55D4MD4M9D5M163D6M11D4M109D6M541D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D6M52D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D3M352D", "taxon_id": 65489, "taxon_name": "Oryza barthii", "assembly": "O.barthii_v1", "representative": { "id": "OBART05G23810", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 449, "end": 686, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 742, "end": 896, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 51, 104, 130, 445, 462, 503, 529, 590, 654, 677, 747, 789, 839, 860, 885 ] }, { "node_id": 4738102, "distance_to_parent": 0, "left_index": 1126, "right_index": 1139, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 11, "children": [ { "node_id": 4738107, "distance_to_parent": 0.001688, "left_index": 1133, "right_index": 1138, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 89, "children": [ { "node_id": 425682, "distance_to_parent": 0, "left_index": 1136, "right_index": 1137, "protein_stable_id": "ONIVA05G24550.1", "gene_stable_id": "ONIVA05G24550", "sequence": "MSRNSVKLSFIFAGSRTAAELPRKSTSNDKHHNRVNMQRDEASVSSDKERQEKYGDENGISNLQLEDLIQMIQNTEKNIMLLNQARLQALEHVETVLKEKEDLQRKLKILETRLSETDARLKLSAEGQFGTEINDSLPVLELDDIKEENMLLKDDIQFLKTMLIEVAETENSIFTLEKERALLDASLRELESRFIDAQADMLKSDPRQYDAWWEKVENLGDLLETATNKVENAAMVLGRNHDLEDKVDKLEASLAEANISKFSCYFVDLLQEKIKSVEERFQVCNHEMHSQIELYENSIAEFHDILSKLVEETEKRSLEHSASSMPSELWSRISLLIDGWLLEKRISYNDANTLREMVRKRDSCLREAYLSCRGMKDREIVDNFLKITLPGTSSGLHIIHIAAEMAPVAKVGGLADVISGLGKALQKKGHLVEIILPKYDCMQNDQVNNLKVLDVVVQSYFEGNLFNNKIWTGTVEGLPVYFIEPQHPAKFFWRAQYYGEHDDFKRFAYFSRAALELLYQSQKKIDIIHCHDWQTAFVAPLYWEAYANLGFNSARICFTCHNFEYQGAAPAQDLACCGLDVQQLDREDRMRDNSHGRINVVKGAIVYSNIVTTVSPTYALEVRSEGGRGLQDSLKLHSRKFVGILNGIDTDTWNPSTDRHLKVQYNANDLQGKAANKAALRKQLNLSSTNASQPLREFEGIADHFQNNNNIRLLLKYDDSLSHWIYAASDMFIVPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPKELRNGFTFVHPDEKALSGAMERAFNYYNRKPEVWKQLVQKDMRIDFSWASSASQYEDIYQRAVARARAAA", "cigar": "1444DM158D2M9D4M54D4M11DMD3M119D4MD4M55D4MD4M9D5M163D6M11D4M109D6M541D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D6M52D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M282D7M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D3M352D", "taxon_id": 4536, "taxon_name": "Oryza nivara", "assembly": "AWHD00000000", "representative": { "id": "ONIVA05G24550", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 397, "end": 634, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 697, "end": 802, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 52, 78, 393, 410, 451, 477, 538, 602, 625, 695, 745, 766, 791 ] }, { "node_id": 425678, "distance_to_parent": 0, "left_index": 1134, "right_index": 1135, "protein_stable_id": "BGIOSGA020250-PA", "gene_stable_id": "BGIOSGA020250", "gene_description": "Putative uncharacterized protein", "sequence": 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"description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 716, "end": 870, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 42, 78, 104, 419, 436, 477, 503, 564, 628, 651, 721, 763, 813, 834, 859 ] } ], "representative": { "id": "ONIVA05G24550", "score": 0 } }, { "node_id": 4738112, "distance_to_parent": 0, "left_index": 1127, "right_index": 1132, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 31, "children": [ { "node_id": 425670, "distance_to_parent": 0.000844, "left_index": 1130, "right_index": 1131, "protein_stable_id": "OS05T0533600-01", "gene_stable_id": "OS05G0533600", "gene_description": " protein; Putative starch synthase IV; Starch synthase IVb; Starch synthase-like protein; cDNA clone:J013110M10, full insert sequence", "sequence": "MACLAAGAEAAPLLFRRRLAPSPVAARRRLLVSCRARRRGLRTAAELPRKSTSNDKHHNRVNMQRDEASVSSDKERQEKYGDENGISNLQLEDLIQMIQNTEKNIMLLNQARLQALEHVETVLKEKEDLQRKLKILETRLSETDARLKLSAEGQFGTEINDSLPVLELDDIKEENMLLKDDIQFLKTMLIEVAETENSIFTLEKERALLDASLRELESRFIDAQADMLKSDPRQYDAWWEKVENLGDLLETATNKVENAAMVLGRNHDLEDKVDKLEASLAEANISKFSCYFVDLLQEKIKSVEERFQVCNHEMHSQIELYENSIAEFHDILSKLVEETEKRSLEHSASSMPSELWSRISLLIDGWLLEKRISYNDANTLREMVRKRDSCLREAYLSCRGMKDREIVDNFLKITLPGTSSGLHIIHIAAEMAPVAKVGGLADVISGLGKALQKKGHLVEIILPKYDCMQNDQVNNLKVLDVVVQSYFEGNLFNNKIWTGTVEGLPVYFIEPQHPAKFFWRAQYYGEHDDFKRFAYFSRAALELLYQSQKKIDIIHCHDWQTAFVAPLYWEAYANLGFNSARICFTCHNFEYQGAAPAQDLACCGLDVQQLDREDRMRDNSHGRINVVKGAIVYSNIVTTVSPTYALEVRSEGGRGLQDSLKLHSRKFVGILNGIDTDTWNPSTDRHLKVQYNANDLQGKAANKAALRKQLNLSSTNASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADHFQNNNNIRLLLKYDDSLSHWIYAASDMFIVPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPKELRNGFTFVHPDEKALSGAMERAFNYYNRKPEVWKQLVQKDMRIDFSWASSASQYEDIYQRAVARARAAA", "cigar": "432D2M200DM55DM454D4M16D2M105D5MD3M73D3MDM51D2M30D3M158D2M9D4M54D4M11DMD3M119D4MD4M55D4MD4M9D5M163D6M11D4M109D6M541D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D6M52D17MDM45D4M12D18M8D2M9D3MD4MD13M58D11M2D13M4D4M12D3M38D3M19D6M42D12M5D18M4D15M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D11MD3M30D13M6D16M2D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D3M352D", "taxon_id": 39947, "taxon_name": "Oryza sativa Japonica Group", "assembly": "IRGSP-1.0", "representative": { "id": "OS05G0533600", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 423, "end": 660, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 716, "end": 870, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 42, 78, 104, 419, 436, 477, 503, 564, 628, 651, 721, 763, 813, 834, 859 ] }, { "node_id": 425958, "distance_to_parent": 0, "left_index": 1128, "right_index": 1129, "protein_stable_id": "ORUFI05G25430.1", "gene_stable_id": "ORUFI05G25430", "sequence": "MACMAAGAEAAPLLFRRRLAPSPVAARRRLLVSCRARRRGLRTAAELPRKSTSNDKHHNRVNMQRDEASVSSDKERQEKYGDENGISNLQLEDLIQMIQNTEKNIMLLNQARLQALEHVETVLKEKEDLQRKLKILETRLSETDARLKLSAEGQFGTEINDSLPVLELDDIKEENMLLKDDIQFLKTMLIEVAETENSIFTLEKERALLDASLRELESRFIDAQADMLKSDPRQYDAWWEKVENLGDLLETATNKVENAAMVLGRNHDLEDKVDKLEASLAEANISKFSCYFVDLLQEKIKSVEERFQVCNHEMHSQIELYENSIAEFHDILSKLVEETEKRSLEHSASSMPSELWSRISLLIDGWLLEKRISYNDANTLREMVRKRDSCLREAYLSCRGMKDREIVDNFLKITLPGTSSGLHIIHIAAEMAPVAKVGGLADVISGLGKALQKKGHLVEIILPKYDCMQNDQVNNLKVLDVVVQSYFEGNLFNNKIWTGTVEGLPVYFIEPQHPAKFFWRAQYYGEHDDFKRFAYFSRAALELLYQSQKKIDIIHCHDWQTAFVAPLYWEAYANLGFNSARICFTCHNFEYQGAAPAQDLACCGLDVQQLDREDRMRDNSHGRINVVKGAIVYSNIVTTVSPTYALEVRSEGGRGLQDSLKLHSRKFVGILNGIDTDTWNPSTDRHLKVQYNANDLQGKAANKAALRKQLNLSSTNASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADHFQNNNNIRLLLKYDDSLSHWIYAASDMFIVPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPKELRNGFTFVHPDEKALSGAMERAFNYYNRKPEVWKQLVQKDMRIDFSWASSASQYEDIYQRAVARARAAA", "cigar": 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synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 716, "end": 870, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 42, 78, 104, 419, 436, 477, 503, 564, 628, 651, 721, 763, 813, 834, 859 ] } ], "representative": { "id": "ORUFI05G25430", "score": 0 } } ], "representative": { "id": "ORUFI05G25430", "score": 0 } } ], "representative": { "id": "ORUFI05G25430", "score": 0 } } ], "representative": { "id": "ORUFI05G25430", "score": 0 } } ], "representative": { "id": "OGLUM05G25180", "score": 0.004451 } } ], "representative": { "id": "OPUNC05G21230", "score": 0.009924 } } ], "representative": { "id": "OPUNC05G21230", "score": 0.026709999999999998 } } ], "representative": { "id": "OPUNC05G21230", "score": 0.026709999999999998 } } ], "representative": { "id": "BRADI2G18810", "score": -99.917982 } } ], "representative": { "id": "Si021148m.g", "score": -99.92007699999999 } } ], "representative": { "id": "Si021148m.g", "score": -99.892438 } }, { "node_id": 4738062, "distance_to_parent": 0.064577, "left_index": 1107, "right_index": 1116, "taxon_id": 214687, "taxon_name": "Musa acuminata subsp. malaccensis", "node_type": "duplication", "bootstrap": 1, "duplication_confidence_score": 1, "children": [ { "node_id": 426064, "distance_to_parent": 0.058027, "left_index": 1114, "right_index": 1115, "protein_stable_id": "GSMUA_Achr3P16340_001", "gene_stable_id": "GSMUA_Achr3G16340_001", "gene_description": "starch synthase, putative, expressed", "sequence": "MASEACSLVLGRGLSCTKPRARPPIARLRPSLRVSGKMRNRNLSSQQKRQQAKRVPSRQFPLNMDTQSHKNNNSEAQESSVAGISRSGEKTISSDDADSDINREMNVAVLTPEETNIVIENDVRQSHSSIRLEDLISMIRNAEKNILLLNQARIHALKELDKILSEKEALQAEINNLEMKLAETDARIKNSVKEGKHGILDRESPLVLELNDLRKENEFLKDDIQTLKLKLADVSETEEHVENLQALFDNARQKLDHPSLDLQQYHELQKKVDKLEASITETNMSKFPSEKFHHFDEILQQKIDILEKRLQESDLEIHSQIEMFQESVREFHHTLTKLKEESEKRSQKSSLENMPWEFWSRLLLIIEGWLLEKKISPNDAKLLREMIWKKDAQIHDAFLASRSKNEHEKVATFLKLTYSRKSPGLHIIHIAAEMAPVAKVGGLGDVVSGLGKALQRKGHLVEIILPKYDCMEHDLITDLKALDVVVESYFDGRTFKNKIWIGTIEGLPVYFIEPHHPAKFFWRGKYYGEHDDFKRFSFFSRAALELLYQAGKKPDIIHCHDWQTAFVAPLYWDIYAAKGFNSARICFTCHNFEYQGTAPASELASCGLNVHHLNRPDRMQDNSAHDKVNPVKGAIVFSNIVTTVSPTYAQEVCTIEGGRGLHETLKSSSKKFVGVLNGIDTDAWNPSTDNYIRVQYSADDLQGKAENKDALRKLLKLSSSKVTQPLVNFFTSN", "cigar": "432D4M92DM105D3M53D6M464D7M50D2M52D6M79DMDM255D4M54D4M11DMD4M118D9M55D4MD5M8D5M163D6M2D13M66D11M32D7M453D12M65D4M2DM5D4MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D11M38D8M15D17MDM45D4M12D14M122D7M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4DM286D6M2519D", "taxon_id": 214687, "taxon_name": "Musa acuminata subsp. malaccensis", "assembly": "MA1", "representative": { "id": "GSMUA_Achr3G16340_001", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 426, "end": 666, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 44, 118, 145, 189, 240, 422, 439, 480, 506, 567, 632, 656 ] }, { "node_id": 4738067, "distance_to_parent": 0.03241, "left_index": 1108, "right_index": 1113, "taxon_id": 214687, "taxon_name": "Musa acuminata subsp. malaccensis", "node_type": "duplication", "bootstrap": 34, "duplication_confidence_score": 1, "children": [ { "node_id": 426022, "distance_to_parent": 0.072208, "left_index": 1111, "right_index": 1112, "protein_stable_id": "GSMUA_Achr3P16350_001", "gene_stable_id": "GSMUA_Achr3G16350_001", "gene_description": "Putative Glycogen synthase", "sequence": "MRDVALSAENSSLFFWLFLCSYLRMVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAHIQQEFEGIANHFQSHSHVRLLLKYDDALSHLIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDIDDNTVPVQYRNGFTFITPNEQGLSNAMERAFQYCIRSPESWQQLVQRDMRLDFSWNSSATQYEELYERSVARARATTRV", "cigar": "1674D2M976D6M640D5M1455D3M176DM3D3M233D4M134DM4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 214687, "taxon_name": "Musa acuminata subsp. malaccensis", "assembly": "MA1", "representative": { "id": "GSMUA_Achr3G16350_001", "score": 0 }, "exon_junctions": [ 25, 67, 117, 138, 163 ] }, { "node_id": 425978, "distance_to_parent": 0.024317, "left_index": 1109, "right_index": 1110, "protein_stable_id": "GSMUA_Achr8P27560_001", "gene_stable_id": "GSMUA_Achr8G27560_001", "gene_description": "Putative Glycogen synthase", "sequence": "MASVASYLVLGRGFSCAKTPTRPPIACLRLSRAVSCKMRNRHLSSQQKRQQFKRAPTERLSLNMNAQSHDNIGCEPEEASSAGVSHSSQITIPSNDAESDSNSETDVAVSSFEETNMVIENNDEQEHPSIHLEDLIATIRNAEKIEELEKILSEKEALQAEINNLEMKLAETDARIKVAAQEKINAELLENQLEKLKTEISSRNSIEEGKHGTLDDESPLVLELNDLRKENALLKDDIQMLKLKLADVSKTEEPLLDKVENLQALFNDASRVMDQPSLGLQQYHELQKKVDKIEALVTEATVSKFPSENFHHYDETLREKIELLEKQLWESDQEMHSQIQLFQESVREFHDALERLKEEIKKRSQELSLENLPQEFWSRLLLIIDGWLLEKKISVNDAKLLREMTWKKDAQIRDAYLASRSKSEHEKLATFLKLTYSRTSPGMHIIHIAAEMAPVAKVGGLGDVISGLGKALQRKGHLVEIVLPKYDCMQYDLITDMKALDVVVESYFDGQLFRNKIWVGIIEGLPVYFIEPHHPAKFFWRGKYYGEYDDFKRFSFFSRAAVELLYQAGKKPDIIHCHDWQTAFVAPLYWDIYAAKGFNSARICFTCHNFEYQGTAPASELASCGLDVHQLNRPDRMRDHSADDKVNTVKGAIVFSNIVTTVSPTYSQEVRTVEGGRGLHETLKSHSKKFIGILNGIDTDAWNPSTDNYISVQYSADDLQGKAENKDAIRKCLKLSGSEGSQPLVGCITRLVPQKGVHLIRHAIYCALELGGQFVLLGSSPVPHIQREFEDIANHFQSHSHVRLLLKYDDALSHLIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDVDDNTIPEQYQNGFTFVAPDEQGLSSAMERAFQHYIRSPESWQQLVQKDMRLDFSWDSSASQYEELYERSVARARAAARV", "cigar": "432D4M92D3M103DM55D6M464D7M50D2M52D10M29DM306DM54D4M11DMD4M66DM52D8M55D4MD5M8D5M163D6M2D13M66D11M32D7M453D12M65D4M6DMD4MDM220D2MD3M13D5M16D2M7D3M10D3M61DM33D18M16D9M45D12M2D13MD6M9D16M15D15MDM45D4M12D14M118D11M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 214687, "taxon_name": "Musa acuminata subsp. malaccensis", "assembly": "MA1", "representative": { "id": "GSMUA_Achr8G27560_001", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 444, "end": 684, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 738, "end": 895, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 44, 118, 145, 254, 440, 457, 498, 524, 585, 650, 674, 744, 786, 836, 857, 882 ] } ], "representative": { "id": "GSMUA_Achr8G27560_001", "score": 0.024317 } } ], "representative": { "id": "GSMUA_Achr8G27560_001", "score": 0.056727 } } ], "representative": { "id": "Si021148m.g", "score": -99.775957 } }, { "node_id": 4738165, "distance_to_parent": 0.033445, "left_index": 1028, "right_index": 1105, "taxon_id": 1437201, "taxon_name": "Pentapetalae", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4738205, "distance_to_parent": 0.02572, "left_index": 1095, "right_index": 1104, "taxon_id": 1437201, "taxon_name": "Pentapetalae", "node_type": "speciation", "bootstrap": 3, "children": [ { "node_id": 425794, "distance_to_parent": 0.174552, "left_index": 1102, "right_index": 1103, "protein_stable_id": "KMS96056", "gene_stable_id": "BVRB_002560", "gene_description": "hypothetical protein", "sequence": "MAAKLHTCFLSHGLIGLNSKHSNLCSADFSRHSHRLPPASCKIRQRNVSSQHKRRQVKKSSPEKLRIDANLKPNGEDAEFGNASINGVSSSKQGSMPKNGVDNSVVNKLDNESNSLSLLDDKVLMLPPPRDNSLTITQLDSSSMQHNDDINADPKSLSLNLVGAKQLSSIQLKDLINMIRSAEKNVLLLNQARVRALEDLEKILQEKEALQGDIDALELKLTETDARIKIATQEKIHVELLQDELEKMRKEVSKRSDAEEVHDISYNKDHKSLNSDFYSLSNELSALKAENASLKDDIEALRAELSNVSITDGRVTLLEKERMYLESTVKDLELKLEASQEDVKKLSMLEYEYNSLCEKVHNLQALLDNATKQAEHAVVVLQQNQELRKKVERLEESYAEGNVYKLSSEKMQQYNELMQQKVKLLEERLERSDEEINSYVDIYQESMKEFQDTLNNLKQGNEEKVVDGPVYDMPWEFWSQMLLMVDGWLLEKKLSSNDAKLLREMVWKRESCICDAYLECEEKTEREMLAKFLSLTSASTRSALHVIHIAAEMAPVAKVGGLGDVVTGLSKALQKKGHLVEIVLPKYDCMQYDLIQNLRALDVEVESYFDGQLYKNKIWIGTVEGLPVYFIEPYHPDKFFWRGQHYGENDDFKRFSFFSRAALELLLQAGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGTAPASELASCGLDVYQLNRTDRMQDNSADDRINPVKGAVVFSNIVTTVSPTYAQEVRTPEGGKGLHTTLNSHSKKFIGILNGIDTDTWNPATDSRIEVQYNASDLQGKMANKQALRRLLGLRLSDSMQPLVGCITRLVPQKGVHLIRHAIYRTIELGGQFVLLGSSPVHHIQREFEGIANQFQNHDNARLILKYDESLSRSIYAASDIFIIPSIFEPCGLTQMIAMRYGAIPIVRKTGGLNDSVFDVDDDTIPPQFRNGFTFLSPDEQGFNSALDRAIQYYKNDRESWEQLVQKVMSIDFSWDSSSGQYEELYAKSVARARAAKRA", "cigar": "432D4M92D3M103DM55D6M450D3M11D7M50D2M52D2M4D4M77DM244D2MDM7D4M54D4M11DMD4M66DM52D8M55D4MD5M8D5M163D5M3D13M66D18M24D7M109D9M110D6MD4M117D2M19D9M66D9M3D2M65D4M6DMD4MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D13MD6M6D17M4DM6D21MDM45D4M12D18M8D2M9D3MD4MD13M58D26M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 3555, "taxon_name": "Beta vulgaris subsp. vulgaris", "assembly": "RefBeet-1.2.2", "representative": { "id": "BVRB_002560", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 545, "end": 785, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 840, "end": 1004, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 49, 157, 185, 541, 558, 599, 625, 686, 751, 775, 845, 887, 937, 958, 983 ] }, { "node_id": 4738206, "distance_to_parent": 0.140462, "left_index": 1096, "right_index": 1101, "taxon_id": 4107, "taxon_name": "Solanum", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425894, "distance_to_parent": 0.013013, "left_index": 1099, "right_index": 1100, "protein_stable_id": "Solyc02g071040.2.1", "gene_stable_id": "Solyc02g071040.2", "sequence": "MEMKISNCFPTQKWCGGASLSRQVNVRFYPLPSQRLPPASGKMRQRRNFSLQNKKKQTKTINIERPPDVDLQLSDDIDSDTEKMSKQSLSNSNQEVPIEENVDTSTETKSSDESTYSSVDSNEEGQPSSVHLKDLIGMIRNAEKNIHLLNEARVHALEELQKVLGEKEDLHGKINILEMKLAETDARLRVASQEKIHVELLEDQLGKLKNELSSSRGSEENVLHVNNSVPLSRSDLVNSLSEQCDSLRKENMLLKQDLQSMKSELSLVKETDERILMLEKERSVLESSLSELESKLAASQEGVSELSALKLECKNLYEKVEHLQALLAKATKQADQAISVLQQNQELRKKVDRLEESLEEASIYKLSSEKLQQYNEQMQQKIKLLDERLQRSDEEIQSYVQLHQDSVKEFQDTLDNLKNETKKKALDEPVDEMPSEFWSRLLLMIEGWSMEKKISKDDAKLLRELVWKRDRRICDAYMSCKEKNDREILAAFLRFTSSPTRPGLHIIHIAAEMAPVAKVGGLGDVVAGLGKALQEKGHLVEIVLPKYDCMQYESIKDMKVLDVVVESYFDGRLYNNNIWTGTVEGLPVYFIEPQHPGKFFCRGQLYGEHDDFKRFSFFSRVALEFLLQAEKRPDIIHCHDWQTAFVAPLYWEIYVPKGLDSARICFTCHNFEYQGTAPASELTSCGLDAYHLNRPDRMQDNSANDRINPVKGAIVFSNIVTTVSPTYAQEVRSVQGGKGLHATINSHSKKFAGILNGIDTAAWNPASDNFLKVQYSASDIDGKIENKEALRRLLGLSSSDFRQPLVGCITRLVPQKGVHLIRHAVYRTLELGGQFVLLGSSPVPHIQREFEDIANHFQNHEHARLVLKYDEALSHLIYAASDMLIIPSIFEPCGLTQMIAMRYGSIPIARKTGGLNDSVFDVDDDSIPLQFRNGFTFATADEQGFNNALERAFNYYMNNYEIWKEFVQKDMSIDFSWDSSASQYEELYEKAVLRARAASRN", "cigar": "432D4M92D3M103DM55D6M448DMD3M127D5M29D2MD4M37D3MDM244D2MDM7D4M54D4M11DMD4M66D2M51D8M55D3M2D5M8D5M163D6M2D13M65D7M37D6M109D7M338D7M72D2M6DMD4MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D13MD6M5D14M5D4M6D21MDM45D4M12D18M8D2M9D3MD4MD13M58D26M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 4081, "taxon_name": "Solanum lycopersicum", "assembly": "SL2.50", "representative": { "id": "Solyc02g071040.2", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 505, "end": 745, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 803, "end": 953, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 50, 117, 145, 501, 518, 559, 585, 646, 711, 735, 805, 847, 897, 918, 943 ] }, { "node_id": 425665, "distance_to_parent": 0.010202, "left_index": 1097, "right_index": 1098, "protein_stable_id": "PGSC0003DMT400021444", "gene_stable_id": "PGSC0003DMG400008322", "gene_display_label": "ATSS4", "gene_description": "Starch synthase IV", "sequence": "MEMKISNCFPTQKWCGGAPFSRQVNVRFYPLPSQRLLPASSKMRQRRNFSLQNKKKQTKTINIERPPDVDLQSSDDVDSDTEKMSKRSLSSSNQEVSIEENVDTLTETKSSDEITYSSVDSNEEGRPSSVHLKDLIGMIRNAEKNIHLLNEARVHALEELQKVLGEKEDLHGKINILEMKLAETDARLRVASQEKIHVELLEDQLEKIKNELSSSRGSEENVLHVNNSVPLSHSDSVNSLSEEFDSLRKENILLKQDLQAMKSGLSLVKETDERILMLEKERSVLESSLSELESKLAASQEDVSELSSLKLECKKLYEKVEHLQALLAKATKQADQALSVLQQNQELRKKVDRLEESLEEASIYKLSSEKLQQYNEQMQQKIKLLDERLQRSDEEIQSYVQLHQDSVKEFQDTLDNLKNETKKKALDEPVNEMPSEFWSWLLLMIEGWSMEKKISKDDAKLLRELVWKRDGSICDAYMSCKEKNDREILAAFLRFTSSPTRPGLHIIHIAAEMAPVAKVGGLGDVVAGLGKALQEKGHLVEIVLPKYDCMQYESIKDMKVLDVVVESYFDGRLYKNNIWTGIVEGLPVYFIEPQHPGKFFCRGQLYGEHDDFKRFSFFSRVALELLLQAEKRPDIIHCHDWQTAFVAPLYWEIYVPKGLDSARICFTCHNFEYQGTAAASELTSCGLDAYHLNKPDRMQDNSANDRINPVKGAIVFSNIVTTVSPTYAQEVRSAQGGKGLHATINSHSKKFAGILNGIDTDAWNPASDNFLKVQYSASDIDGKIQNKEALRRLLGLSSSDFRQPLVSCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVPHIQREFEDIGNHFQNHEHARLVLKYDEALSHLIYAASDMLIIPSIFEPCGLTQMIAMRYGSIPIARKTGGLNDSVFDVDDDSIPLQFRNGFTFVTADEQGFNNALERAFNYYMNNAETWKELVQKDMSIDFSWDSSASQYEELYEKAVLRARAASRS", "cigar": "432D4M92D3M103DM55D6M448DMD3M127D5M29D2MD4M37D3MDM244D2MDM7D4M54D4M11DMD4M66D2M51D8M55D3M2D5M8D5M163D6M2D13M65D7M37D6M109D7M338D7M72D2M6DMD4MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D13MD6M5D14M5D4M6D21MDM45D4M12D18M8D2M9D3MD4MD13M58D26M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 4113, "taxon_name": "Solanum tuberosum", "assembly": "SolTub_3.0", "representative": { "id": "PGSC0003DMG400008322", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 505, "end": 745, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 803, "end": 953, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 50, 117, 145, 501, 518, 559, 585, 646, 711, 735, 805, 847, 897, 918, 943 ] } ], "representative": { "id": "PGSC0003DMG400008322", "score": -149.989798 } } ], "representative": { "id": "PGSC0003DMG400008322", "score": -149.849336 } }, { "node_id": 4738167, "distance_to_parent": 0.025321, "left_index": 1029, "right_index": 1094, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "dubious", "bootstrap": 0, "duplication_confidence_score": 0, "children": [ { "node_id": 4738170, "distance_to_parent": 0.012787, "left_index": 1040, "right_index": 1093, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4738190, "distance_to_parent": 0.183841, "left_index": 1075, "right_index": 1092, "taxon_id": 3700, "taxon_name": "Brassicaceae", "node_type": "speciation", "bootstrap": 99, "children": [ { "node_id": 426011, "distance_to_parent": 0.026336, "left_index": 1090, "right_index": 1091, "protein_stable_id": "AT4G18240.1", "gene_stable_id": "AT4G18240", "gene_display_label": "SS4", "gene_description": "Probable starch synthase 4, chloroplastic/amyloplastic", "sequence": "MTTKLSSFCFLTHGLAGISCEREHGSSRRFFYLPSRRLVSTSCKMRQQRGFDSSKRQEVKKGSPKPILSINSGLQSNNDEESDLENGSADSVPSLKSDAEKGSSIHGSIDMNHADENLEKKDDIQTTEVTRRKSKTAKKKGESIHATIDIGHDDGKNLDNITVPEVAKALSLNKSEGEQISDGQFGELMTMIRSAEKNILRLDEARATALDDLNKILSDKEALQGEINVLEMKLSETDERIKTAAQEKAHVELLEEQLEKLRHEMISPIESDGYVLALSKELETLKLENLSLRNDIEMLKSELDSVKDTGERVVVLEKECSGLESSVKDLESKLSVSQEDVSQLSTLKIECTDLWAKVETLQLLLDRATKQAEQAVIVLQQNQDLRNKVDKIEESLKEANVYKESSEKIQQYNELMQHKVTLLEERLEKSDAEIFSYVQLYQESIKEFQETLESLKEESKKKSRDEPVDDMPWDYWSRLLLTVDGWLLEKKIASNDADLLRDMVWKKDRRIHDTYIDVKDKNERDAISAFLKLVSSPTSSGLYVVHIAAEMAPVAKVGGLGDVVAGLGKALQRKGHLVEIILPKYDCMQYDRVRDLRALDTVVESYFDGKLYKNKIWIGTVEGLPVHFIEPQHPSKFFWRGQFYGEQDDFRRFSYFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLDSARICFTCHNFEYQGTASASELGSCGLDVNQLNRPDRMQDHSSGDRVNPVKGAIIFSNIVTTVSPTYAQEVRTAEGGKGLHSTLNFHSKKFIGILNGIDTDSWNPATDPFLKAQFNAKDLQGKEENKHALRKQLGLSSAESRRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVPHIQREFEGIEQQFKSHDHVRLLLKYDEALSHTIYAASDLFIIPSIFEPCGLTQMIAMRYGSIPIARKTGGLNDSVFDIDDDTIPTQFQNGFTFQTADEQGFNYALERAFNHYKKDEEKWMRLVEKVMSIDFSWGSSATQYEELYTRSVSRARAVPNRT", "cigar": "432D4M92D3M102D2M55D6M450D3M11D7M50D2M52D2M42D2M37D3MDM244D2MDM7D4M54D4M11DMD4M66DM52D8M55D10M8D5M163D6M2D16M4D2M53D22M25DMD5M107D11M103D3M6D3MD4M117D2M19D8M69D7MD4M65D4M6DMD4MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D13MD5M25D4M6D21MDM45D4M12D18M8D2M9D3MD4MD13M58D26M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D6M349D", "taxon_id": 3702, "taxon_name": "Arabidopsis thaliana", "assembly": "TAIR10", "representative": { "id": "AT4G18240", "score": -175 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 544, "end": 783, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 839, "end": 994, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 52, 170, 198, 539, 556, 597, 623, 684, 749, 773, 843, 885, 935, 956, 981 ] }, { "node_id": 4738191, "distance_to_parent": 0.064785, "left_index": 1076, "right_index": 1089, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "duplication", "bootstrap": 93, "duplication_confidence_score": 0.3333, "children": [ { "node_id": 4738192, "distance_to_parent": 0.014003, "left_index": 1083, "right_index": 1088, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "speciation", "bootstrap": 93, "children": [ { "node_id": 426018, "distance_to_parent": 0.002666, "left_index": 1086, "right_index": 1087, "protein_stable_id": "CDY08902", "gene_stable_id": "GSBRNA2T00000908001", "gene_display_label": "BnaC08g11320D", "sequence": "MTTTKLSSCFLTNGLVGISCKREQGGSRRFFYLPSRRLLPASCKIRQQRGFDSSKRQDIKKGSPEPILPINSSLQSNSEEEDSQPDNGSADTIHSTVETNHVDSSTENRDEDIQQSEVTRLKNKHTKKKESDGQDLNVLTVPEVAKALSINKSGGEQFSDGQFGELMTMIRNAEQNILRLDQARVSALAELSKILSEKEALQGEINVLEMKLAETDERIKTAAQEKVRAELLEEQLEKLRQEMVSPPPESDGYVQSLSKEIETLKIENLSLRNDIETLKSKLESVENTDERVVVLEKECSGLEFSVKDLESKLLVSQEDVSKLSSLKTECSDLWTKVESLQLLLDRATKQAEQAVLVLQQNQDFKSRVEKIEESLKEANVYKESSEKIQLYNELMQDKVELLEERLEKSDAEIFSYVQLYQESIKEFQETLGRLKEESNRKEPRDEPVDDMPWDYWSRLLLTVDGWLLEKKIGSDDAESLREMVWKKDRRIHDTYIDVKDKSERDAISAFLKLVSSPTSQGLYVVHIAAEMAPVAKVGGLGDVVAGLGKALQRRGHLVEIILPKYDCMQYDRVRDLRALDTVVESYFDGKLYKNKIWIGTVEGLPVHFIEPQHPSKFFWRGQFYGEKDDFKRFSYFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLDSARICFTCHNFEYQGTASASDLGSCGLDVNQLNRPDRMQDHSSGDRVNPVKGAIIFSNIVTTVSPTYAQEVRTSEGGKGLHSTLNSNSKKFIGILNGIDTDSWNPATDPFLKAQFNARDLQGKEENKYALRKQLGLSSAESRRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVPHIQREFEGIEQQFKSHDHVRLLLKYDEALSHSIYAASDMFIIPSIFEPCGLTQMIAMRYGSIPIARKTGGLNDSVFDIDDDTIPTQFQNGFAFQTADEQGLNYALERAFNHYKKDEEKWMRLMEKVMSIDFSWASSATQYEELYTRSVAKARASPNRT", "cigar": "431D5M92D3M103DM55D6M450D3M11D7M50D2M52D2M42D2M37D3MDM244D2MDM7D4M54D4M11DMD4M66DM52D8M55D10M8D5M163D7MD9M70D18M25D7M107D11M103D2M154D7M69D7MD4M65D4M6DMD4MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D13MD6M24D4M6D21MDM45D4M12D18M8D2M9D3MD4MD13M58D26M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D17M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D6M349D", "taxon_id": 3708, "taxon_name": "Brassica napus", "assembly": "AST_PRJEB5043_v1", "representative": { "id": "GSBRNA2T00000908001", "score": -50 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 524, "end": 763, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 819, "end": 975, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 52, 148, 176, 519, 536, 577, 603, 664, 729, 753, 865, 915, 936, 961 ] }, { "node_id": 426029, "distance_to_parent": 0.000844, "left_index": 1084, "right_index": 1085, "protein_stable_id": "Bo8g050010.1", "gene_stable_id": "Bo8g050010", "gene_display_label": "ATSS4", "gene_description": "starch synthase 4", "sequence": "MKLAETDERIKTAAQEKVRVELLEEQLEKLRQEMVSPPPESDGYVLALSKEIETLKIENLSLRNDIETLKSKLESVENTDERVVVLEKECSGLESSVKDLESKLLVSQEDVSKLSSLKTECSDLWTKVESLQLLLDRATKQAEQAVLVLQQNQDFKSRVEKIEESLKEANVYKESSEKIQQYNELMQDKVELLEERLEKSDAEIFSYVQLYQESIKEFQETLERLKEESNRKEPRDEPVDDMPWDYWSRLLLTVDGWLLEKKIGSDDAESLREMVWKKDRRIHDTYIDVKDKSERDAISAFLKLVSSPTSQGLYVVHIAAEMAPVAKVGGLGDVVAGLGKALQRRGHLVEIILPKYDCMQYDRVRDLRALDTVVESYFDGKLYKNKIWIGTVEGLPVHFIEPQHPSKFFWRGQFYGEKDDFKRFSYFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLDSARICFTCHNFEYQGTSSASDLGSCGLDVNQLNRPDRMQDHSSGDRVNPVKGAIIFSNIVTTVSPTYAQEVRTSEGGKGLHSTLNSNSKKFIGILNGIDTDSWNPATDPFLKAQFNARDLQGKEENKYALRKQLGLSSAESRRPLVGCITRLVPQKGVHLIRHAIYRALELGGQFVLLGSSPVPHIQREFEGIEQQFKSHDHVRLLLKYDEALSHSIYAASDMFIIPSIFEPCGLTQMIAMRYGSIPIARKTGGLNDSVFDIDDDTIPTQFQNGFAFQTADEQGLNYALERAFNHYKKDEEKWMRLMEKVMSIDFSWASSATQYEELYTRSVAKARASPNRT", "cigar": "3163D6M45D12M2D13MD6M24D4M6D21MDM45D4M12D18M8D2M9D3MD4MD13M58D26M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D17M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D6M349D", "taxon_id": 109376, "taxon_name": "Brassica oleracea var. oleracea", "assembly": "v2.1", "representative": { "id": "Bo8g050010", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 315, "end": 554, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 610, "end": 766, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 310, 327, 368, 394, 455, 520, 544, 656, 706, 727, 752 ] } ], "representative": { "id": "Bo8g050010", "score": -149.999156 } }, { "node_id": 4738200, "distance_to_parent": 0.005857, "left_index": 1077, "right_index": 1082, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 426013, "distance_to_parent": 0.004935, "left_index": 1080, "right_index": 1081, "protein_stable_id": "CDX76534", "gene_stable_id": "GSBRNA2T00126961001", "gene_display_label": "BnaA08g08660D", "sequence": "MTTTKLSSCFLTNGLVGISCKREHGGSPRFFYLPSRRLLPASCKIRQQRGFDSNKRQDIKKGSPEPILPISSSLQSNSDEEDSQPDNGSADTIHSTVETNHVDSSTENTDEDVQKSEVTRLKSKLTKKKESDGQDLNVLTVPEVAKALSINKSGGEQFSDGQFGELMTMIRNAEQNILRLDQARVSALAELSKILSEKEALQGEINVLEMKLAETDERIKTAAQEKVRVELLEEQLEKLRQEMVSPPPESDGYVLALSREIETLKIENLSLRNDIETLKSKLESVENTDERVVVLEKECSGLESSVKDLESKLLVSQEDVSKLSSLKTECSDLWTKVESLQMLLDRATKQAEQAVLVLQQNQDLKSKVEKIEESLKEANVYKESSEKIQQYNELMQHKVELLEERLEKSDAEIFSYVQLYQESIKEFQETLMRLKEESNRKEPRDEPVDDMPWDYWSRLLLTVDGWLLEKKIANDDADSLREMVWKKDRRIHDTYIDVKDKSERDAISAFLKLVSSPTSQGLYVVHIAAEMAPVAKVGGLGDVVAGLGKALQRRGHLVEIILPKYDCMQYDRVRDLRALDTVVESYFDGKLYKNKIWIGTVEGLPVHFIEPQHPSKFFWRGQFYGEKDDFKRFSYFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLDSARICFTCHNFEYQGTSSASDLGSCGLDVNQLNRPDRMQDHSSGDRVNPVKGAIIFSNIVTTVSPTYAQEVRTSEGGKGLHSTLNSNSKKFIGILNGIDTDSWNPATDPFLKAQFNAKDLQGKEENKYALRKQLGLSSAEPRRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVPHIQREFEGIEQQFKSHDHVRLLLKYDEALSHSIYAASDMFIIPSIFEPCGLTQMIAMRYGSIPIARKTGGLNDSVFDIDDDTIPTQFQNGFTFQTADEQGLNYALERAFNHYKKDEEKWMRLMEKVMSIDFSWASSATQYEELYTRSVARARASPNRT", "cigar": "431D5M92D3M103DM55D6M450D3M11D7M50D2M52D2M42D2M37D3MDM244D2MDM7D4M54D4M11DMD4M66DM52D8M55D10M8D5M163D7MD9M70D18M25D7M107D11M103D2M154D7M69D7MD4M65D4M6DMD4MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D13MD6M24D4M6D21MDM45D4M12D18M8D2M9D3MD4MD13M58D26M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D17M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D6M349D", "taxon_id": 3708, "taxon_name": "Brassica napus", "assembly": "AST_PRJEB5043_v1", "representative": { "id": "GSBRNA2T00126961001", "score": -50 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 524, "end": 763, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 819, "end": 974, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 52, 148, 176, 519, 536, 577, 603, 664, 729, 753, 865, 915, 936, 961 ] }, { "node_id": 425982, "distance_to_parent": 0.004364, "left_index": 1078, "right_index": 1079, "protein_stable_id": "Bra021017.1-P", "gene_stable_id": "Bra021017", "gene_display_label": "ATSS4", "gene_description": "AT4G18240 (E=0.0) ATSS4, SSIV, SS4 | ATSS4; transferase, transferring glycosyl groups ", "sequence": "MTTTKLSSCFLTNGLVGISCKREHGGSPRFFYLPSRRLLPASCKIRQQRGFDSNKRQDIKKGSPEPIIPINSSLQSNSDEEDSQPDNGSADTIHSTVETNRVDSSTENRDGDVQKSEVTRLKNKHTKKKESDGQDLNVLTVPEVAKALSINKSGGEQFSDGQFGELMTMIRNAEQNILRLDQARVSALAELSKILSEKEALQGEINVLEMKLAETDERIKTAAQEKVRVELLEEQLEKLRQDMVSPPPESDGYVLALSNEIETLRIENLSLRNDIETLKSKLESVENTDERVVVLEKECSGLESSVKDLESKLLVSQEDVSKLSSLKTECSDLWTKVESLQMLLDRATKQAEQAVLVLQQNQDLKSKVEKIEESLKEANVYKESSEKIQQYNELMQHKVELLEERLEKSDAEIFSYVQLYQESIKEFQETLMRLKEESNRKEPRDEPVDDMPWDYWSRLLLTVDGWLLEKKIANDDADSLREMVWKKDRRIHDTYIDVKDKSEREAISAFLKLVSSPTSQGLYVVHIAAEMAPVAKVGGLGDVVAGLGKALQRRGHLVEIILPKYDCMQYDRVRDLRALDTVVESYFDGKLYKNKIWIGTVEGLPVHFIEPQHPSKFFWRGQFYGEKDDFKRFSYFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLDSARICFTCHNFEYQGTSSASDLGSCGLDVNQLNRPDRMQDHSSGDRVNPVKGAIIFSNIVTTVSPTYAQEVRTSEGGKGLHSTLNSNSKKFIGILNGIDTDSWNPATDPFLKAQFNAKDLQGKEENKYALRKQLGLSSAEPRRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVPHIQREFEGIEQQFKSHDHVRLLLKYDEALSHSIYAASDMFIIPSIFEPCGLTQMIAMRYGSIPIARKTGGLNDSVFDIDDDTIPTQFQNGFTFQTADEQGLNYALERAFNHYKKDEEKWMRLMEKVMSIDFSWASSATQYEELYTRSVARARASPNRT", "cigar": "431D5M92D3M103DM55D6M450D3M11D7M50D2M52D2M42D2M37D3MDM244D2MDM7D4M54D4M11DMD4M66DM52D8M55D10M8D5M163D7MD9M70D18M25D7M107D11M103D2M154D7M69D7MD4M65D4M6DMD4MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D13MD6M24D4M6D21MDM45D4M12D18M8D2M9D3MD4MD13M58D26M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D17M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D6M349D", "taxon_id": 51351, "taxon_name": "Brassica rapa subsp. pekinensis", "assembly": "IVFCAASv1", "representative": { "id": "Bra021017", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 524, "end": 763, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 819, "end": 974, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 52, 148, 176, 519, 536, 577, 603, 664, 729, 753, 823, 865, 915, 936, 961 ] } ], "representative": { "id": "Bra021017", "score": -149.995636 } } ], "representative": { "id": "Bra021017", "score": -149.989779 } } ], "representative": { "id": "AT4G18240", "score": -174.973664 } }, { "node_id": 4738172, "distance_to_parent": 0, "left_index": 1041, "right_index": 1074, "taxon_id": 91835, "taxon_name": "fabids", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4738185, "distance_to_parent": 0.099633, "left_index": 1060, "right_index": 1073, "taxon_id": 3694, "taxon_name": "Populus trichocarpa", "node_type": "duplication", "bootstrap": 100, "duplication_confidence_score": 1, "children": [ { "node_id": 4738189, "distance_to_parent": 0, "left_index": 1067, "right_index": 1072, "taxon_id": 3694, "taxon_name": "Populus trichocarpa", "node_type": "gene_split", "duplication_confidence_score": 1, "children": [ { "node_id": 425903, "distance_to_parent": 0, "left_index": 1070, "right_index": 1071, "protein_stable_id": "POPTR_0095s00210.1", "gene_stable_id": "POPTR_0095s00210", "sequence": "VPNDVTGASVLVDSETSTSVDVERIEQLTDAQNPQRLTVSQEAKSLVFFLYLCNRISKFVFDRCFDTLLLNKARVFALDDLERIFHEKDKLQGEINVLEMRLAENDAKMKVAAQEKIRVELLEAQLEKLRNELAQRGATERSNSSVHSLSEELSLLRSENMSLKNDIEALREELSNVKNTDERVAILVKQHSLMKSSLQDLESKLIASEEDVSKLSSLKVECKDLWEKVDTLQALLDKATKRADQAILVLQQNQDLRKKVDKLEKSLEEAVVYKLSSEKLQQYNELMQQKMKLLEEHLQRSDEEIHSYVRLYQDSVQEFQDTLKSLKEESKKRALDEPIDDMPWEFWSHLLLIIDGWLLEKKISTDDAKLLREMVWKRDGRICEAYMESREKNEREAVSRFLKLTSSPKSSGLSIIHIAAEMAPVAKIVLPKYDCMQYDRIHNLRALDVVVESYFDGKLYKNKIWVGTVEGLPVYFIEPQHPEKFFWRGQFYGEHDDFRRFSFFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGTAPASELASCGLDVHQLNRPDRMQDNSAHDRVNPVKGAVVFSNIVTTVSPTYAQEVRTAE", "cigar": 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"MGASCCVLLKALLTTLTCLVQGGKGLHSTLSFHSKKFVGILNGIDTDAWNPATDTSLKVQYNVNDLQGKTENKIALRKFLGLSNADVRQPMVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAHIQREFEGIANHFESHHHIRLILKYDESLSHSIFAASDIFIIPSIFEPCGLTQMIAMRYGSIPIVRKTGGLNDSVFDVDDDTVPPQFRNGFTFSTPDEHVNK", "cigar": "4800D7M30D2M90D9M3D2M186D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM21D3M2268D", "taxon_id": 3694, "taxon_name": "Populus trichocarpa", "assembly": "JGI2.0", "representative": { "id": "POPTR_0095s00220", "score": 0 }, "domains": [ { "id": "IPR001296", "root": 1296, "start": 86, "end": 208, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 4, 91, 133, 183, 204 ] } ], "representative": { "id": "POPTR_0095s00210", "score": 0 } }, { "node_id": 4738187, "distance_to_parent": 0, "left_index": 1061, "right_index": 1066, "taxon_id": 3694, "taxon_name": "Populus trichocarpa", "node_type": "gene_split", "duplication_confidence_score": 1, "children": [ { "node_id": 425661, "distance_to_parent": 0, "left_index": 1064, "right_index": 1065, "protein_stable_id": "POPTR_0001s34580.1", "gene_stable_id": "POPTR_0001s34580", "gene_display_label": "POPTRDRAFT_591049", "gene_description": "Predicted protein", "sequence": "MQNFSQLLCFVKALLTTLLCLVQGGKGLHSTLSFHSKKFVGILNGIDTDAWNPATDTSLKVQYNVNDLQGKTENKIALRKFLGLSNADVRQPMVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAHIQREFEGIANHFVSHHHIRLILKYDESLSHSIFAASDIFIIPSIFEPCGLTQMIAMRYGSIPIVRKTGGLNDSVFDVDDDTVPPQFRNGFTFSTPDEHGVNSALDRAFNYYRNNTEVWQQLVQKDMNMDFSWELSTSQYEELYLKSVARARVATNRAQGL", "cigar": "4614D2M183D7M31D2M90D9M3D2M186D4M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D9M346D", "taxon_id": 3694, "taxon_name": "Populus trichocarpa", "assembly": "JGI2.0", "representative": { "id": "POPTR_0001s34580", "score": 0 }, "domains": [ { "id": "IPR001296", "root": 1296, "start": 88, "end": 239, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 93, 135, 185, 206, 231 ] }, { "node_id": 425890, "distance_to_parent": 0, "left_index": 1062, "right_index": 1063, "protein_stable_id": "POPTR_0001s34570.1", "gene_stable_id": "POPTR_0001s34570", "sequence": "MATKLSTCFLSHRLATALNCNAITTTTNDPKHTNVRFLLPCHRLPSSSSFRIRNRNSRQWLVSKKLNNLSSTPQAVNMGGGEQLSSIQLEDLIGMIRNAEKNTLLLNKARVFALDDLERIFHEKDKLQGEINVLEMRLAENDAKMKVAAQEKIRVELLEAQLEKLRNELAQRGATERSVFDLYESQNNVFSKEAPLLQNNTQLQNSSVHSLSEELSLLRSENMSLKNDIEALREELSNAKNTDERVAILVKQHSLMKSSLQDLESKLIASQEDVSKLSSLKVECKDLWEKVDTLQALLDKATNRADQAILVLQQNQDLRKKVDKLEESLEEAVVYKLSSEKLQQYNELMQQKMKLLEEHLQKSDEEIHSYVRLYQDSVQEFQDTLKSLKEESNKRALDEPIDDMPWEFWSHLLLIIDGWLLEKKISTDDAKLLREMVWKRDGRICEAYMESREKNEREAVSRFLKLTSSPKSSGLSIIHIAAEMAPVAKVGGLGDVVTGLCKALQKRGHLVEIVLPKYDCMQYDRIHNLRALDVVVESYFDGKLYKNKIWVGTVEGLPVYFIEPQHPEKFFWRGQFYGEHDDFRRFSFFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGTAPASELASCGLDVHQLNRPDRMQDNSAHDRVNPVKGAVVFSNIVTTVSPTYAQEVRTAE", "cigar": "432D4M92D3M103DM55D6M450D3M10D8M40D2M7DM54D8M37DM37D3MDM244D2M9D4M54D6M9DMD4M66D2M50D9M55D4M849D5M7D4MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D13MD6M2D53MDM45D4M12D18M8D2M9D3MD4MD13M58D26M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD2M3002D", "taxon_id": 3694, "taxon_name": "Populus trichocarpa", "assembly": "JGI2.0", "representative": { "id": "POPTR_0001s34570", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 477, "end": 706, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 58, 102, 472, 489, 530, 556, 617, 682 ] } ], "representative": { "id": "POPTR_0001s34580", "score": 0 } } ], "representative": { "id": "POPTR_0095s00210", "score": 0 } }, { "node_id": 4738174, "distance_to_parent": 0.098244, "left_index": 1042, "right_index": 1059, "taxon_id": 3814, "taxon_name": "Papilionoideae", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4738176, "distance_to_parent": 0.026743, "left_index": 1049, "right_index": 1058, "taxon_id": 163742, "taxon_name": "Trifolieae", "node_type": "duplication", "bootstrap": 0, "duplication_confidence_score": 0.5, "children": [ { "node_id": 426068, "distance_to_parent": 0, "left_index": 1056, "right_index": 1057, "protein_stable_id": "Tp57577_TGAC_v2_mRNA349", "gene_stable_id": "Tp57577_TGAC_v2_gene348", "sequence": "REFEGIANHFKNHDHIRLILKYDESLSHTIYAASDMFIIPSIFEPCGLTQMISMRYGAVPIVRKTGGLNDSVFDIDDDTIPSQFQNGFTFLNADEK", "cigar": "5598D7M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM2292D", "taxon_id": 57577, "taxon_name": "Trifolium pratense", "assembly": "Trpr", "representative": { "id": "Tp57577_TGAC_v2_gene348", "score": 0 }, "exon_junctions": [ 50, 71 ] }, { "node_id": 4738177, "distance_to_parent": 0.021467, "left_index": 1050, "right_index": 1055, "taxon_id": 163742, "taxon_name": "Trifolieae", "node_type": "speciation", "bootstrap": 44, "children": [ { "node_id": 425976, "distance_to_parent": 0.041345, "left_index": 1053, "right_index": 1054, "protein_stable_id": "Tp57577_TGAC_v2_mRNA5003", "gene_stable_id": "Tp57577_TGAC_v2_gene4839", "sequence": "LNVNRTEPAEQLSDGQLEDLLAMIKNAEKNILLINQARVRALEDLQKILSEKKVLQAEINVLEMRLAETDARIEVADQEKTRVELLEGQLEKLHSELARKGSDAELHDIQTGVLSDANDTISSLTEELNSIREENASLKNEIESFKTQLNDVKNNDERLVVLEKERLFLESALKDLESKLSISPEAVSELSTLKVECKYLSDKVENLQLLLDKATKQADQAVIVLQQNQDLQREVDKLEATLEEANIYKLSSDKLQKDNELMQRKIKLLENSLEKSDEDINSYVQLYQQSVNEFQDTLNILQKESKKKTLDEPVEDMPWEFWSQLLLLIDGWALEKKISLDDAKLLREKVWKKDKSISDIYLACKGQNEDEAISSLLGLTSSATSPGLHVIHIAAEMAPVAKVGGLGDVVCGLSKALQKKGHLVEIVLPKYDCMQYDRIGDIRALDVVIESYFDGQLFKNKIWVGTVEGLPVYFIEPHHPDKFFWRGDFYGERDDFRRFSYFSRVALEFLLQAGKKPDIIHCHDWQTAFIAPLYWDVYVPKGLNSARICFTCHNFEYQGTAPASELESCGLDSHHLNRPDRMQDNSAHNRVNSVKGGVVYSNIVTTVSPTYAQEVRTAEGGKGLQSTLSTHSKKFIGVLNGIDTDIWNPATDPFLDVQYNANDLQGKSENKEALRRKLGLSSEDVKRPLVGCITRLVPQKGVHLIRHAIYLTLELGGQFVLLGSSPVPHIQVIFSFLIAEI", "cigar": "2728D4M6D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D13MD6M2D3M4D14M11D21MDM45D4M12D18M8D2M9D3MD4MD13M58D26M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D8M65D6M2459D", "taxon_id": 57577, "taxon_name": "Trifolium pratense", "assembly": "Trpr", "representative": { "id": "Tp57577_TGAC_v2_gene4839", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 389, "end": 629, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 30, 385, 402, 443, 469, 530, 595, 619, 689 ] }, { "node_id": 425925, "distance_to_parent": 0.025059, "left_index": 1051, "right_index": 1052, "protein_stable_id": "KEH31364", "gene_stable_id": "MTR_4g094595", "gene_description": "starch synthase IV", "sequence": "MASKLATCFVCCNLSSGFNNCNNNYNQPTRRVMCSPFPSSCKIRHLRILSSQQQKRQYHKKTSSSSSSSSQPSSIDGGRTIDPKSNHDHSPHNSTPSALNVNGAEQAEQLSGGQLEDLLSMIKNAEKSKIFFWSTYILLINQARVRALEDLQKVLAEKKALQAEVNDLEMRLAETDARIEVADQEKTHVELMEGQLEKLRNELAEKGSTEESNAELHDLHNDRIHSLTEELNSVREENASLKNAIESFKIQLNDVKNNDERLVVLEKERLYLESTLKDLESKLSISPEDVSELSTLRVECKHLSDKVENLQLLLDKATEQANQAVIVLEENQDLQRKVDKLETSLEEANVYKLSSDKLLKYNELMQQKIKLLENSLQKSDEDINSYIQLYQQSVNEFQDTLDILKKESKRKTLDEPVEDMPWEFWSQLLLLIDGWTLEKKIAVDDAKLLREKVWKKDKSISDVYMACKGQNEDGAISAFLGLTSSATSPGLYVIHIAAEMAPVAKVGGLGDVVCGLSKALQKKGHLVEIVLPKYDCMQYDRIGDLRALDVVIESYFDGQLFKNKIWVGTVEGLPVYFIEPHHPDKFFWRGDFYGERDDFRRFSYFSRVALEFLLQAGKKPDIIHCHDWQTAFVAPLYWDIYAPKGLNSARICFTCHNFEYQGTAAASELESCGLDSHHLNRPDRMQDNSAHDRVNSVKGGVVYSNIVTTVSPTYAQEVRTAEGGKGLHSTLSTHSKKFIGVLNGIDTDIWNPATDPFLEVQYSANDLQGKAENKEALRKNLGLSSADVKRPLVGCITRLVPQKGVHLIRHAIYLTLELGGQFVLLGSSPVPHIQREFEGIANHFKNHDNIRLILKYDESLSHTIYAASDMFIIPSIFEPCGLTQMISMRYGAVPIARKTGGLNDSVFDIDDDTIPSQFRNGFTFLNADEKGIDGALVRAINLFRDDPESWKQLVQKDMNIDFSWDSSAAQYEELYLKSVTRGRAVKRT", "cigar": "432D4M92D3M103DM55D6M448DMD3M10D8M50D2M52D8M335D4M54D4M11DMD4M66D2M50D9M55DM4D5M8D5M163D6M2D2M77D6M278D4M117D2M19D2M78D4M4DM65D4M6D6MDM220D2MD3M13D5M16D2M7D3M10D3M61D2M5D4M7D14MD19M16D9M45D12M2D13MD6M2D13M12DM6D21MDM45D4M12D18M8D2M9D3MD4MD13M58D26M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 3880, "taxon_name": "Medicago truncatula", "assembly": "MedtrA17_4.0", "representative": { "id": "MTR_4g094595", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 493, "end": 732, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 787, "end": 908, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 50, 97, 136, 488, 505, 546, 572, 633, 698, 722, 792, 834, 884, 905, 930 ] } ], "representative": { "id": "MTR_4g094595", "score": -99.974941 } } ], "representative": { "id": "MTR_4g094595", "score": -99.953474 } }, { "node_id": 4738184, "distance_to_parent": 0.024355, "left_index": 1043, "right_index": 1048, "taxon_id": 3847, "taxon_name": "Glycine max", "node_type": "duplication", "bootstrap": 83, "duplication_confidence_score": 1, "children": [ { "node_id": 426033, "distance_to_parent": 0.020948, "left_index": 1046, "right_index": 1047, "protein_stable_id": "GLYMA08G08740.2", "gene_stable_id": "GLYMA08G08740", "gene_description": "Uncharacterized protein", "sequence": "MASKLRTCFMCWNLSGFNCVNHHNGRNRVVRVSFPASCEMRHRATFSSQHKRQQIKPSAEGGLRQNQDEEDDAAEVSLNNDDSVENLNDATAPLAININGAEQAEQLSGRQLEDLLGMIKNAEKNILLLNEARVRSLEDLEKILAEKEALQGEINVLETRLAETDAQIKVANQEKIHVELLEGQLEKLRNELAQKESTEGKYSELHDLQNGGLSDANPLSHNDSIHSLTEELNSLRAENASLKNTIESFKTQLSDTKNNDERLVALEKERSSLESALKDLESKLSISQDDVSKISTLTVEYKDLWDKVENLQSLLDKATKQADQAVIVLQQNQDLRRKVDKLEESLEEANIYKLSSDKLQKYSELMQQKLKLLEDRLQKTDEEINSYVQLYQQSVKEFQDTLDTLKEESKKGNLEEPVEDMPWEFWSQLLLLIDGWKLEKKISVDDASLLREKVWKRDRRIIDTYIACKKQSEQEAISAFLGLLSSATSPGLHVIHIAAEMAPVAKVGGLGDVVSGLGKALQKKGHLVEIVLPKYDCMQYDRVCDLRALDVLIDSYFDRQLYKNKIWVGTVEGLPVYFIEPHHPDKFFWRGEFYGERDDFRRFSFFSRAALEFLLRAGKKPDIIHCHDWQTAFIAPLYWEIFAPKKGLNSARICFTCHNFEYQGTAAASELESCGLESHRLNRKDRMQDNSSHDRVNSVKGGIVFSNIVTTVSPTYAQEVRTEEGGRGLHSTLSVHSKKLIGIINGIDTDAWNPATDAFLPVQYNATDLQGKAENKQALGRNLGLSSTDVRRPLVGCITRLVPQKGVHLIRHAIYLTLELGGQFVLLGSSPVPHIQKEFEGIANHFQNHDHIRLILKYDESLSHAIYAASDMFIIPSIFEPCGLTQMISMRYGAIPIVRKTGGLNDSVFDVDDDTIPSQFRNGFTFVNADEQGLNGALVRAFNLFNNNPEGWKQLVQKDMNIDFSWETSSAQYEELYLKSVARAKAAKGA", "cigar": "432D4M92D3M103DM55D6M450D3M11D7M50D2M52D2MD5M335D4M54D4M11DMD4M66D2M51D8M55DM4D5M8D5M163D5M82D6M278D4M117D2M19D3M74D7M4DM65D4M6D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D13MD6M2D26M6D21MDM45D4M12D18M8D2M9D3MD4MD13M58D26M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D12M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 3847, "taxon_name": "Glycine max", "assembly": "V1.0", "representative": { "id": "GLYMA08G08740", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 493, "end": 733, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 791, "end": 929, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 47, 94, 125, 489, 506, 547, 573, 634, 700, 724, 794, 836, 886, 907, 932 ] }, { "node_id": 426007, "distance_to_parent": 0.011968, "left_index": 1044, "right_index": 1045, "protein_stable_id": "GLYMA05G25790.1", "gene_stable_id": "GLYMA05G25790", "gene_description": "Uncharacterized protein", "sequence": "MASKLRTCFVCWNLSGFNCVNHHNANNNWVVRVSFPASCKMRHRATFSSQHKRQQIKPSAEGGLRQNQDEEDDTEVSLNNDDSVENLNDATAPLAININGAEQAEQLSGRQLEDLLVMIKNAEKNILLLNEARIRACEDLEKILVEKEALQGEINVLETRLAETDARITVANQEKIHVEFLEGQLEKLRNELAQKGSTERKYAELHDLQNDDLSDANPLSHNVSIHSLTEELNSLRAENASLKNAIESFKTQLSDVKNNDERLVALEKERSSLESALKDLESKLSISQDGVSQISTLTVECKDLWDKVENLQSLLDKATKQADQAVLVLQQNQDLRRKVDKLEASLEEANIYKLSSDKLQKYNELMQQKIKLLEDRLQKSDEEINSYVWLYQQSVKEFQDTLDTLKKESKKRNLEEPVEDMPWEFWSQLLLLIDGWTLENKISVDDASLLREKVWKRDRRISDTYIACKKQTEQEAISAFLGLLSSATSPGLHVIHIAAEMAPVAKVGGLGDVVSGLGKALQKKGHLVEIVLPKYDCMQYDRVCDLRALDVLIDSYFDRQLYKNKIWVGTIEGLPVYFIEPHHPDKFFWRGKFYGEHDDFRRFSFFSRAALEFLLQAGKKPDIIHCHDWQTAFIAPLYWDIYAPKGLNSARICFTCHNFEYQGTAAASELESCGLESHHLNRPDRMQDNSAHDRVNSVKGGIVFSNIVTTVSPTYAQEVRTSEGGHGLHSTLSAHSKKFIGILNGIDTDAWNPATDAFLPVQYNATDLQGKAENKQALRRNLGLSSTDVRRPLVGCITRLVPQKGVHLIRHAIYLTLELGGQFVLLGSSPVPHIQNEFEGIANHFQNHDHIRLILKYDESLSHVIYAASDMFIIPSIFEPCGLTQMISMRYGAIPIVRKTGGLNDSVFDVDDDTIPSQFRNGFTFVNADEQGLNGALVRAFNLFNNNPESWKQLVQKDMNIDFSWETSSAQYEELYLKSVARAKAAKLA", "cigar": "432D4M92D3M103DM55D6M450D3M11D7M50D2M52D8M335D4M54D4M11DMD4M66D2M51D8M55DM4D5M8D5M163D5M83D5M278D4M117D2M19D3M74D7M4DM65D4M6D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D13MD6M2D26M6D21MDM45D4M12D18M8D2M9D3MD4MD13M58D26M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 3847, "taxon_name": "Glycine max", "assembly": "V1.0", "representative": { "id": "GLYMA05G25790", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 493, "end": 733, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 790, "end": 931, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 48, 94, 125, 489, 506, 547, 573, 634, 699, 723, 793, 835, 885, 906, 931 ] } ], "representative": { "id": "GLYMA05G25790", "score": 0.011968 } } ], "representative": { "id": "MTR_4g094595", "score": -99.926731 } } ], "representative": { "id": "MTR_4g094595", "score": -99.82848700000001 } } ], "representative": { "id": "AT4G18240", "score": -174.789823 } }, { "node_id": 4738201, "distance_to_parent": 0.008144, "left_index": 1030, "right_index": 1039, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 426010, "distance_to_parent": 0.089735, "left_index": 1037, "right_index": 1038, "protein_stable_id": "EOY27766", "gene_stable_id": "TCM_029533", "gene_description": "Starch synthase 4 isoform 1", "sequence": "MSAKLSTCFFNHGFISLNYNNNSKKNVISYKKHVNLRLLFVPSRRLLPASCKMRQKNFSSQNKRPQGKKLPSEQIPTSAKLQPNSDEESEPENSVPNSVDMEHIVQNETLYEDDVNTRVDVEYINEQNLGTLSVSAIETNRDVEHTDGQNLDSLTLPAVTKALAINRDGGEQLSGVLLEDLIGMIKNAERNILLLNQARVHALEDLHKILSEKESLQGEINILEMRLAEADARIKVASQEKIHVELLEDQLEKLRNELIHRGGSGKSELELYENQNKISKEEMLLACDRHVHSLSKEVDSLRTENLALKHDIQALKSMLSNVKDTNEHMVTLENERSFLESALKELESKLSVSQQDSSNISALKVECKDLWAKVENLQLLLDKATKQADQAISVLQQNHDLRKKVDKLEESLEDANVFKLSSEKMQHYNELMQQKMKLLEERLQKSDQEIHSYVQLYQESVQEFQETLDSLKEESKKRALDEPVDDMPWEFWSHLLLTIDGWVLEKKISSSDANLLREFVQKRDRRIHDAFMACKEKNEREVISKFLHLTSSQASPGLYVIHIAAEMAPVAKVGGLGDVVTGLGKALQKKGHLVEIVLPKYDCMQYDRIRDLRALDVTVESYFDGKLFQNKVWVGTVEGLPVYFIEPHHPNKFFWRGQCYGEHDDFKRFSFFSRAALELLLQAGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGSASASELASCGLDVQQLNRPDRMQDNSANDRVNPVKGAIVFSNIVTTVSPTYAQEVRTAEGGRGLHSTLNFHSKKFMGILNGIDTDAWNPATDTFLKVQYSANDLQGKAENKAAMRRHLGLSSADDRQPLVGSITRLVPQKGMHLIRHAIYRTLEMGGQFVLLGSSPVAHIQREFEGIANQFQNHDHIRLILKYDESLSHYIYAASDMFIIPSIFEPCGLTQMIAMRYGSVPIARQTGGLKDSVFDVDDDTIPHQFQNGFTFMTPDEQGVNSALERAFNLYKHDKASWQRLVQKDMNIDFSWDSSASQYEELYAKSVARARAAASHT", "cigar": "432D4M92D3M103DM55D3M453D3M11D7M50D2M52D10M29D2MD4M37D3MDM244D2MDM7D4M54D4M11DMD4M66DM52D8M55D4MD5M8D5M163D6M2D5M74D18M25D6M111D8M103D12MD4M117D2M19D8M69D7MD4M65D4M6DMD4MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D13MD6M2D26M6D21MDM45D4M12D18M8D2M9D3MD4MD13M58D26M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D6M349D", "taxon_id": 3641, "taxon_name": "Theobroma cacao", "assembly": "Theobroma_cacao_20110822", "representative": { "id": "TCM_029533", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 560, "end": 799, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 854, "end": 1008, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 59, 163, 191, 555, 572, 613, 639, 700, 765, 789, 859, 901, 951, 972, 997 ] }, { "node_id": 4738202, "distance_to_parent": 0.012539, "left_index": 1031, "right_index": 1036, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 426027, "distance_to_parent": 0.098328, "left_index": 1034, "right_index": 1035, "protein_stable_id": "EMJ14902", "gene_stable_id": "PRUPE_ppa000758mg", "gene_display_label": "ATSS4", "gene_description": "starch synthase 4", "sequence": "MAVRLTTWFVSQRISISGSSSNSKRSNSNSRFSFHYSPASSCKLRHRNLSCNCVNKRQKLKKKDAVEQSSATTDFQFNSDDDSESESASVGIVPVLNPESVSDDEAHANNANDSISNALAPSDQTNPSAYNTQDLVGMIRNAEKNIHLLNRARVNALQDLDKILGEKEALQGEMNALEMKLAETDARIRVAAQEKIKVELLGDQLDKMQNELRLNGGGAERGEVVEIFENENELFNEEAPLPYRNSINALMANLNSLRLENVSLKNDVEELREELSNVKNTDERVVMLEKQRSSLESALKELESKLSVSQEDVSKLSNLKVECKGLWDKVENLQLLLDKATKQADQAIIVLQQNQEIRKKVDKLEESLEEANVYKQSSEKMQQYNELMQQKIKLMEERLQKSDEEIHSYVQLYQESVEEFQDTLNTLKEESKRRALDEPVDDMPWEFWSRLLLIIDGWLFENKISIDDAKVLREMVWKRDRRIHDSYMACKEKNVHEAVSTFLRLTSSQTSPGLHVVHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVIPKYDCMQYDFVRDLRALDVVLESYFDGRLFKSKVWVGTVEGLPVYFIEPLHPDRFFWRGQFYGERDDFKRFSFFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGTAPASELGSCGLDVNQLNRPDRMQDNSSHDRINAVKGAVVFSNIVTTVSPTYAQEVRTAEGGHGLHSTLNFHSKKFIGILNGIDADAWNPATDAHLKVQYNANDLQGKAENKEDIRRNLGLSSADVRRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVHHIQREFEGIANHFENHDHIRLILKYDDSLSHSIFAASDMFIIPSIFEPCGLTQMIAMRYGSIPIVRKTGGLNDSVFDVDDDTIPVQFRNGYSFLSADERGVNGALERAFDLYTRKPDSWQQLVEKVMNMDFSWDSSASQYEELYSKSVARARAAARTQAI", "cigar": "432D4M92D3M103DM55D6M448D5M10D8M50D2M52D8M335D4M54D4M11DMD4M66D2M50D9M55D10M8D5M163D6M2D2M77D18M25D5M233D2MD4M117D2M19D5M2DM69D7M4DM65D3M255D4M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D13MD34M6D21MDM45D4M12D18M8D2M9D3MD4MD13M58D26M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D8M347D", "taxon_id": 3760, "taxon_name": "Prunus persica", "assembly": "Prupe1_0", "representative": { "id": "PRUPE_ppa000758mg", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 515, "end": 755, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 811, "end": 929, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 50, 128, 145, 511, 528, 569, 595, 656, 721, 745, 815, 857, 907, 928, 953 ] }, { "node_id": 425774, "distance_to_parent": 0.093142, "left_index": 1032, "right_index": 1033, "protein_stable_id": "VIT_10s0003g02880.t01", "gene_stable_id": "VIT_10s0003g02880", "gene_display_label": "ATSS4", "gene_description": "Putative uncharacterized protein", "sequence": "MAAKLSTCFLSHGWGSLDCKRSNGRFLAPSHRLLPASCKMRHRNFSSQHKRQQTKKVSPDRRPTNSHFQSNGDEDTEPENALADGVSSLNQGTTPDDEDADVDSHIAIEHINDNPLKHLTVSEEMTPLGINVKSGEQLSSFQLEDLVGMLKNAEKNILLLNQARVRALQDLEKILTEKDALQGEINILEMRLAETNARIKVAAQEKIHVEILEEQLVNLRNELSHRGVTEGSGADMHENWNKAFDGVHSLGKELSLLRTENVSLKDDILALKEELSHVQKTDKRVVMLEKERSFLESALKELEFKLVASQEDVSKLSTLKFECKNLWDRVENLQVLLDRATDQADKAILVLEQNQELRKKVDMLEESLEEANVYKLSSEKMQQYNDLMQKKIKLLEERLDRSDEEILSYVKLYQESIKEFQDTLNNLKEESKRRALNEPVDDMPWDFWSRLLLIIDGWLLEKKISANDAKLLREMVWKRDGRIRDAYLVCKDTNEHEAVAIFLKLTSSPKRSRLHVIHIAAEMAPVAKVGGLGDVVSGLSRALQKKGHLVEIVLPKYDCMQYDRIRDLRVLDMELESYFDGRLFRNKVWVGTVEGLPVYFIEPHHPSKFFWRGTVYGEHDDFRRFSYFSRAALELLLQAGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGTAPASEMASCGLDVHHLNRPDRMQDNSAHDRVNPVKGAIVFSNIVTTVSPTYAQEVRTSEGGRGLHSTLNSHSKKFIGILNGIDTDAWDPATDVYLKSQFNANDLQGKAENKEALRKHLGLSYADTRRPLVGCIARLVPQKGIHLIRHAIYRTLELGGQFVLLGSSPVPHIQVEFEGIANHFKGDDHIRLILKYDESLSHSIYAASDMFLIPSMFEPCGLTQMIAMRYGSIPIARKTGGLNDSVFDVDDDTIPLQFRNGYTFLNPDEQGLNGALERAFNHYKTNKESWQKLVKKDMNIDFSWESSALQYEEIYEKSVARARATSLV", "cigar": "432D4M92D3M103DM55D5M451D3M10D8M148D2M37D3MDM244D2MDM7D4M54D4M11DMD4M66DM52D8M55D4MD5M8D5M163D6M2D10M76D11M25D6M235D4M117D2M19D8M69D7MD4M65D4M6DMD4MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D13MD6M2D18M15D20MDM45D4M12D18M8D2M9D3MD4MD13M58D26M4D4M12D3M38D3M19D6M42D12M5D37M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M23D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D5M350D", "taxon_id": 29760, "taxon_name": "Vitis vinifera", "assembly": "IGGP_12x", "representative": { "id": "VIT_10s0003g02880", "score": -50 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 515, "end": 755, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 810, "end": 966, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 46, 128, 156, 511, 528, 569, 595, 656, 721, 745, 815, 857, 907, 928, 953 ] } ], "representative": { "id": "PRUPE_ppa000758mg", "score": -149.901672 } } ], "representative": { "id": "PRUPE_ppa000758mg", "score": -149.889133 } } ], "representative": { "id": "AT4G18240", "score": -174.777036 } } ], "representative": { "id": "AT4G18240", "score": -174.75171500000002 } } ], "representative": { "id": "AT4G18240", "score": -174.71827000000002 } } ], "representative": { "id": "AT4G18240", "score": -174.65674800000002 } }, { "node_id": 4738207, "distance_to_parent": 0.052103, "left_index": 1000, "right_index": 1025, "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "node_type": "duplication", "bootstrap": 33, "duplication_confidence_score": 1, "children": [ { "node_id": 4738208, "distance_to_parent": 0.32991, "left_index": 1011, "right_index": 1024, "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "node_type": "duplication", "bootstrap": 93, "duplication_confidence_score": 1, "children": [ { "node_id": 425981, "distance_to_parent": 0.134654, "left_index": 1022, "right_index": 1023, "protein_stable_id": "PP1S104_147V6.1", "gene_stable_id": "PP1S104_147V6", "sequence": 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"432D4M92DM1074D2M1410D3M10D3M61DM41D10M16D9M45D3M70D5MD10MD5M41D4M12D10M36D5M84D6M211D9M65D6M471DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D6M67D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD3MD5M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D6M21D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7D25M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM326DM255DM11D2M181D3M204DM404D9M115D9M118DM33D8M63D", "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "assembly": "ASM242v1", "representative": { "id": "PP1S104_147V6", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 101, "end": 321, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 375, "end": 508, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 19, 42, 97, 114, 155, 159, 223, 287, 311, 383, 425, 475, 496, 541, 601 ] }, { "node_id": 4738209, "distance_to_parent": 0.029444, "left_index": 1012, "right_index": 1021, "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "node_type": "duplication", "bootstrap": 57, "duplication_confidence_score": 1, "children": [ { "node_id": 425987, "distance_to_parent": 0.103574, "left_index": 1019, "right_index": 1020, "protein_stable_id": "PP1S302_43V6.1", "gene_stable_id": "PP1S302_43V6", "sequence": "MSLDSNRLRHTRSEEVPVKVASANRLDAVLPQRQQRTVASDQLVLGNNVLLPSRYRDGVSASLRRIPPAPPSVRERQVENIVASFLGSLERPLPEKRPLYHVVHLATEIAPVAKVGGLADVVTGLGKALQEKHHRVEIIIPKYKTLDTSLIKNFKKLEKHFFSYFDGAEHENVVWTGFVEGLRVYFIDPLHPAGFFNRGRIYCEPDDFKRFTYFSRASLEFLLQFGKRPHLIHCHDWPVAVVAPMYKFIYANAGLRAKIALTCHNFEPQGKESMEALMSCGIQFKAPLHKDHFQDNILADKINVLKSGLLHSDFITTVSPTHAREVLTPEGGEGLHTTLRSLTKKFYGIVNGIDDKVWDPATDSHLEHHFTADDLKGKELLKNKLRLRLGMAIQGIDARRPLVCCVSRLVPQKGVFLLRSAIFHTLNRGGQFILQGTSQIPEIKKEFDELAQQFEDHPHVRLILRCDETLTHNIFAAADIFVIPSMFEPCGLTQMYSMRYGTIPVVRKTGGLADSVFDVDQKYVAEEKRNGFTFNEPTEEALASTLDRAFWYFKEQPQWWKSLIQKVMRIDLSWDAAPIDQYLKLYEHTVEDGHPPASIS", "cigar": "432D4M92DM1074D2M1410D3M10D3M61DM41D10M16D9M45D3M70D5MD10MD5M41D4M12D10M36D5M84D6M211D9M65D6M471DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD3MD5M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D6M21D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM326DM255DM11D2M181D3M204DM404D5M351D", "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "assembly": "ASM242v1", "representative": { "id": "PP1S302_43V6", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 101, "end": 340, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 394, "end": 547, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 19, 42, 97, 114, 155, 242, 306, 330, 402, 444, 494, 515, 540 ] }, { "node_id": 4738213, "distance_to_parent": 0.036971, "left_index": 1013, "right_index": 1018, "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "node_type": "duplication", "bootstrap": 61, "duplication_confidence_score": 1, "children": [ { "node_id": 426003, "distance_to_parent": 0.121034, "left_index": 1016, "right_index": 1017, "protein_stable_id": "PP1S104_136V6.1", "gene_stable_id": "PP1S104_136V6", "gene_description": "Predicted protein", "sequence": "MSVEAKRFRNVVAEESPIQVTSVQRLEMAMPHLNQETFTSDHQLMMGNNVLLSSHYGNGVAAPSRLVTPATYVASSPEKQVENLVAALVGSLERPLPMKRPRYHVVHLASEMAPVAKVGGLGDVVTGLGRALQNRKHRVEIIIPKYKTLDTSGIKHFKELNKHFFSYFEGAMHENVVWTGLVEGLRVYFIDPLHPAEFFNRGGIYCEPDDFQRFTYFSRASLEFLLQFGKRPNLIHCHDWPVAVVAPLCKSIYANAGLNAKLAFTCHNFEPQGKNSMEALTTCGLQFQAPLYQDDFQDNVYADQINVLKGGLMHSDFVTTVSPTYAKEVLTPEGGEGLHTTLRAMTKKFYGVMNGIDDKVWNPATDPHLMHHFSKDNVEGKKVLKDTLRLSLGMATEGVDANRPLVCCVSRLVYQKGVHLLRSAIFHSLDCGGQFILQGTSQDPVIKKDFDDLAKQYENHPHVRFVLRYEETLTHNIYGAADIFVIPSIFEPCGLTQMYSLRYGTIPVVRKTGGLADSIFDVDQKHVPVEKRNGFTFTESTEEALASALDRAFHYYREQPEWWTKLVSKVMHIDMSWDAAPIDQYLKLYTHTIEDGHPPASIS", "cigar": "432D4M92DM1074D2M1410D3M10D3M61DM41D10M16D9M45D3M70D16MD5M41D4M12D11M33DMD5M84D6M211D9M65D6M471DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD3MD5M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D6M21D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM326DM255DM11D2M181D3M204DM404D5M351D", "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "assembly": "ASM242v1", "representative": { "id": "PP1S104_136V6", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 104, "end": 343, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 398, "end": 554, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 19, 43, 100, 117, 158, 245, 309, 333, 405, 447, 497, 518, 543 ] }, { "node_id": 425965, "distance_to_parent": 0.082221, "left_index": 1014, "right_index": 1015, "protein_stable_id": "PP1S302_51V6.1", "gene_stable_id": "PP1S302_51V6", "gene_description": "Predicted protein", "sequence": "MSIETKRFRNSGAEESPVQVASAKQLEMALPQRSQETLASGHQLLMGNNELLSSFGNGVNVPSRRITPASCGAAIPQTQVKNLVAALVGSLECPPTVKRPRYHIVHLASEMAPVAKVGGLGDVVTGLGRALQKKHHRVEIIIPKYKTLDMSGIKNFKKLNKHFYSYFEGAEHENMVWTGVVEGLRVFFIDPLHPAEFFNRGGIYCEPDDFKRFTYFSRASLEFLLQFGKRPHLIHCHDWPVAVVAPLCKSIYSSAGLTSKLAFTCHNFEPQGKESMEALTSCGLQFQAPLHTDHFQDNISADRINVLKGGLVHSDFVTTVSPTYAKEVLTPEGGEGLHTTLRAMTKKFYGVVNGIDDTVWNPATDPHLEEHFSMDDLKGKEVLKNKLRLRLGLANLGIDAKRPLVCCVSRLVPQKGVHLLRSAIFHTLNRGGQFILQGTSQDPVIKKDFDELAQQFENHPHVRLVLRYEETLTHNIYGAADIFVIPSIFEPCGLTQKGVPSLRYLSNEIAGTQMYSMRYGTIPVVRKTGGLADSVFDVDQKHAVVEKRNGFTFSEPTEEALASALDRALLYYKEHPDWWKALVSKVMRIDMSWDAAPIDQYIKLYEHTVQEGHPPASIS", "cigar": "432D4M92DM1074D2M1410D3M10D3M61DM41D10M16D9M45D3M70D16MD2MD2M41D4M12D11M33DMD5M84D6M211D9M65D6M471DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD3MD5M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D6M21D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D33M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12D6M3DM14DM218DM13DM326DM255DM11D2M181D3M204DM404D5M351D", "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "assembly": "ASM242v1", "representative": { "id": "PP1S302_51V6", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 103, "end": 342, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 396, "end": 572, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 19, 43, 99, 116, 157, 244, 308, 332, 404, 446, 496, 513, 534, 559 ] } ], "representative": { "id": "PP1S302_51V6", "score": 0.082221 } } ], "representative": { "id": "PP1S302_43V6", "score": 0.103574 } } ], "representative": { "id": "PP1S302_43V6", "score": 0.133018 } }, { "node_id": 4738219, "distance_to_parent": 0.207549, "left_index": 1001, "right_index": 1010, "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "node_type": "duplication", "bootstrap": 43, "duplication_confidence_score": 1, "children": [ { "node_id": 426060, "distance_to_parent": 0.093881, "left_index": 1008, "right_index": 1009, "protein_stable_id": "PP1S2_195V6.1", "gene_stable_id": "PP1S2_195V6", "sequence": "MPASTANRESTGVSVNDLMLLVKEAETNIRTLSQLRERAVNELQTARNEKEELQSQVQILKARLAESEAKLKYTVQARERTQLLEEEVEALRQGLAQTEVDSQAFATLKEENRVMKESLTALKQAGGNGLLEAKYQSSLDEVNSLRVQLADAQAEITKFSRGTGRERAGLQEYIVGLEKKIADMEKQLAEANANSAELKSLEDESMALQEEAAALRAQLAGRSDSSSSSEDQTLQRQVDSLKSLLARAVAEKNALLDLRSENLRLREQVKLLEERIRESDAEIQAQLQIYTAEVEAFQASLNDLKSENETSVVQVPVDEMTWDFWSELLLRIDALMLGDLLTQEDAKELHLMAWRREKRLCDVYVNLADEPDEDLVGAFQELLQPKKRPGIYVIHIAAEMAPVAKVGGLGDVLTGLSRSLQRKGHLVEAILPKYDCMDYSRISNLKELDLELHSSFDGQTHKNKVWSGIVEGLPVYFIEPLHPAKFFWRGQFYSEPDDFRRFTYFCRAAMEFLLQSGKRPDIIHSHDWQTAVVAPLYWDVFVPLGLDSARLAFTCHNFEYQGAENSGAIAACGLSPQTLMRPDRMQDNSHHNKINLLKGGVVFSNVVTTVSPTYAQEVLRPEGGKGLHGTLGVHSKKFFGVLNGIDQEVWDPATDTLIDCQYSAHDIDGKFVNKQRLRERLGLASEGEDERRPLVGCVTRLVPQKGVHLIRHAIYRTLEKGGQFILLGSSPVPHIQHEFEGIARQFENHPQIRLVLKYDEALSHAIYAASDIFVIPSIFEPCGLTQMISMRYGTIPVVRRTGGLADSVFDVDDERNPEEKKNGFVFDDANEGSLNWGLDRALDYYSQRPEWWQDLVKKAMLIDFSWDTSADQYVDLYKQVLSKANA", "cigar": "2730D2M6D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D13MD6M31D24MD11M29D10M12D28M9D3MD4MD13M58D26M4D4M13D2M38D3M19D2M46D12M5D37M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D6M21D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610DM354D", "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "assembly": "ASM242v1", "representative": { "id": "PP1S2_195V6", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 393, "end": 631, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 685, "end": 844, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 28, 61, 237, 343, 388, 405, 446, 472, 533, 598, 622, 694, 736, 786, 807, 832 ] }, { "node_id": 4738222, "distance_to_parent": 0.026272, "left_index": 1002, "right_index": 1007, "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "node_type": "duplication", "bootstrap": 43, "duplication_confidence_score": 1, "children": [ { "node_id": 425790, "distance_to_parent": 0.112284, "left_index": 1005, "right_index": 1006, "protein_stable_id": "PP1S38_153V6.1", "gene_stable_id": "PP1S38_153V6", "gene_description": "Predicted protein", "sequence": "MSTTVALGIGSITTFVRVFPHNFFSFGQMKHGCRVSLEDAATVSRCGSFRFLFTPLSTTCGIRSRNSSSKRDQVKRMRGRQSRSEVNNRMGRHGRDGPTTVQDIQKLATAAEESLPLGDGGGLCFLESSAPNGASNVEDEEKGGNGAFSGIPAEVVFVFGGCAISEVRCRSLNPRLLLLKKVLGSFVYDFLQYLIFSICDFVKADSLKSLLAQAIIEKNAISKERSENIRLHERVEPLKERLRESDTKILAQLRTYREDVEASQASIHELTSENESSVAQIPVQEMPWDSWRGLLLRIDALSDFLSQKVTKELQSVAWRREKRLRDIYVSFADEADEELVSEFMNLLQPKKRPGLHVIHIAAEIAPVAKVGGLGDVLTGLCRSLQKKGHLVEAILPKYDCMDYSRIINLRELDLELPSFFDGHMHKNKVWSGIVEGIPVYFIEPLHPAKFFRRGEYYAEPDDFRRFTYFSRAAMEFILQSGKRPDIIHSHDWQTSVVAPLYWNVYVPLGLDSARLAFTCHNFLYQGIENSEAIAACGLTVQDLMSPDQMQDNFFHNKINLLKGAIVFSNVVTTVSPTYAQEVLSPEGGKGLHGTLGAHSKKFFGILNGIDVEVWNPATDTLIDYQFTADNIDGKFVNKQKLRERLGLGNQGGDERRPLVGCVTRLAPQKGVHLIKHAIHRTLEKGGQFILLGSSNLPEVQHEFEVIARQFENHPQIRLVLKYDETLSHAIYSAADVFVIPSIFEPCGLTQMISMRYGTIPVVRRTGGLADSVFDVDDERIPQEKKNGFVFDDANEGSFNSGLDRALNYYIQRPEWWQDLVRKAMLVDFSWDSSADRYVDLYRLVLK", "cigar": "432D4M92D3M102D6M5D4M37D11M448D6M9D8M275D3M142D3M13D4M4D7M54D4M11DMD2M120D9M55D11M7D5M163D7MD22M54D17M29D6M454D7M72D2M502D7MD6M31D4M10D10MD11M77D2M9D3MDM5D7M229D3M5D37M8D25M65D6MD10M26D9M338D7M3D6M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D6M21D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M1149D", "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "assembly": "ASM242v1", "representative": { "id": "PP1S38_153V6", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 356, "end": 595, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 653, "end": 807, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 68, 154, 307, 352, 369, 410, 436, 497, 562, 586, 658, 700, 750, 771, 796 ] }, { "node_id": 425887, "distance_to_parent": 0.091342, "left_index": 1003, "right_index": 1004, "protein_stable_id": "PP1S22_124V6.1", "gene_stable_id": "PP1S22_124V6", "sequence": 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"cigar": "432D4M92D3M102D6M5D4M37D11M448D6M9D8M275DM368D9M55D11M7D5M163D7MD22M54D17M29D6M454D7M67D7M6D6MDM220D2MD3M13D5M16D2M7D3M10D3M61DM20D11MD19M16D9M45D12M2D13MD6M31D24MD11M29D10M12D28M9D3MD4MD13M58D26M4D4M12D3M38D3M19D7M41D12M5D37M8D25M65D6MD10M26D9M338D8MD7M7D22M8D22M8DM3DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D8M34D7M2D4M3DM33D2M5D4M2D7M3D13M7D4M3D7M20D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M30D13M6D16MD5M6D10M7D14MD11M21D2M6D5M39D4MD5M8D5M4D6M21D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D4M17D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM14DM218DM13DM326DM255DM11D2M181D3M610D4M351D", "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "assembly": "ASM242v1", "representative": { "id": "PP1S22_124V6", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 530, "end": 770, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 827, "end": 981, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 45, 131, 160, 193, 375, 481, 526, 543, 584, 610, 671, 736, 760, 832, 874, 924, 945, 970 ] } ], "representative": { "id": "PP1S22_124V6", "score": 0.091342 } } ], "representative": { "id": "PP1S2_195V6", "score": 0.093881 } } ], "representative": { "id": "PP1S2_195V6", "score": 0.30143000000000003 } } ], "representative": { "id": "AT4G18240", "score": -174.456903 } } ], "representative": { "id": "AT4G18240", "score": -174.38264900000001 } }, { "node_id": 4737818, "distance_to_parent": 0.136431, "left_index": 956, "right_index": 997, "taxon_id": 33090, "taxon_name": "Viridiplantae", "node_type": "speciation", "bootstrap": 96, "children": [ { "node_id": 4737821, "distance_to_parent": 0.297675, "left_index": 963, "right_index": 996, "taxon_id": 58023, "taxon_name": "Tracheophyta", "node_type": "speciation", "bootstrap": 99, "children": [ { "node_id": 425762, "distance_to_parent": 0.269264, "left_index": 994, "right_index": 995, "protein_stable_id": "EFJ33601", "gene_stable_id": "SELMODRAFT_452998", "gene_description": "Starch synthase", "sequence": "MASVLPLGQILCGREISAGNIGARGLPLRVRVSFIGSSRRKSSKYDHYFASSNVDLESAEEKIQRLTATVERLKARIAELEGLVPSTRSRVEESMEQQPTPKQLLKSITMNVPVLKPEPSQKLGEIDRLPSIVWPSPSDEIPFWKRGRLRHEVAGLGSTKDVENDRNPLYIIHVTAEMVPLAKVGGLGDVVTGLSRACIDRGHKVEIMIPFYECIPGEQIKGFSPGESYSSYHKGNWISVQVYRGKIAGASVLLVQPKNQFFKGSSIYGGSYDELEAYLFFSRACLEWMQVTNNHPDIIHAHEWHTGAVSMLYWDMYHHLSLKKPRLVLTIHNMEHYGECRMEQLNMCGLEGSTYRTSDKAVDDRTIGHNPERLSLLKGGIVYSNAVTTVSPSYVNETLCSGWLSSTLMKHRSKYFGILNGIDTELWNPETDPYLPVGFSATDLMGKQACKQYLQRGLGLEPDELPTQRKTYQECKRSPLIVCITRLVAQKGIHLIRHAMYHVDQMDGQFVLLGTSRDPRVKGEFEHHATKVCLLCSEELAHLLYAAADIVLVPSMFEPCGLTQMIGMRYGAIPVVRKTGGLADTVFDVEHSKAIDANGFVFEGIDERSLNSALDRALQQFREKPHHWQALVSKVMLLDNSWNKSAREYVGVYNSVRV", "cigar": "432D2M2573DM7D3M6D3M88D9M118D6M22D4M4DM7D13M3DMD8M38D4M6D17M122D10M4D4M141D8M15D6M13D27M62D6M8D6M28D7M336DM10D8M38D8M20D2M2DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D10M28D4M9D4M3DM33D2M5D4M2D7M3D11M9D4M3D8M19D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M11D4M15D13M6D16M10D12M7D14MD11M21D2M6D5M39D4MD5M8D5M4D15M12D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2DM14DM6D7M16D9M3D9M11D6M17D10M33D11M4D13MDM27D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M12D2M16DM3DM4D2M12DMD4M3DM14DM218DM13DM582DM11D3M1148D", "taxon_id": 88036, "taxon_name": "Selaginella moellendorffii", "assembly": "v1.0", "representative": { "id": "SELMODRAFT_452998", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 171, "end": 398, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 467, "end": 628, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 110, 290, 323, 341, 360, 388, 414, 441, 506, 532, 572, 599, 624 ] }, { "node_id": 4737823, "distance_to_parent": 0.223807, "left_index": 964, "right_index": 993, "taxon_id": 3398, "taxon_name": "Magnoliophyta", "node_type": "speciation", "bootstrap": 49, "children": [ { "node_id": 425754, "distance_to_parent": 0.134282, "left_index": 991, "right_index": 992, "protein_stable_id": "ERN12576", "gene_stable_id": "AMTR_s00025p00214840", "gene_description": "hypothetical protein", "sequence": "MEPLPTLVQTTPINKLATNSSVHVSNFNAIRNVKHIQKFQRRLSLENRKSYGFKHQVYIGVSTLDSSGHPIKKVRVANHSSLVTGFNLNDFSWPSPNDEIAFWKKHFRSWDVTSHYVDNVVKDTDVMHIIHVTAEMAPIAKVGGLGDVVTGLSRACLLRGHKVEIMLPFYECIQKQQIEDLCEDGTYNSFHNGNWVSIRAYRGAVSGIPVILIQPSNHFFKGPSVYGGSYNELEAYLFFSRACLEYIQVYGTQPDVMHVHEWQTGALPILYWDMYHNLSIKKPRLVLTIHNLEYYGECRVEQFSMCGLDGSFYATVEKAADDRTIGHNPERLSLLKGGIVYSNAVTTVSPTYLKETLCSGWLASTLIRHHEKYLGILNGIDIALWNPATDVFLPANFHEQNIEGKLICKHYIQRGLGLDPECSVRGGCLQHNVRKPLVICITRLVAQKGLHLINSAIQHIQEIGGQMVLLGKAPDARVNHEFEYLASVYNGGCNIRVLLTYSEELSHMLYAAADMVLVPSMYEPCGLAQMIGMRYGAVPIVRKTGGLADTVFDMDDQANLDKANGFVFEGIDEGSLKFTLERAFRYYKERSTMVVAA", "cigar": "3015D3M6D10M58D2M19D11M118D2M34DM7D17MD8M38D2M11D11M126D9M7DM141D8M15D4M107D3M8D6M28D7M336DM10D8M39D7M20D2M2DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D10M28D4M9D4M3DM33D2M5D4M2D7M3D11M9D4M3D8M19D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M11D4M15D13M6D16M10D12M7D14MD11M21D2M6D5M39D4MD5M8D5M4D15M13D6M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D15M27D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5M71D5M10DM2078D", "taxon_id": 13333, "taxon_name": "Amborella trichopoda", "assembly": "AMTR1.0", "representative": { "id": "AMTR_s00025p00214840", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 128, "end": 356, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 431, "end": 576, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 73, 248, 281, 299, 318, 346, 372, 399, 463, 488, 502, 537, 565, 590 ] }, { "node_id": 4737824, "distance_to_parent": 0.084522, "left_index": 965, "right_index": 990, "taxon_id": 1437201, "taxon_name": "Pentapetalae", "node_type": "speciation", "bootstrap": 15, "children": [ { "node_id": 425712, "distance_to_parent": 0.203944, "left_index": 988, "right_index": 989, "protein_stable_id": "KMT17655", "gene_stable_id": "BVRB_2g036030", "gene_description": "hypothetical protein isoform B", "sequence": "MGFVASQTMTIMSPCSSLLHTCILNPKLPTTLFYHSTKKNHTFSINSPFSCNNCLPFQVGTQRVAKSPGLIRENIKWPSPDDEIPFWEKSVTSSDVTAELSFNVNKDSDLMHIVHVTAEMAPVAKVGGLGDVVTGLARACLSRGQTVDVMLPYYECLPMRQITELNLICTYKSYHDGNWVLTNAYRAVASGIPVILIEPTNNFFKGPRIYGGSYDELEAYLFFSRACLEYMQVTGTQPDIIHVHEWQTSALPLLYWDMYHNLSLKKPRIVLTIHNMEHYGECRKEQFGKCGLDGDAYATMDKAVDDRTIGHNPERLSLLKGGIVYSNAVVTVSPSYLKETLGSGWLSSTLIKCREKYNGVLNGIDTALWNPASDSSLPAKFDAQLLDGKAICKEYIQKGLGLPTKSVGAGTHLKDRIPLVVCITRLVAQKGLHLIRHAIKNVEELGGQMVVLGIASNSHVEREFEGLATLHNQGPSIRILLIYSEELSHMLYAAADMVLVPSIYEPCGLAQMIGMRYGAVPIVRRTGGLADTVFDMDDQSSNEMSNGFVFEGIDEGSLSSAMDRAFKFYFDKPDEWQMLVKKIMQIDNSWNNAAAKYLSIYNSVRTLC", "cigar": "432D4M1180D2M52DM18DM1280D2M35DM7D3M6D7M84D9M163D5M2D5M64D11M126D6M7D4M141D8M15D4M107D3M8D6M28D7M336DM10D8M39D7M20D2M2DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D10M28D4M9D4M3DM33D2M5D4M2D7M3D11M9D4M3D8M19D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M11D4M15D13M6D16M10D12M7D14MD11M21D2M6D5M39D4MD5M8D5M4D15M15D4M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D15M27D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M12D2M16DM3DM4D2M12DMD4M3DM14DM218DM13DM582DM11D5M1146D", "taxon_id": 3555, "taxon_name": "Beta vulgaris subsp. vulgaris", "assembly": "RefBeet-1.2.2", "representative": { "id": "BVRB_2g036030", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 112, "end": 341, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 415, "end": 566, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 58, 232, 265, 283, 302, 330, 356, 383, 445, 470, 484, 519, 547, 572 ] }, { "node_id": 4737832, "distance_to_parent": 0.03132, "left_index": 966, "right_index": 987, "taxon_id": 1437201, "taxon_name": "Pentapetalae", "node_type": "speciation", "bootstrap": 23, "children": [ { "node_id": 4737846, "distance_to_parent": 0.16618, "left_index": 977, "right_index": 986, "taxon_id": 4107, "taxon_name": "Solanum", "node_type": "speciation", "bootstrap": 99, "children": [ { "node_id": 426063, "distance_to_parent": 0.010432, "left_index": 984, "right_index": 985, "protein_stable_id": "Solyc07g042830.2.1", "gene_stable_id": "Solyc07g042830.2", "sequence": "MDFTSCLSFPSSIAPNGNHSSSYNCSSSFNHRSCYNNISSKANLLKKQSYVFSKYQLRNFNIQLVPRIEAQLKAEQLEGSEAGCESDGLRWPSPSDEIPFWKGDFPSWDLSSDASSGVEQDSDLLHIVHVTAEMAPIAKVGGLGDVVTGLGRACLNRGHKVDVMIPFYECIPKHCINELALMRTYNSYHDGNWVACNAYRGEVSGVPVILIEPSNHFFKGKNIYGGSYNELDAYLFFSRACLEWMQVNGTQPDIIHVHEWQTGALPLFYWDMYHFLSLQKPRIVLTIHNMEHYGECRQEQLSKFGLDGSAYATEDKAVDDRTVGHNPERLSLLKGGIVYSNAIVTVSPTYLKETLCSGWLSGALMRNRDKYSGILNGIDTEMWNPATDIYLPAKFDAGKTEGKRICKKFVQKGLGLPISVADQKPLVVCITRLVAQKGLHLITHAIKHVEELGGQMVVLGRASDDRVEREFEGLAELHNKGSNIRILLMYSEELSHMLYAAADMVLVPSMYEPCGLAQMIGMRYGAVPIVRKTGGLADTVFDMDNQSHTEIANGFVFEGIDEGSLNCALGRAFSYYQEKPNEWKAVVQKVMRIDNSWNNTAGKYIDIYNSVRVR", "cigar": "432D4M1180D2M52DM18DM1314D4M7D3M6D7M84D9M163D13MD2MD8M38D3M10D6M133D8M3D4M141D8M15D4M107D3M8D6M28D7M336DM10D8M39D7M20D2M2DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D10M28D4M9D4M3DM33D2M5D4M2D7M3D11M9D4M3D8M19D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M11D4M15D13M6D16M10D12M7D14MD11M21D2M6D5M39D4MD5M8D5M4D5M22D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D15M27D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M12D2M16DM3DM4D2M12DMD4M3DM14DM218DM13DM582DM11D4M1147D", "taxon_id": 4081, "taxon_name": "Solanum lycopersicum", "assembly": "SL2.50", "representative": { "id": "Solyc07g042830.2", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 126, "end": 354, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 422, "end": 558, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 71, 246, 279, 297, 316, 344, 370, 397, 452, 477, 491, 526, 554, 579 ] }, { "node_id": 4737849, "distance_to_parent": 0, "left_index": 978, "right_index": 983, "taxon_id": 4113, "taxon_name": "Solanum tuberosum", "node_type": "gene_split", "duplication_confidence_score": 1, "children": [ { "node_id": 425907, "distance_to_parent": 0, "left_index": 981, "right_index": 982, "protein_stable_id": "PGSC0003DMT400035218", "gene_stable_id": "PGSC0003DMG402013540", "gene_description": "Starch synthase VI", "sequence": "MDFTSGLSFPSSLAPNGNCSSNNNCSSSFNHRSCYNNISSKANLLKKQSYVFSKYQLRNFKIRRVPRIEAQLKAEQLESSEAGCESDGLQWPSPNDEIPFWKGDFPSWDLSSDASAGVEQDSDLLHIVHVTAEMAPIAKVGGLGDVVTGLGRACLNRGHKVDVMIPFYECIPKHCINELALMKTYNSYHDGNWVACKAYRGEVSGVPVILIEPSNHFFKGKNIYGGSYNELDAYLFFSRACLEWMQVNGTQPDIIHVHEWQTGALPLFYWDMYHFLSLQKPRIVLTIHNMEHYGECRQEQLSKFGLDGSAYATEDKAVDDRTVGHNPERLSLLKGGIVYSNAIVTVSPTYLKETLCSGWLSGALMRNRDKYSGILNGIDTEMWNPATDIYLPAKFDGNYFCDVVEVLRRHLL", "cigar": "432D4M1180D2M52DM18DM1314D4M7D3M6D7M84D9M163D13MD2MD8M38D3M10D6M133D8M3D4M141D8M15D4M107D3M8D6M28D7M336DM10D8M39D7M20D2M2DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D10M28D4M9D4M3DM33D2M5D4M2D7M3D11M9D4M3D8M19D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M11D4M15D13M6D16M10D12M7D14MD11M21D2M6DM44D3MD3M57D6M328D4M2474D", "taxon_id": 4113, "taxon_name": "Solanum tuberosum", "assembly": "SolTub_3.0", "representative": { "id": "PGSC0003DMG402013540", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 126, "end": 354, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 71, 246, 279, 297, 316, 344, 370 ] }, { "node_id": 425863, "distance_to_parent": 0, "left_index": 979, "right_index": 980, "protein_stable_id": "PGSC0003DMT400035217", "gene_stable_id": "PGSC0003DMG401013540", "gene_description": "Starch synthase VI", "sequence": "MDISSPSFLFRVCVFEASKTEGKRICKQFVQRGLGLPFQGIKHGICVADQIPLVVCITRLVAQKGLHLITHAIKHVEELGGQMVVLGRASDDRVEREFEGLAELHNKGSNIRILLMYSEELSHMLYAAADMILVPSMYEPCGLAQMIGMRYGAVPIVRKTGGLADTVFDMDDQSHTEIANGFVFEGIDEGSLNCALGRAFSYYQEKPNEWKAVVQKVMRIDNSWNNTAGKYIDIYNSKFQKDDIHIELVRMRTTKKEQDEAYSKFQEEAHGCLNQESRLECSNSRLLVILTNEKIPIQHPLTNNHHHPRYSEKQERPCLKSVDYNVLTAFEKLKEWNDFNT", "cigar": "4194D5M546D2M52D7M398DM6D5M39D4MD5M8D5M4D15M15D4M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D15M27D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M12D2M16DM3DM4D2M12DMD4M3DM14DM218DM13DM582D18M10D5M33D13M26D5M11D3M69D5M98D6M43D3M53D2M18D2M64D5M143D4M17D4M16D3M30D4M25D4M58D3M3D11M36D2M201D3M104D", "taxon_id": 4113, "taxon_name": "Solanum tuberosum", "assembly": "SolTub_3.0", "representative": { "id": "PGSC0003DMG401013540", "score": -100 }, "domains": [ { "id": "IPR001296", "root": 1296, "start": 52, "end": 188, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], 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259, 277, 296, 324, 350, 377, 442, 467, 481, 516, 544, 569 ] }, { "node_id": 4737843, "distance_to_parent": 0.022777, "left_index": 968, "right_index": 973, "taxon_id": 91835, "taxon_name": "fabids", "node_type": "speciation", "bootstrap": 42, "children": [ { "node_id": 425667, "distance_to_parent": 0.137922, "left_index": 971, "right_index": 972, "protein_stable_id": "EMJ09670", "gene_stable_id": "PRUPE_ppa004088mg", "gene_description": "Uncharacterized protein", "sequence": 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"taxon_name": "Prunus persica", "assembly": "Prupe1_0", "representative": { "id": "PRUPE_ppa004088mg", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 114, "end": 342, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 416, "end": 512, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 60, 234, 267, 285, 304, 332, 358, 385, 445, 470, 484 ] }, { "node_id": 425753, "distance_to_parent": 0.114062, "left_index": 969, "right_index": 970, "protein_stable_id": "POPTR_0018s14640.1", "gene_stable_id": "POPTR_0018s14640", "gene_display_label": "POPTRDRAFT_1117598", "gene_description": "Predicted protein", "sequence": "MIMENALAGKFLKPCFHLNSRKATLVLQKRKGIGTSHKFCYPSKFKIHPLVSHPLHLPNLEAGGVEIQESSYEGLVSDQEIVWPSPDDEIPFWKRDFPSWNVSPEVPNESSVKDSDLMHIIHVTAEMAPIAKVGGLGDVVTGLARASLSRGHTVDIVLPFYECIQKQQINDLALISTYDSYHDGNWIPTNAYRGVVSGIPVIFIEPSNEFFKGQQVYGGSYNELEAYLFFSRACLEWMQVTGAQPDIIHVHEWQIGALPLLYWDMYQYLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSMYATAEKAVDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASTLMMHCDKYFGVLNGIDTAMWNPATDVFLPAKFHAQKIEGKKLCKYYIQRGLGLAAKSITSSNHVPDATVKIPLVVCITRLVPQKGLHLITHALKHIEELGGQMIVLGKAPDGRVEGEFKRLADMHNQGPSIRILLMYSEELSHMLYAAADMVLVPSMYEPCGLSQIIGMRYGSVPVVRKTGGLADTVFDMDDQSNPEIANGFVFEGIDEGSLNWALDRAFAYYRDKPDEWNGIVKKVIEIDNSWNNTAGKYIEVYNSVRGRS", "cigar": "193DM237D5M1180D2M52DM18DM1317DM7D3M271D14MD8M38D4M7D13M126D10M3D4M141D8M15D4M107D3M8D6M28D7M336DM10D8M39D8M19D2M2DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D10M28D4M9D4M3DM33D2M5D4M2D7M3D11M9D4M3D8M19D16M30D4M17D4M23DM11D4M2D14M3D3M3D2MD9M3D7M3DM68D16M11D15M11D4M15D13M6D16M10D12M7D14MD11M21D2M6D5M39D4MD5M8D5M4D15M12D7M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D11M2D8M6D2M6D7M16D9M3D9M11D6M17D10M33D11M4D15M27D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M12D2M16DM3DM4D2M12DMD4M3DM14DM218DM13DM582DM11D5M1146D", "taxon_id": 3694, "taxon_name": "Populus trichocarpa", "assembly": "JGI2.0", "representative": { "id": "POPTR_0018s14640", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 119, "end": 347, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 428, "end": 575, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 61, 239, 272, 290, 309, 337, 363, 390, 455, 480, 494, 529, 557, 582 ] } ], "representative": { "id": "POPTR_0018s14640", "score": 0.114062 } } ], "representative": { "id": "VIT_11s0065g00150", "score": 0.10864 } } ], "representative": { "id": "PGSC0003DMG402013540", "score": -99.83382 } } ], "representative": { "id": "PGSC0003DMG402013540", "score": -99.80250000000001 } } ], "representative": { "id": "PGSC0003DMG402013540", "score": -99.717978 } } ], "representative": { "id": "SELMODRAFT_452998", "score": -99.730736 } }, { "node_id": 4737819, "distance_to_parent": 0.068202, "left_index": 957, "right_index": 962, "taxon_id": 3041, "taxon_name": "Chlorophyta", "node_type": "speciation", "bootstrap": 99, "children": [ { "node_id": 425741, "distance_to_parent": 0.453696, "left_index": 960, "right_index": 961, "protein_stable_id": "ABO94079", "gene_stable_id": "OSTLU_48511", "gene_description": "predicted protein", "sequence": "METRADAAPAETAAPVERRASVVEGWDEARAPTPGTAFWNAMPRATRADAREAEVTKTTSPLRVVHITAELAPIAKVGGLGDVVEGLARAHGKMGHAVTVILPFYSCLPTDKIDGLTHVMDYDVTKGRYQDGETRYFNFRTTAMRGRVNGIDVILLKPHDDERSNIFQGSKIYGGSYDEREAYLYFCRAAREFLIASGENPNIIHCHEWQACGFPMIFWGLRDAYGQDCDGMSNAKIMLTIHNLDSNGEARQEEFCATGVDASMFATVDKALDERTIGHNPERLCLLKGGIVYSNHVTTVSPTYATEILAGGGGFTGKNLVGNKHKFSGILNGIDPESWTPSDDPFIPYGYDSTNVKSQKALCKKYLQRGLGMKEDPDAPLVVCVSRLVPQKGVNLIEQAIRTTRFNGGQFVLLGTGHSDGVFRKMAETEEFGENSDSTRLMLMYSDALSHLLYAAADIVIVPSMFEPCGLTQMIALRYAALPLVRRTGGLADTVFDIDDASIDENERNGFVFDGTGAEDIDVALSRAFNLYKSKRSTFEEYQKRAMNVDNTWTEPAQSYIDLYRTL", "cigar": "432D3M95DM79D3M536DM204D3MDM257D2M54D5M82DM51D2M1352D4M45D3M79D2M506D5M30D10M15D4M383D3MDM6D2MD2M2DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D9M33D13M3DM33D5MD5M2D7M3D15M5D4M3D8M19D16M30D4M17D4M23DM11D4M2D21M2D12M3D7M71D17M11D15M11D4M15D13M6D16M2D4M6D10M7D14MD11M21D2M6D4M25D2M13D4MD5M8D5M4D6M24D4M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D3M3D5M2D10M2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D7MD4M9D3M2D2M14D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M12D2M16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM121DM1040D", "taxon_id": 436017, "taxon_name": "Ostreococcus lucimarinus CCE9901", "assembly": "ASM9206v1", "representative": { "id": "OSTLU_48511", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 63, "end": 312, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 376, "end": 543, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ] }, { "node_id": 425876, "distance_to_parent": 0.227661, "left_index": 958, "right_index": 959, "protein_stable_id": "EDO97466", "gene_stable_id": "CHLREDRAFT_185710", "gene_description": "Soluble starch synthase", "sequence": "MKSFMRRDALGAGLRGAASTKPVSRVASVRPAPTAYRTACQVAKVDEMVSVDEELTRLRKENELLRAQLALYQQNQQPSVGAAAVAPPAAATKVLEKPAPAKQASVDGGIIWPKPGEAFWERSPRASPMPLQGGAAEAPPVERDGNPMHIIHITAEMAPIAKVGGLGDVVTGLAKAALARGHFVTVMLPFYECLPKDQIEGLKHECDIEVPKGYRWDGEIRVGPLKTSVFWGRVQGCPVYLIKPADDTNCNIFRGGRIYGGSYNEMEAYLYFCRACLEYLNVSQQNPHVLQLHDWHAAAASMLYWDVYNPNGFSRTRLMLTIHNLDNTGETRQDEFFFTGVPGENFATIDKALDERTIGHNPERLNLMKGGIVYCNAVTTVSPTYANEVLNGGAAGWLRSTFARPELRSKFHGILNGIDCEEWNPATDALLPANFDADRPAGKALCKEFLQKGLGLEVDPRKPLVAVVSRLVPQKGIHLIKAALFRTVEKGGQFVLLGSGHSDPAFRQLADGQFKDHPNCRLKIMYSERLAHMIYAAADVVVVPSMFEPCGLTQMIALRYGAVPLVRRTGGLADTVFDVDGPAGGPAQPRNGFVFDGSDDGALHGALDRALTLYTTQPERWAALQQDNMRLDVSWGKSAKSYVDVYRSISA", "cigar": "432D4M92DMDM79D6M531D3M204D3MDM257D2M54D5M82DM51D7MDM734DM605D9M45D5M62D22MD3M56D13M124D9M4D4M141D8M127D2M8D6M30D11M11D7M383D5M6D2MD2M2DM53D14M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M6D9M33D13M3DM33D5MD5M2D7M3D15M5D4M3D8M19D16M30D4M17D4M23DM11D4M2D14M3D3M4D11M3D7M71D17M11D15M11D4M15D13M6D16M2D16M3DM7D14MD11M21D2M6D2MDM25D2M13D4MD5M8D5M4D6M24D4M4D6M2D6M132D13M11D3M27DM2DM8D2M17DM30D5M7D3M3D5M2DM4D8MD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M9D3M2D2M14D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M12D2M16DM3DM4D2M12DMD4M3DM14DM218DM340DM255DM121DM72D2M966D", "taxon_id": 3055, "taxon_name": "Chlamydomonas reinhardtii", "assembly": "v3.1", "representative": { "id": "CHLREDRAFT_185710", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 149, "end": 392, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 459, "end": 614, "name": "Glyco_trans_1", "description": "Glycosyl transferase, 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"left_index": 949, "right_index": 950, "protein_stable_id": "EDP08594", "gene_stable_id": "CHLREDRAFT_205619", "gene_description": "Granule bound starch synthase", "sequence": "MQVVFVSTEVAPWSKTGGLGDVVAALPAALALRGHQVMTVSPRYADYPGVFDTGLLAPAAQPTRVTYARLYACQERGVLRVFVDHPVFRAGGGGQGPPPGSGGGGGGRGRDAGRLGGADLQARNSVLCQAALAAPVLLWLDGPEGMPQQLRRTQQLVFVGNDWPTALLPLWLQAYREVAASALYWGAMVVFTVHNFAFQGLFDADSFYRLGLPLIALQQMLLGGSGGVAKAEAEAPPDKLVTVSPGYARELTTPPAPPPPSTEALPPGATTGVMNGLDSEAVWDPATDPLLSPRIRFDAASVAVGKAAAKAELQAVLGLEQDPAAPLFAFVGRLEVQKGVDVVLAALTDLMGQPLEAGALAMLGAAPDTGAGQQWLADGLTALGRAYPRRAVGVVGLDEPLAHLLLAGADFLLVPSRWEPCGLVALAALRYGTLPIVAPTGGLLDAITAPGADLGLVMDRPVGSADDSFAKREAVRSLVRAVQAAQVLYEGGSGANYTALRQRAMAADVSWGGPAARWEQLLLQVAREPPRQGAEGGGGGGGEEEEKLPGSA", "cigar": 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"distance_to_parent": 0.040711, "left_index": 894, "right_index": 939, "taxon_id": 147380, "taxon_name": "Oryzeae", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 425856, "distance_to_parent": 0.061023, "left_index": 937, "right_index": 938, "protein_stable_id": "LPERR05G07400.1", "gene_stable_id": "LPERR05G07400", "sequence": "MAVTMGSIPTYCSYQTNGVGALKQSPHMQFQQSFNYGVRFLNKDTMCVQNNTQLTKRRATNDDLRSKSRRSHTPIVCSTGMPILFATTEVDPWCTTGGLGVVLGGLPPALAAMGHRVMTVAPRYDQYKDAWDTNVLVEVNIGDRTETVRFFHCHKRGVDRVFVDHPMFLEKVWGKTGAKLYGPTTGDDYRDNQLRFCLLCLELVGDKENFRGMEEGIERTREHRRNCPSFNVLEQSLPSSENVVFVANDWHTAILPCYLKSVYQANGIYVNAKVAFCIHNIAYQGRFAREDFELLNLPDSFLPSFDFIDGHVKPVVGRKINWMKAGITESDLVLTVSPHYVKELTSGPDKGVELDGVLRAKPLEVGIVNGMDVYVWNPATDKYISVNYDATTVTEARALNKERLQAEVGLPVDASIPLIVFVGRLEEQKGSDILIAAIPEFAEENVQIIVLGTGKKKMEEQLMLLEVKYPNKARGIAKFNVPLAHMMFAGADFIIVPSRFEPCGLIQLQGMRYGVVPICSSTGGLVDTVKEGVTGFHMGSFNVECETVDPADVTAVATTVKRALKEYNTPTFQEMIQNCMAQDLSWKGPAKKWEEVLLALGVEGSQPGIEEGEEVAPLAKENVATP", "cigar": 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"432D2M3900D5M25D2M4DM38DM6DM80D9M9D6M6D8M19D5M5D2M38D12MD13M37D4M23DM26D4M2D8M27D14M26D5M88D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M402DM586DM7DM1985D", "taxon_id": 4533, "taxon_name": "Oryza brachyantha", "assembly": "Oryza_brachyantha.v1.4b", "representative": { "id": "OB0037G10300", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 104, "end": 223, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 104, 137, 174, 230 ] }, { "node_id": 425648, "distance_to_parent": 0.014368, "left_index": 931, "right_index": 932, "protein_stable_id": "OB0037G10230.1", "gene_stable_id": "OB0037G10230", "gene_description": "UDP-Glycosyltransferase superfamily protein", "sequence": 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"309D4M119D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM182D5M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D12M91D13M8DM7DM20D4M13D4M15DM28D3M34D3M1199D3M149DM287DM172DM354D", "taxon_id": 4533, "taxon_name": "Oryza brachyantha", "assembly": "Oryza_brachyantha.v1.4b", "representative": { "id": "OB0037G10230", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 83, "end": 342, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 400, "end": 498, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 111, 138, 171, 201, 223, 256, 293, 375, 434 ] } ], "representative": { "id": "OB0037G10230", "score": -99.985632 } }, { "node_id": 4736961, "distance_to_parent": 0.015688, "left_index": 896, "right_index": 929, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 99, "children": [ { "node_id": 425692, "distance_to_parent": 0.006126, "left_index": 927, "right_index": 928, "protein_stable_id": "OPUNC07G10360.1", "gene_stable_id": "OPUNC07G10360", "gene_display_label": "GBSSII", "gene_description": "Granule-bound starch synthase II", "sequence": 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"432D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM182D5M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4537, "taxon_name": "Oryza punctata", "assembly": "AVCL00000000", "representative": { "id": "OPUNC07G10360", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 79, "end": 338, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 396, "end": 520, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 107, 134, 167, 197, 219, 252, 289, 371, 430, 494, 523, 566 ] }, { "node_id": 4736962, "distance_to_parent": 0.008436, "left_index": 897, "right_index": 926, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 3, "children": [ { "node_id": 425933, "distance_to_parent": 0.000846, "left_index": 924, "right_index": 925, "protein_stable_id": "KN539544.1_FGP005", "gene_stable_id": "KN539544.1_FG005", "sequence": "MGSTPTYCSYQTNGVGALKQSPHMQFQQSYNYGVRFLKRDTLSVRNNKHMAKIIATSTGICTKPRRSHMPIVCSAGMTIIFIATECHPWCKTGGLGDVLGGLPPALAAMGHRVMTIVPRYDQYKDAWDTNVLVEVNIGDRTETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGAKLYGPTTGDDYRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGENVVFVANDWHTGVLPCYLKSIYQAKGMYVNAKVAFCIHNIAYQGRFAREDFELLNLPDSFLPSFDFIDGHFKPVLGRKINWMKAGITECDLVMTVSPHYVKELTSGPDKGVELDGVLRTKPLEAGIVNGMDVYEWNPATDKYISVKYDATTVTEARALNKEMLQAEVGLPVDSSIPLIVFVGRLEEQKGSDILIAAIPEFVEENVQIIVLGTGKKKMEEELILLEVKYPNNARGIAKFNVPLAHMMFAGADFIIVPSRFEPCGLIQLQGMRYGVVPICSSTGGLVDTVKEGVTGFHMGSFNVECETVDPVDVTAVASTVKRALKQYNTPAFQEMVQNCMAQDLSWKGPAKKWEEVLLGLGVGGSQPGIEGEEVAPLAKENVATP", "cigar": "432D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM182D5M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4528, "taxon_name": "Oryza longistaminata", "assembly": "O_longistaminata_v1.0", "representative": { "id": "KN539544.1_FG005", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 79, "end": 338, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 396, "end": 520, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 107, 134, 167, 197, 219, 252, 289, 371, 430, 494, 523, 566 ] }, { "node_id": 4736963, "distance_to_parent": 0, "left_index": 898, "right_index": 923, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "dubious", "bootstrap": 3, "duplication_confidence_score": 0, "children": [ { "node_id": 4736964, "distance_to_parent": 0.004868, "left_index": 905, "right_index": 922, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 19, "children": [ { "node_id": 425955, "distance_to_parent": 0.001917, "left_index": 920, "right_index": 921, "protein_stable_id": "OGLUM07G10960.1", "gene_stable_id": "OGLUM07G10960", "gene_description": "UDP-Glycosyltransferase superfamily protein", "sequence": "MWAVAPHCCCATRRPPLPQRVGSLPQNSFGFRIYRRRRLPSTRTMGSTPTYCSYQTNGVGALKQSPHMQFQQSYNYGVRFLKRDTLSVRINKHMAKRIATSTGICTKPRRSHMPIVCSAGMTIIFIATECHPWCKTGGLGDVLGGLPPALAAMGHRVMTIVPRYDQYKDAWDTNVLVEVNIGDRTETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGPKLYGPTTGDDYRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGENVVFVANDWHTGVLPCYLKSIYQAKGMYVNAKVAFCIHNIAYQGRFAREDFELLNLPDSFLPSFDFIDGHFKPVVGRKINWMKAGITECDLVMTVSPHYVKELASGPDKGVELDGVLRTKPLETGIVNGMDVYEWNPATDKYISVKYDATMVTEARALNKEMLQAEVGLPVDSSIPLIVFVGRLEEQKGSDILIAAIPEFVEGNVQIIVLGTGKKKMEEELILLEVKYPNNARGIAKFNVPLAHMMFAGADFIIVPSRFEPCGLIQLQGMRYGVVPICSSTGGLVDTVKEGVTGFHMGSFNVECETVDPVDVTAVASTVKRALKQYNTPAFQEMVQNCMAQDLSWKGPAKKWEEVLLGLGVEGSHPGIEGEELAPLAKENVATP", "cigar": "192D2M5D4M58D14M7D15M7D9M119D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM182D5M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 40148, "taxon_name": "Oryza glumipatula", "assembly": "ALNU02000000", "representative": { "id": "OGLUM07G10960", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 123, "end": 382, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 440, "end": 564, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 6, 43, 151, 178, 211, 241, 263, 296, 333, 415, 474, 538, 567, 610 ] }, { "node_id": 4736974, "distance_to_parent": 0, "left_index": 906, "right_index": 919, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 13, "children": [ { "node_id": 4736977, "distance_to_parent": 0.001473, "left_index": 913, "right_index": 918, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 87, "children": [ { "node_id": 425838, "distance_to_parent": 0.001697, "left_index": 916, "right_index": 917, "protein_stable_id": "OS07T0412100-01", "gene_stable_id": "OS07G0412100", "gene_description": "Granule binding starch synthase II; Granule-bound starch synthase II; protein", "sequence": "MARTMGSTPTYCSYQTNGVGALKQSPHMQFQQSYNYGVRFLKRDTLSVRINKHMAKRIATSTGICTKPRRSHMPIVCSAGMTIIFIATECHPWCKTGGLGDVLGGLPPALAAMGHRVMTIVPRYDQYKDAWDTNVLVEVNIGDRTETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGPKLYGPTTGDDYRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGENVVFVANDWHTGVLPCYLKSIYQAKGMYVNAKVAFCIHNIAYQGRFAREDFELLNLPDSFLPSFDFIDGHFKPVVGRKINWMKAGITECDLVMTVSPHYVKELASGPDKGVELDGILRTKPLETGIVNGMDVYEWNPATDQYISVKYDATTVTEARALNKEMLQAEVGLPVDSSIPLIVFVGRLEEQKGSDILIAAIPEFVEGNVQIIVLGTGKKKMEEELILLEVKYPNNARGIAKFNVPLAHMMFAGADFIIVPSRFEPCGLIQLQGMRYGVVPICSSTGGLVDTVKEGVTGFHMGLFNVECETVDPVDVTAVASTVKRALKQYNTPAFQEMVQNCMAQDLSWKGPAKKWEEVLLGLGVEGSQPGIEGEELAPLAKENVATP", "cigar": "309D4M119D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM182D5M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 39947, "taxon_name": "Oryza sativa Japonica Group", "assembly": "IRGSP-1.0", "representative": { "id": "OS07G0412100", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 83, "end": 342, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 400, "end": 521, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 111, 138, 171, 201, 223, 256, 293, 375, 434, 498, 527, 570 ] }, { "node_id": 425892, "distance_to_parent": 0.000845, "left_index": 914, "right_index": 915, "protein_stable_id": "ONIVA07G09560.1", "gene_stable_id": "ONIVA07G09560", "gene_description": "UDP-Glycosyltransferase superfamily protein", "sequence": "MWAVAPHCCCATRRPPLPQRVGSLPQNSFGFRIYRRCRLPSTRTMGSTPTYCSYQTNGVGALKQSPHMQFQQSYNYGVRFLKRDTLSVRINKHMAKRIATSTGICTKPRRSHMPIVCSAGMTIIFIATECHPWCKTGGLGDVLGGLPPALAAMGHRVMTIVPRYDQYKDAWDTNVLVEVNIGDRTETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGPKLYGPTTGDDYRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGENVVFVANDWHTGVLPCYLKSIYQAKGMYVNAKVAFCIHNIAYQGRFAREDFELLNLPDSFLPSFDFIDGHFKPVVGRKINWMKAGITECDLVMTVSPHYVKELASGPDKGVELDGILRTKPLETGIVNGMDVYEWNPATDKYISVKYDATTVTEARALNKEMLQAEVGLPVDSSIPLIVFVGRLEEQKGSDILIAAIPEFVEGNVQIIVLGTGKKKMEEELILLEVKYPNNARGIAKFNVPLAHMMFAGADFIIVPSRFEPCGLIQLQGMRYGVVPICSSTGGLVDTVKEGVTGFHMGSFNVECETVDPVDVTAVASTVKRALKQYNTPAFQEMVQNCMAQDLSWKGPAKKWEEVLLGLGVEGSQPGIEGEELAPLAKENVATP", "cigar": "192D2M5D4M58D14M7D15M7D9M119D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM182D5M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4536, "taxon_name": "Oryza nivara", "assembly": "AWHD00000000", "representative": { "id": "ONIVA07G09560", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 123, "end": 382, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 440, "end": 564, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 6, 43, 151, 178, 211, 241, 263, 296, 333, 415, 474, 538, 567, 610 ] } ], "representative": { "id": "ONIVA07G09560", "score": -99.999155 } }, { "node_id": 4736986, "distance_to_parent": 0.001071, "left_index": 907, "right_index": 912, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 86, "children": [ { "node_id": 425650, "distance_to_parent": 0.000847, "left_index": 910, "right_index": 911, "protein_stable_id": "OBART07G11410.1", "gene_stable_id": "OBART07G11410", "gene_display_label": "GBSSII", "gene_description": "Granule-bound starch synthase II", "sequence": "MWAVAPHCCCATRRPPLPQRVGSLPQNSFGFRIYRRRRLPSTRTMGSTPTYCSYQTNGVGALKQSPHMQFQQSYNYGVRFLKRDTLSVRINKHMAKRIATSTGICTKPRRSHMPIVCSAGMTIIFIATECHPWCKTGGLGDVLGGLPPALAAMGHRVMTIVPRYDQYKDAWDTNVLVEVNIGDRTETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGPKLYGPTTGDDYRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGENVVFVANDWHTGVLPCYLKSIYQAKGMYVNAKVAFCIHNIAYQGRFAREDFELLNLPDSFLPSFDFIDGHFKPVVGRKINWMKAGITECDLVMTVSPHYVKELASGPDKGVELDGVLRTKPLETGIVNGMDVYEWNPATDKYISVKYDATMVTVARALNKEMLQAEVGLPVDSSIPLIVFVGRLEEQKGSDILIAAIPEFVEGNVQIIVLGTGKKKMEEELILLEVKYPNNARGIAKFNVPLAHMMFAGADFIIVPSRFEPCGLIQLQGMRYGVVPICSSTGGLVDTVKEGVTGFHMGSFNVECETVDPVDVTAVASTVKRALKQYNTPAFQEMVQNCMAQDLSWKGPAKKWEEVLLGLGVEGSQPGIEGEELAPLAKENVATP", "cigar": "192D2M5D4M58D14M7D15M7D9M119D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM182D5M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 65489, "taxon_name": "Oryza barthii", "assembly": "O.barthii_v1", "representative": { "id": "OBART07G11410", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 123, "end": 382, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 440, "end": 564, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 6, 43, 151, 178, 211, 241, 263, 296, 333, 415, 474, 538, 567, 610 ] }, { "node_id": 425655, "distance_to_parent": 0.000846, "left_index": 908, "right_index": 909, "protein_stable_id": "ORGLA07G0097800.1", "gene_stable_id": "ORGLA07G0097800", "gene_description": "UDP-Glycosyltransferase superfamily protein", "sequence": "MARTMGSTPTYCSYQTNGVGALKQSPHMQFQQSYNYGVRFLKRDTLSVRINKHMAKRIATSTGICTKPRRSHMPIVCSAGMTIIFIATECHPWCKTGGLGDVLGGLPPALAAMGHRVMTIVPRYDQYKDAWDTNVLVEVNIGDRTETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGPKLYGPTTGDDYRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGENVVFVANDWHTGVLPCYLKSIYQAKGMYVNAKVAFCIHNIAYQGRFAREDFELLNLPDSFLPSFDFIDGHFKPVVGRKINWMKAGITECDLVMTVSPHYVKELASGPDKGVELDGVLRTKPLETGIVNGMDVYEWNPATDKYISVKYDATMVTEARALNKEMLQAEVGLPVDSSIPLIVFVGRLEEQKGSDILIAAIPEFVEGNVQIIVLGTGKKKMEEELILLEVKYPNNARGIAKFNVPLAHMMFAGADFIIVPSRFEPCGLIQLQGMRYGVVPICSSTGGLVDTVKEGVTGFHMGSFNVECETVDPVDVTAVASTVKRALKQYNTPAFQEMVQNCMAQDLSWKGPAKKWEEVLLGLGVEGSQPGIEGEELAPLAKENVATP", "cigar": "309D4M119D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM182D5M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4538, "taxon_name": "Oryza glaberrima", "assembly": "AGI1.1", "representative": { "id": "ORGLA07G0097800", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 83, "end": 342, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 400, "end": 524, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 111, 138, 171, 201, 223, 256, 293, 375, 434, 498, 527, 570 ] } ], "representative": { "id": "OBART07G11410", "score": -149.999153 } } ], "representative": { "id": "OBART07G11410", "score": -149.998082 } } ], "representative": { "id": "OBART07G11410", "score": -149.998082 } }, { "node_id": 4736996, "distance_to_parent": 0, "left_index": 899, "right_index": 904, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 79, "children": [ { "node_id": 425994, "distance_to_parent": 0.000846, "left_index": 902, "right_index": 903, "protein_stable_id": "ORUFI07G11630.1", "gene_stable_id": "ORUFI07G11630", "sequence": "MWAVAPVSRPLPARHLSGARFFPCSLISSSSLSLPRGVRLSILRRLFLLQHCCCATRRPPLPQRVGSLPQNSFGFRLYRRRRLPSTRTMGSTPTYCSYQTNGVGALKQSPHMQFQQSYNSGVRFLKRDTLSVRNNKHMAKRIATSTGICTKPRRSHMPIVCSAGMTIIFIATECHPWCKTGGLGDVLGGLPPALSAMGHRVMTIVPRYDQYKDAWDTNVLVEVNIGDRTETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGAKLYGPTTGDDYRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGENVVFVANDWHTGVLPCYLKSIYQAKGMYVNAKVAFCIHNIAYQGRFAREDFELLNLPDSFLPSFDFIDGHFKPVLGRKINWMKAGITECDLVMTVSPHYVKELTSGPDKGVELDGVLRTKPLETGIVNGMDVYEWNPATDKYISVKYDATTVTEARALNKEMLQAEVGLPVDSSIPLIVFVGRLEEQKGSDILIAAIPEFVEENVQIIVLGTGKKKMEEELILLEVKYPNNARGIAKFNVPLAHMMFAGADFIIVPSRFEPCGLIQLQGMRYGVVPICSSTGGLVDTVKEGVTGFHMGSFNVECETVDPVDVTAVASTVKRALKQYNTPAFQEMVQNCMAQDLSWKGPAKKWEEVLLGLGVGGSQPGIEGEEVAPLAKENVATP", "cigar": "192D2M5D23M8D12MD11M5D16M7D15M7D9M119D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM182D5M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4529, "taxon_name": "Oryza rufipogon", "assembly": "OR_W1943", "representative": { "id": "ORUFI07G11630", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 167, "end": 426, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 484, "end": 608, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 87, 195, 222, 255, 285, 307, 340, 377, 459, 518, 582, 611, 654 ] }, { "node_id": 425855, "distance_to_parent": 0, "left_index": 900, "right_index": 901, "protein_stable_id": "BGIOSGA024424-PA", "gene_stable_id": "BGIOSGA024424", "gene_description": "Granule-bound starch synthase II", "sequence": "MARTMGSTPTYCSYQTNGVGALKQSPHMQFQQSYNYGVRFLKRDTLSVRNNKHMAKRIATSTGICTKPRRSHMPIVCSAGMTIIFIATECHPWCKTGGLGDVLGGLPPALAAMGHRVMTIVPRYDQYKDAWDTNVLVEVNIGDRTETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGAKLYGPTTGDDYRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGENVVFVANDWHTGVLPCYLKSIYQAKGMYVNAKVAFCIHNIAYQGRFAREDFELLNLPDSFLPSFDFIDGHFKPVLGRKINWMKAGITECDLVMTVSPHYVKELTSGPDKGVELDGVLRTKPLETGIVNGMDVYEWNPATDKYISVKYDATTVTEARALNKEMLQAEVGLPVDSSIPLIVFVGRLEEQKGSDILIAAIPEFVEENAQIIVLGTGKKKMEEELILLEVKYPNNARGIAKFNVPLAHMMFAGADFIIVPSRFEPCGLIQLQGMRYGVVPICSSTGGLVDTVKEGVTGFHMGSFNVECETVDPVDVTAVASTVKRALKQYNTPAFQEMVQNCMAQDLSWKGPAKKWEEVLLGLGVGGSQPGIEGEEVAPLAKENVATP", "cigar": "309D4M119D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM182D5M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 39946, "taxon_name": "Oryza sativa Indica Group", "assembly": "ASM465v1", "representative": { "id": "BGIOSGA024424", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 83, "end": 342, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 400, "end": 524, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 111, 138, 171, 201, 223, 256, 293, 375, 434, 498, 527, 570 ] } ], "representative": { "id": "BGIOSGA024424", "score": -100 } } ], "representative": { "id": "OBART07G11410", "score": -149.99321400000002 } } ], "representative": { "id": "OBART07G11410", "score": -149.99321400000002 } } ], "representative": { "id": "OPUNC07G10360", "score": -149.993874 } } ], "representative": { "id": "OPUNC07G10360", "score": -149.978186 } } ], "representative": { "id": "OPUNC07G10360", "score": -149.967601 } }, { "node_id": 4736946, "distance_to_parent": 0.025619, "left_index": 868, "right_index": 893, "taxon_id": 147368, "taxon_name": "Pooideae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425695, "distance_to_parent": 0.059775, "left_index": 891, "right_index": 892, "protein_stable_id": "BRADI2G41590.1", "gene_stable_id": "BRADI2G41590", "gene_description": "UDP-Glycosyltransferase superfamily protein", "sequence": "MGSVSTYCSYQTNSVGAFKQSPHVQFQQCCHKGVRFLNNESLSVRNKTHMTKTIATKNETRPSPGRSWAPIVCSTGMPIIFVATEVHPWCKTGGLGDVVGGLPPALAAMGHRVMTIAPRYDQYKDTWDTNVLVEVNVGDRTETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGAKLYGPTTGTDFRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGENVVFVANDWHTAVLPCYLKSIYKQNGIYENAKVAFCIHNIAYQGRFPSADFELLNLPECFMPSFDFIDGHIKPVVGRKINWMKAGITECDLVLTVSPHYVKELTSGPEKGVELDSILRTKTLETGIVNGMDIHDWNPATDKYISVKYNAATVTEARALNKEMLQAEVGLPVDSSIPVVIFIGRLEEQKGSDILIAAIPEFVEENVQIIVLGTGKKKMEEELMLLEAKYPQNARGIAKFNVPLARMMFAGADFIIIPSRFEPCGLIQLQGMRYGVVPICSSTGGLVDTVEEGATGFHMGSFNVEFETVDPADVTAVASNVTRALKQYKTPAFHAMVQNCMAQDLSWKGPAKKWEAALLGLGVEGSQAGIDGEEIAPLAKQNVATP", "cigar": "432D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM182D5M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 15368, "taxon_name": "Brachypodium distachyon", "assembly": "v1.0", "representative": { "id": "BRADI2G41590", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 79, "end": 338, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 396, "end": 519, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 107, 134, 167, 197, 219, 252, 289, 371, 430, 494, 523, 566 ] }, { "node_id": 4736951, "distance_to_parent": 0.03379, "left_index": 869, "right_index": 890, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 426044, "distance_to_parent": 0.024047, "left_index": 888, "right_index": 889, "protein_stable_id": "MLOC_43630.3", "gene_stable_id": "MLOC_43630", "gene_description": "Granule-bound starch synthase 1b, chloroplastic/amyloplastic", "sequence": "MGSYQTNSVGSLKLSPHIQFQQSCNNGVMFLSMRNKTQLAKRRATNYETHRNSSRTSSPIVCSTGMPIIFVATEVHPWCKTGGLGDVVGGLPPALAAMGHRVMTIAPRYDQYKDTWDTNVLVEVIVGDRTETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGSKLYGPTTGTDFRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGENVVFVANDWHTAVLPCYLKSMYKQNGIYENAKVAFCIHNIAYQGRFPRADFELLNLPESFMPSFDFVDGHVKPVVGRKINWMKAGITECDVVLTVSPHYVKELTSGPEKGVELDGVLRTKPLETGIVNGMDVIDWNPATDKYISVKYNATTVAEARALNKEILQAEVGLPVDSSIPVIVFIGRLEEQKGSDILIAAIPEFVEENVQIIVLGTGKKKMEEELMLLEVKYPQNARGIAKFNVPLAHMMFAGADFIIIPSRFEPCGLIQLQGMRYGVVPICSSTGGLVDTVREGVTGFHMGSFNVEFETVDPADVTAVGSNVTRALKQYRTPVFHAMVQNCMAQDLSWKGPAKKWEEALLSLGVEGSQPGIEGEEIAPLAKQNVATP", "cigar": "432D3M1628D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM245D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 112509, "taxon_name": "Hordeum vulgare subsp. vulgare", "assembly": "ASM32608v1", "representative": { "id": "MLOC_43630", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 68, "end": 327, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 385, "end": 508, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 96, 123, 156, 186, 207, 241, 278, 360, 419, 483, 512, 555 ] }, { "node_id": 4736954, "distance_to_parent": 0.008954, "left_index": 870, "right_index": 887, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 90, "children": [ { "node_id": 4736956, "distance_to_parent": 0.013035, "left_index": 881, "right_index": 886, "taxon_id": 4564, "taxon_name": "Triticum", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425820, "distance_to_parent": 0.002678, "left_index": 884, "right_index": 885, "protein_stable_id": "TRIAE_CS42_2AL_TGACv1_093163_AA0273760.1", "gene_stable_id": "TRIAE_CS42_2AL_TGACv1_093163_AA0273760", "gene_description": "Granule-bound starch synthase 1, chloroplastic/amyloplastic", "sequence": "MLNCIMRRLIHWGTDRGEGVLGDEGGTGALEEYYEVGAEGEYNEEIIVATQRSSLRGCQMGSIPTYCSYQTNSVGSLKLSPHIQLQQSCNNGVMLLSMRNKTQLAKRRATNYGTHRNSSRTPAPIVCSTGMPIIFVATEVHPWCKTGGLGDVVGGLPPALAAMGHRVMTIAPRYDQYKDTWDTNVLVEVIVGDRTETVRFFHCYKRGVDHVFVDHPMFLEKVWGKTGSKLYGPTTGTDFRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGENVVFVANDWHTAVLPCYLKSMYKQNGIYENAKVAFCIHNIAYQGRFPRADFELLNLPESFVPSFDFVDGHVKPVVGRKINWMKAGISECDVVLTVSPHYVKELTSGPEKGVELDGVLRAKPLETGIVNGMDVVDWNPATDKYISVKYNATTVAEARALNKEILQAEVGLPVDSSIPVIVFIGRLEEQKGSDILIAAIPEFVEENVQIIVLGTGKKKMEEELMLLEAEYPQNARGIAKFNVPLAHMMFAGADFIIVPSRFEPCGLIQLQGMRYGVIPICSSTGGLVDTVREGVTGFHMGSFNVEFETVDPADVAAVASNVTRALKQYKTLSFHAMVQNCMAQDLSWKGPAKKWEEALLGLGVEGSQPGIEGEEIAPVAKQNVATP", "cigar": "192D2M5D2M46D4M8D17M5D7M6D14MD7M60D5M50D5M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM245D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_2AL_TGACv1_093163_AA0273760", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 133, "end": 392, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 450, "end": 573, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 8, 52, 161, 188, 221, 251, 273, 306, 343, 425, 484, 548, 577, 620 ] }, { "node_id": 425740, "distance_to_parent": 0, "left_index": 882, "right_index": 883, "protein_stable_id": "TRIUR3_18340-P1", "gene_stable_id": "TRIUR3_18340", "gene_description": "Granule-bound starch synthase 1b, chloroplastic/amyloplastic", "sequence": "MGSIPTYCSYQTNSVGSLKLSPHIQLQQSCNNGVMFLSMRNKTQLAKRRATNYGTHRNSSRTPAPIVCSTGMPIIFVATEVHPWCKTGGLGDVVGGLPPALAAMGHRVMTIAPRYDQYKDTWDTNVLVEVIVGDRTETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGSKLYGPTTGTDFRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYVLPCYLKSMYKQNGIYENAKGRFPRADFELLNLPESFVPSFDFVDGHVKPVVGRKINWMKAGISECDVVLTVSPHYVKELTSGPEKGVELDGVLRAKPLETGIVNGMDVVDWNPATDKYISVKYNATTVRFQFLLLYQLPHMDNSILTEGISQVAEARALNKEILQAEVGLPVDSSIPVIVFIGRLEEQKGSDILIAAIPEFVEENVQIIVLGTGKKKMEEELMLLEAKYPQNARGIAKFNVPLAHMMFAGADFIIVPSRFEPCGLIQLQGMRYGVIPICSSTGGLVDTVREGVTGFHMGSFNVEFETVDPADVAAVASNVTRALKQYKTLSFHAMVQNCMAQDLSWKGPAKKWEEALLGLGVEGSQPGIEGEEIAPLAKQNVATP", "cigar": "432D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM245D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D2M23D7M3D4M2D2MD7M85D15M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D31M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4572, "taxon_name": "Triticum urartu", "assembly": "ASM34745v1", "representative": { "id": "TRIUR3_18340", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 74, "end": 308, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 391, "end": 514, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 102, 129, 162, 192, 214, 233, 259, 425, 489, 518, 561 ] } ], "representative": { "id": "TRIUR3_18340", "score": -100 } }, { "node_id": 4736957, "distance_to_parent": 0.003611, "left_index": 871, "right_index": 880, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 90, "children": [ { "node_id": 425930, "distance_to_parent": 0.009229, "left_index": 878, "right_index": 879, "protein_stable_id": "TRIAE_CS42_2BL_TGACv1_131614_AA0429850.1", "gene_stable_id": "TRIAE_CS42_2BL_TGACv1_131614_AA0429850", "gene_description": "Granule-bound starch synthase 1, chloroplastic/amyloplastic", "sequence": "MGSIPNYCSYQTNSVGSLKLSPHIQFQQSCNNEVMFLSMRNKTQLAKRRATNYGTHRNSSRTPAPIVCSTGMPIIFVATEVHPWCKTGGLGDVVGGLPPALAAMGHRVMTIAPRYDQYKDTWDTNVLVEVIVGDRTETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGSKLYGPTTGTDFRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGENVVFVANDWHTAVLPCYLKSMYKQNGIYVNAKVAFCIHNIAYQGRFPRVDFELLNLPESFMPSFDFVDGHVKPVVGRKINWMKAGITECDVVLTVSPHYVKELTSGPEKGVELDGVLRAKPLETGIVNGMDVIDWNPATDKYISVKYNATTVAEARALNKEILQAEVGLPVDSSIPVIVFIGRLEEQKGSDILIAAIPEFLEENVQIIVLGTGKKKMEEELMLLEAKYPQNARGIAKFNVPLAHMMFAGANFIIVPSRFEPCGLIQLQGMRYGVIPICSSTGGLVDTVSEGVTGFHMGSFNVEFETVDPADVAAVASNVTRALKQYKTPSFHAMVQNCMAQDLSWKGPAKKWEEALLGLGVEGSQPGIEGEEIAPLAKQNVATP", "cigar": "432D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM245D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_2BL_TGACv1_131614_AA0429850", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 74, "end": 333, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 391, "end": 514, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 102, 129, 162, 192, 214, 247, 284, 366, 425, 489, 518, 561 ] }, { "node_id": 4736958, "distance_to_parent": 0.004526, "left_index": 872, "right_index": 877, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425901, "distance_to_parent": 0.00087, "left_index": 875, "right_index": 876, "protein_stable_id": "EMT24984", "gene_stable_id": "F775_12484", "gene_description": "Putative Granule-bound starch synthase 1b, chloroplastic/amyloplastic", "sequence": "MGSIPTYCSYQTNSVGSLKLSPHIQFQQSCNNGVMFVSMRNKTQLAKRRATNYGTHPNSSRTPAPIVCSTGMPIIFVATEVHPWCKTGGLGDVVGGLPPALAAMGHRVMTIAPRYDQYKDTWDTNVLVEVIVGDRTETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGSKLYGPTTGTDFRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGENVVFVANDWHTAVLPCYLKSMYKQNGIYENAKGRFPRADFELLNLPESFMPSFDFVDGHVKPVVGRKINWMKAGITECDVVLTVSPHYVKELTSGPEKGVELDGVLRAKPLETGIVNGMDVVDWNPATDKYISVKYNATTVAEARALNKEILQAEVGLPVDSSIPVIVFIGRLEEQKGSDILIAAIPEFLEENVQIIVLGTGKKKMEEELMLLEAKYPQNARGIAKFNVPLAHMMFAGADFIIVPSRFEPCGLIQLQGMRYGVIPICSSTGGLVDTVREGVTGFHMGSFNVEFETVDPADVAAVASNVTRALKQYKTPSFHAMVRNCMAQDLSWKGPAKKWEEALLGLGVEGSQLGIEGEEIAPLAKQNVATP", "cigar": "432D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM245D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD7M85D15M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 37682, "taxon_name": "Aegilops tauschii", "assembly": "ASM34733v1", "representative": { "id": "F775_12484", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 74, "end": 322, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 380, "end": 503, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 102, 129, 162, 192, 214, 247, 273, 355, 414, 478, 507, 550 ] }, { "node_id": 425875, "distance_to_parent": 0, "left_index": 873, "right_index": 874, "protein_stable_id": "TRIAE_CS42_2DL_TGACv1_157939_AA0502660.3", "gene_stable_id": "TRIAE_CS42_2DL_TGACv1_157939_AA0502660", "gene_description": "Granule-bound starch synthase 1, chloroplastic/amyloplastic", "sequence": "MGSIPTYCSYQTNSVGSLKLSPHIQFQQSCNNGVMFVSMRNKTQLAKRRATNYGTHPNSSRTPAPIVCSTGMPIIFVATEVHPWCKTGGLGDVVGGLPPALAAMGHRVMTIAPRYDQYKDTWDTNVLVEVIVGDRTETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGSKLYGPTTGTDFRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGENVVFVANDWHTAVLPCYLKSMYKQNGIYENAKVAFCIHNIAYQGRFPRADFELLNLPESFMPSFDFVDGHVKPVVGRKINWMKAGITECDVVLTVSPHYVKELTSGPEKGVELDGVLRAKPLETGIVNGMDVVDWNPATDKYISVKYNATTVAEARALNKEILQAEVGLPVDSSIPVIVFIGRLEEQKGSDILIAAIPEFLEENVQIIVLGTGKKKMEEELMLLEAKYPQNARGIAKFNVPLAHMMFAGADFIIVPSRFEPCGLIQLQGMRYGVIPICSSTGGLVDTVREGVTGFHMGSFNVEFETVDPADVAAVASNVTRALKQYKTPSFHAMVRNCMAQDLSWKGPAKKWEEALLGLGVEGSQLGIEGEEIAPLAKQNVATP", "cigar": "432D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM245D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_2DL_TGACv1_157939_AA0502660", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 74, "end": 333, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 391, "end": 514, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 102, 129, 162, 192, 214, 247, 284, 366, 425, 489, 518, 561 ] } ], "representative": { "id": "TRIAE_CS42_2DL_TGACv1_157939_AA0502660", "score": -100 } } ], "representative": { "id": "TRIAE_CS42_2DL_TGACv1_157939_AA0502660", "score": -99.995474 } } ], "representative": { "id": "TRIAE_CS42_2DL_TGACv1_157939_AA0502660", "score": -99.991863 } } ], "representative": { "id": "TRIAE_CS42_2DL_TGACv1_157939_AA0502660", "score": -99.98290899999999 } } ], "representative": { "id": "TRIAE_CS42_2DL_TGACv1_157939_AA0502660", "score": -99.949119 } } ], "representative": { "id": "OPUNC07G10360", "score": -149.92689000000001 } }, { "node_id": 4737005, "distance_to_parent": 0.017753, "left_index": 845, "right_index": 866, "taxon_id": 147369, "taxon_name": "Panicoideae", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 425691, "distance_to_parent": 0.039339, "left_index": 864, "right_index": 865, "protein_stable_id": "Si029257m", "gene_stable_id": "Si029257m.g", "gene_description": "UDP-Glycosyltransferase superfamily protein", "sequence": "MAATMGSISAYGSYQTNRPSALKQGPHMQFQKCCGGVTFLSKRSQSTRSKTHLAKRRATNNGIHPKATRSRAPIVCSTGMTIVFVATEVHPWCKTGGLGDVVGGLPPALAAMGHRVMTIAPRYDQYKDAWDTNVLVEVNVGDTVETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGAKLYGPTTGTDYRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGEDVVFVANDWHTAVLPCYLKNMYKANGIYANAKVAFCIHNIAYQGRFARADFDLLNLPDSFLPSFDFLDGHVKPVLGRKINWMKGGIMESDLVLTVSPHYVKELTSGPDKGVELDGVLRTKPLETGIVNGMDVYEWDPATDKYISVKYDATTVTEARALNKERLQAEVGLPVDSSIPVIVFVGRLEEQKGSDILISAIPEFVGENVQIIVLGTGKKKMEEELTLLEVKYPNNARGIAKFNVPLAHMMFAGADFIIVPSRFEPCGLIQLQGMRYGVIPICSSTGGLVDTVKEGITGFHMGSFNVECETVDPADVTAVGLTVTRALKQYNTPAFHVMVQNCMAQDLSWKGPAKKWEEVLLGLGVEGSQAGIEGEEIAPLAKENVATP", "cigar": "309D4M119D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14DMD2M8D3M97DM182D5M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4555, "taxon_name": "Setaria italica", "assembly": "JGIv2.0", "representative": { "id": "Si029257m.g", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 82, "end": 341, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 399, "end": 522, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 110, 137, 170, 200, 222, 255, 292, 374, 433, 497, 526, 569 ] }, { "node_id": 4737007, "distance_to_parent": 0.015374, "left_index": 846, "right_index": 863, "taxon_id": 147429, "taxon_name": "Andropogoneae", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 425945, "distance_to_parent": 0.025834, "left_index": 861, "right_index": 862, "protein_stable_id": "EER98410", "gene_stable_id": "SORBI_002G116000", "gene_description": "hypothetical protein", "sequence": "MAAMMGSISAYGSYQTNRPSALKQAPHMQFQQCCSSGVGFLSKHSQSMRSKTQLAKRRATNNGIHPKTTRPRAPIVCSTGMAIIFVATEVHPWCKTGGLGDVVGGLPPALAAMGHRVMTIAPRYDQYKDAWDTSVLVEVNIGDTVETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGAKLYGPTTGTDYRDNQLRFCLLCLAALEAPRVLNLNSEHFSGPYGEDVVFVANDWHTAVLPCYLKSMYKPNGIYANAKVAFCIHNIAYQGRFARADFELLNLPDSFLPSFDFIDGYVKPVVGRKINWMKAGIIESDLVLTVSPHYVKELTSGPEKGVELDGVLRTKPLETGIVNGMDVYEWDPATDKHISVKYDATTAPEARPLNKERLQAEVGLPVDSSIPVIIFVGRLEEQKGSDILIAAIPEFVGENVQIIVLGTGKKKMEEELTQLEVKYPNNARGIAKFNVPLAHMMFAGADFIIVPSRFEPCGLIQLQGMRYGVIPICSSTGGLVDTVKEGVTGFHMGSFSVECETVDPADVTAVASTVTRALKQYDTSAFHEMVQNCMAQDLSWKGPAKKWEEVLLGLGVEGSQAGIDGEEIAPLAKENVATP", "cigar": "309D4M119D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM182D5M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D6MD6M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4558, "taxon_name": "Sorghum bicolor", "assembly": "Sorghum_bicolor_v2", "representative": { "id": "SORBI_002G116000", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 83, "end": 341, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 399, "end": 521, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 111, 138, 171, 201, 222, 255, 292, 374, 433, 497, 526, 569 ] }, { "node_id": 4737008, "distance_to_parent": 0.043528, "left_index": 847, "right_index": 860, "taxon_id": 4577, "taxon_name": "Zea mays", "node_type": "duplication", "bootstrap": 0, "duplication_confidence_score": 1, "children": [ { "node_id": 426047, "distance_to_parent": 0.007829, "left_index": 858, "right_index": 859, "protein_stable_id": "Zm00001d019479_P004", "gene_stable_id": "Zm00001d019479", "gene_description": "", "sequence": "MAATMGSISANGSYQTNRPSALKQAPHMQFQQCCNGGLRFLSKHSQSTRSKIQVAKRRATDNGIHPKTTGHRAPIVCSAGMTIVFVATEVHPWCKTGGLGDVVGGLPPALAAMGHRVMTIAPRYDQYKDAWDTSVLVEVNIGDTVETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGAKLYGPTTGTDYRDNQLRFCLLCLAALEAPRVLNFNNSEYFSGPYGEDVVFVANDWHTAILPCYLKSMYKPNGIYKNAKVAFCIHNIAYQGRFARADFDLLNLPDSFLPSFDFIDGHVKPVLGRKLNWMKAGIIESDLVLTVSPHYVKELTSGPDKGVELDGVLRTKPLEIGIVNGMDVYEWDPSTDKYISVKYDATTVTEARALNKESLQAEVGLPVDSSIPVIVFVGRLEEQKGSDILIAAIPEFVGENVQIIVLGTGKKKMEEELTQLEVKYPNNARGIAKFNVPLAHMMFAGADFIIVPSRFEPCGLIQLQGMRYGVVRLPSSALLQQFRFFVTIPICSSTGGLVDTVEEGVTGFHMGSFNVECETVDPADVTAVASTVTRALKQYDTPAFHEMVQNCMAKDLSWKGPAKKWEEVLLGLGVEGSRAGIDDAEEIAPLAKENVATP", "cigar": "309D4M119D4M91D2M1190D3M341D5M584D4M86D2MDM221DMD3M13D4M14D4M8D3M97DM182D5M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D13M12D12M4D13M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D6M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4577, "taxon_name": "Zea mays", "assembly": "AGPv4", "representative": { "id": "Zm00001d019479", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 83, "end": 342, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 400, "end": 499, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 111, 138, 171, 201, 223, 256, 293, 375, 434, 515, 544, 587 ] }, { "node_id": 4737009, "distance_to_parent": 0.038152, "left_index": 848, "right_index": 857, "taxon_id": 4577, "taxon_name": "Zea mays", "node_type": "duplication", "bootstrap": 38, "duplication_confidence_score": 1, "children": [ { "node_id": 426041, "distance_to_parent": 0.222924, "left_index": 855, "right_index": 856, "protein_stable_id": "Zm00001d027242_P002", "gene_stable_id": "Zm00001d027242", "gene_description": "", "sequence": "MLPFDSFLPSKPSTSDTATDHSSDSDFATTNSNEDTAILGMTGDGAFAISFADRFTASASAALFVEKRMVHGSKSMAVPEQGIPPNVVEDGEPFRHTSVNIDPSHTVSVPHGSVPEAPQSDSHVYSVDSNANGNLILAILDKLKEEREQQEGKYGEEDVDGSCISEEEDGDWDVDEPDEEDIIYPLSNDWHTAILPCYLKSMYKSNGIYKNAKVAFCIHNIAYQGRFARADFDLLNLPDSFLPSFDFIDGHVKPVLGRKINWMKTGIVESDLVLTVSPHYVKELTYGPDKGVELDGVLRTKPLEIGIVNGMDVYEWDPSTDKYTSVKYDATTVTEAKALNKERLQAEVGLPVDSSIPVIVFVGRLEEQKGSDILIAAIPEFVGENVQIIVLVCFNLEVISILSHDTVHNLIVAERKKIVLQGTGKKKMEEELMQLEVKYPNIARGIAKFNVPLAHMMFAGSDFIIVPSRFEPCGLIQLQGMRVSSSLCYSSDLSARKINISSHLFLSCYILIPVKQKVFPSVHHLEDLLTRLRRGVTGFHMGSFNVEGPAKKWEEVLLGLGVEGSQAGIDDAEEIAPLAKENVATP", "cigar": "432D4M91D2M167DM463D3M440D7M77DMDM29D3M341D5M585D3M86D2MDM221DMD3M13D4M14D4M8D3M97DMD4M537D6M43DM104D2M514D9M27D2M4DM38DM6DM80D4M2D3M21D26MD2M2DM45D10M8D8M37D4M2D6MDM33D2M5D4M32D18M14D4M66DM16D6M3D3M8D21M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17D36M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D54M4D3M18D4MD4M12D2MD5M300D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D6M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4577, "taxon_name": "Zea mays", "assembly": "AGPv4", "representative": { "id": "Zm00001d027242", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 180, "end": 299, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 66, 98, 135, 184, 187, 213, 250, 332, 518, 547 ] }, { "node_id": 4737012, "distance_to_parent": 0.079228, "left_index": 849, "right_index": 854, "taxon_id": 4577, "taxon_name": "Zea mays", "node_type": "duplication", "bootstrap": 98, "duplication_confidence_score": 1, "children": [ { "node_id": 425662, "distance_to_parent": 0.090869, "left_index": 852, "right_index": 853, "protein_stable_id": "Zm00001d033690_P001", "gene_stable_id": "Zm00001d033690", "gene_description": "", "sequence": "MTWIRGGPSSLDSQNIAAAIDDSCHAFLAAVRSSCAFRRRFRALHPPPLLDFFFDPDGNENPAFMPIRRGSDRGHAATVRDLDALLTPRPGEDVVFVANDWHTAILPCYMNSMYKPNGILLMGRKLNWMKAEIIESDLVLTVSPHYIKELTSGPHKGVELDGVLRAKPLEIGIVNGMDVYEWDPSTDKYISVKYDATMVTEARSLNKERLQAEVGLPVDSSIPVIVFVGCLEEQKGSDILIVAIPEFVGENVQIIVLVWHGKEEDGGIAKFNVPLAHMMFARADFIIVPSRFEPCGLIQLQGMRYGVIPICSSIGGFVDTVEEGVTGFHMGSCNVETQPT", "cigar": "432D4M91D2M165DM1024D3M341D5MDM581DM465D7M289D3M242D6M43DM102DM513D10M193D2M80D5M8D4M54DM33D2M5D4M2D4MD2M3D4M28D6M14D4M11D3M12D2M26DM37DMDM8D5MD15M3D4M2D2MD3M154D3M3D13M6D22M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17D2M29D5M12DM27D9M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD9M2313D", "taxon_id": 4577, "taxon_name": "Zea mays", "assembly": "AGPv4", "representative": { "id": "Zm00001d033690", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 89, "end": 119, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 279, "end": 337, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 23, 91, 123, 198, 259, 307, 336 ] }, { "node_id": 425873, "distance_to_parent": 0.042756, "left_index": 850, "right_index": 851, "protein_stable_id": "Zm00001d029360_P001", "gene_stable_id": "Zm00001d029360", "gene_description": "", "sequence": "MASLVASTATDDKGVELDGVLRAKLLEIGIVNGMDVYEWDPSTYKYISVKYDATTVTEARALNKERLQAEDGLRVDSSIPVIVFVGCLEEQKGSYILIATIPEFVGENVQIIVLVCFNLQVVSILSHGTVHDLIVAEKKNCSSGHEKEEDGGIAKFNVPLAHMMFAEADFIIVPSRFEPCGLIQLQGMRYGVIPICSSTGGLVDTVEEGVTGFHMGSFNVESETVDPADVTAVASTVTRALKQYDTPGVP", "cigar": "4802D5M12D2M304D8M6D10M8D13MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17D13M17D3M17D4M2D8MDM2DMD15M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D4M695D2M1117DM351D", "taxon_id": 4577, "taxon_name": "Zea mays", "assembly": "AGPv4", "representative": { "id": "Zm00001d029360", "score": 0 }, "domains": [ { "id": "IPR001296", "root": 1296, "start": 80, "end": 221, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 12, 55, 192, 221 ] } ], "representative": { "id": "Zm00001d029360", "score": 0.042756 } } ], "representative": { "id": "Zm00001d029360", "score": 0.12198400000000001 } } ], "representative": { "id": "Zm00001d019479", "score": 0.007829 } } ], "representative": { "id": "SORBI_002G116000", "score": 0.025834 } } ], "representative": { "id": "Si029257m.g", "score": -99.960661 } } ], "representative": { "id": "OPUNC07G10360", "score": -149.9 } }, { "node_id": 4737026, "distance_to_parent": 0.032646, "left_index": 746, "right_index": 843, "taxon_id": 1437201, "taxon_name": "Pentapetalae", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 425846, "distance_to_parent": 0.222865, "left_index": 841, "right_index": 842, "protein_stable_id": "KMT12498", "gene_stable_id": "BVRB_5g104250", "gene_description": "hypothetical protein", "sequence": "MASVASSHFVSRSVHVNCAAPESRATLAQIDLKTRPITHNGLRSLSKGDMLQMKSNAKALTKLVRSKGCRTQNDVPPRAIIRGMNIAFVATECDKWCKTGGLGDVVGGLPPALAKRGHRVMTIVPRYDQYKEAWDTSATVELKVGDMLLTVRFFHCYKRGVDHVFVDHPIFLEKVWGKTGSKLYGPIAGTDYDNNQLRFSLLCQAALEAPRVLNLSNNPNFSGPYGEDIVFVANDWHTGILPCYLKSMYQSRGIYQNAKVVFCIHNIAYQGRFALSDFSMLNLPEEFKESLGFIDGLVKPVKGRKINWMKAGILESDRVVTVSPHYAQEILSGPAKGVELDSACRVATLTGITNGTDIQDWNPVTDEYIDVNYDNTTVMDAKPLLKEALQAEVGLPVDPNIPLIGFIGRLEEQKGSDILAAAIPQFIGENVQIVVLGTGKKGMEKQIEELEIKYPDKARGVAKFNVPLAHMIIAGADYMLIPSRFEPCGLVQLHAMNYGTVPIVASTGGLVDTVKEGFTGFQMGAFSVECEAVDPSDVAALATTVKTTLKTYGTSAMKEMIQNCMAQDVSWKEPAKLWEKLFLSLDVPGSEPGVDAEEVAAPAKEKVATV", "cigar": "432D4M91D2M165DMDM463D3M440D7M110D2M341D5M586D2MD4M66DM243DM13D4M14D4M8D3M97DMD4M180D2M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5M4DM510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 3555, "taxon_name": "Beta vulgaris subsp. vulgaris", "assembly": "RefBeet-1.2.2", "representative": { "id": "BVRB_5g104250", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 85, "end": 343, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 401, "end": 522, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 114, 141, 174, 204, 226, 259, 296, 377, 436, 500, 529, 572 ] }, { "node_id": 4737036, "distance_to_parent": 0.029494, "left_index": 747, "right_index": 840, "taxon_id": 1437201, "taxon_name": "Pentapetalae", "node_type": "dubious", "bootstrap": 0, "duplication_confidence_score": 0, "children": [ { "node_id": 4737121, "distance_to_parent": 0.020671, "left_index": 802, "right_index": 839, "taxon_id": 1437201, "taxon_name": "Pentapetalae", "node_type": "speciation", "bootstrap": 1, "children": [ { "node_id": 4737175, "distance_to_parent": 0.173897, "left_index": 833, "right_index": 838, "taxon_id": 4107, "taxon_name": "Solanum", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425707, "distance_to_parent": 0.013598, "left_index": 836, "right_index": 837, "protein_stable_id": "Solyc08g083320.2.1", "gene_stable_id": "Solyc08g083320.2", "sequence": "MASITASHFVSRSSNVQTSLDTKSTLSQIGLRNHTLTHNGLRAVNKLDGLQSRTNTKVTPKMRSTKSATIVCGKGMNLIFVGTEVGPWSKTGGLGDVLGGLPPALAARGHRVMTISPRYDQYKDAWDTSVALEVKVGDSIEIVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGSKIYGPKAGLDYLDNELRFSLLCQAALEAPRVLNLNSSNYFSGPYGEDVLFIANDWHTALIPCYLKSMYQSRGIYLNAKVAFCIHNIAYQGRFSFSDFPLLNLPDEFRGSFDFIDGYEKPVKGRKINWMKAGILESHRVVTVSPYYAQELVSAVDKGVELDSVLRKTCITGIVNGMDTQEWNPATDKYTDVKYDITTVMDAKPLLKEALQAAVGLPVDKKIPLIGFIGRLEEQKGSDILVAAIHKFIELDVQIVVLGTGKKEFEQEIEQLEVLYPNKAKGVAKFNVPLAHMITAGADFMLVPSRFEPCGLIQLHAMRYGTVPICASTGGLVDTVKEGYTGFHMGAFNVECDVVDPDDVLKIVTTVSRALAVYGTLAFAEMIKNCMSEELSWKEPAKKWETLLLGLGASGSEPGVEGEEIAPLAKENVATP", "cigar": "432D4M91D2M165DMDM463D3M440D6M111D2M341D5M586D2MD4M66DM243DM13D4M14D4M8D3M97DMD4M180D2M58D4M48D2M243D6M59D4M77D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4081, "taxon_name": "Solanum lycopersicum", "assembly": "SL2.50", "representative": { "id": "Solyc08g083320.2", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 78, "end": 338, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 389, "end": 519, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 106, 133, 166, 196, 218, 251, 288, 369, 428, 492, 521, 564 ] }, { "node_id": 426074, "distance_to_parent": 0.006743, "left_index": 834, "right_index": 835, "protein_stable_id": "PGSC0003DMT400031568", "gene_stable_id": "PGSC0003DMG400012111", "gene_display_label": "WAXY", "gene_description": "Granule-bound starch synthase 1, chloroplastic/amyloplastic", "sequence": "MASITASHHFVSRSQTSLDTKSTLSQIGLRNHTLTHNGLRAVNKLDGLQSRTNTKVTPKMASRTETKRPGCSATIVCGKGMNLIFVGTEVGPWSKTGGLGDVLGGLPPALAARGHRVMTISPRYDQYKDAWDTSVAVEVKVGDSIEIVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGSKIYGPKAGLDYLDNELRFSLLCQAALEAPKVLNLNSSNYFSGPYGEDVLFIANDWHTALIPCYLKSMYQSRGIYLNAKVAFCIHNIAYQGRFSFSDFPLLNLPDEFRGSFDFIDGYEKPVKGRKINWMKAGILESHRVVTVSPYYAQELVSAVDKGVELDSVLRKTCITGIVNGMDTQEWNPATDKYTDVKYDITTVMDAKPLLKEALQAAVGLPVDKKIPLIGFIGRLEEQKGSDILVAAIHKFIGLDVQIVVLGTGKKEFEQEIEQLEVLYPNKAKGVAKFNVPLAHMITAGADFMLVPSRFEPCGLIQLHAMRYGTVPICASTGGLVDTVKEGYTGFHMGAFNVECDVVDPADVLKIVTTVARALAVYGTLAFAEMIKNCMSEELSWKEPAKKWETLLLGLGASGSEPGVEGEEIAPLAKENVATP", "cigar": "432D4M91D2M165D3M463D3M440D3M114D2M341D5M586D2MD4M66DM243DM13D4M14D4M8D3M97DMD4M180D2M58D4M48D2M243D6M43DM3D3M9D4M64DM10D7MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4113, "taxon_name": "Solanum tuberosum", "assembly": "SolTub_3.0", "representative": { "id": "PGSC0003DMG400012111", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 83, "end": 343, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 394, "end": 524, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 111, 138, 171, 201, 223, 256, 293, 374, 433, 497, 526, 569 ] } ], "representative": { "id": "PGSC0003DMG400012111", "score": -149.993257 } }, { "node_id": 4737122, "distance_to_parent": 0.038224, "left_index": 803, "right_index": 832, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "speciation", "bootstrap": 20, "children": [ { "node_id": 4737128, "distance_to_parent": 0.205143, "left_index": 810, "right_index": 831, "taxon_id": 3700, "taxon_name": "Brassicaceae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 4737131, "distance_to_parent": 0.048978, "left_index": 817, "right_index": 830, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "speciation", "bootstrap": 24, "children": [ { "node_id": 425779, "distance_to_parent": 0, "left_index": 828, "right_index": 829, "protein_stable_id": "Bo5g086820.1", "gene_stable_id": "Bo5g086820", "gene_description": "UDP-Glycosyltransferase superfamily protein", "sequence": "MEIASIGNSTTVITPRVKFGQSSFHSPLYINGPPSSSFSPHLSRSLITSSSVERVSLSRKMASVTASHFVSLVNNNHGGASGSEANANLSQINFKCQSTTHCGLRSFNMVDRLQRRCQAKAVSAKSSKGLQQNAPKAKRVGKIVCEKGMSMIFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTVCPRYDQYKDAWDTCVVVQIKVGDKVEEVRFFHCYKRGVDRVFVDHPLFLAKVVGKTGSKIYGPITGVDYTDNQLRFSLLCQAALEAPRVLNLNSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSRGIYMNAKVVFCIHNIAYQGRFAFDDFSLLNLPDSFKSSFDFMDGYEKPLKGRKINWMKAAILEAWRVLTVSPYYAQELISGIDRGVELHSYLRMKTVSGIINGMDVQEWNPATDKYIDIKYDITTVTEAKPLIKEALQAAVGLPVDRDVPVIGFIGRLEEQKGSDILVEAISKFMGLNVQMVILGTGKKKMEAQILELEEKFPGKAVGVAKFNVPLAHMITAGADFIIVPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVKDGYTGFHIGRFNVKCEVVDPDDVIATAKAVARAVAVYGTPAMKEMVKNCMDQDFSWKGPARLWEKVLLSLDVAGSEAGVEGEEIAPLAKENVATP", "cigar": "192D2M6D5M55D51MDM118D5M91D2M165DMDM463D3M440D3M2D2M110D2M341D5MDM581D5MD4M66DM243DM13D4M14D4M8D3M97DMD4M180D2M58D4M48D2M243D6M43DM3D8M4D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 109376, "taxon_name": "Brassica oleracea var. oleracea", "assembly": "v2.1", "representative": { "id": "Bo5g086820", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 152, "end": 410, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 464, "end": 590, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 51, 179, 206, 239, 269, 291, 324, 361, 501, 594, 637 ] }, { "node_id": 4737135, "distance_to_parent": 0, "left_index": 818, "right_index": 827, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "duplication", "bootstrap": 0, "duplication_confidence_score": 0.5, "children": [ { "node_id": 425829, "distance_to_parent": 0, "left_index": 825, "right_index": 826, "protein_stable_id": "CDX73274", "gene_stable_id": "GSBRNA2T00106331001", "gene_display_label": "BnaC05g28320D", "sequence": "MEIASIGNSTTVITPRVKFGQSSFHSPLYINGPPSSSFSPHLSRSLITSSSVERVSLSRKMASVTASHFVSLVNNNHGGASGSEANANLSQINFKCQSTTHCGLRSFNMVDRLQRRCQAKAVSAKSSKGLQQNAPKAKRVGKIVCEKGMSMIFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTVCPRYDQYKDAWDTCVVVQIKVGDKVEEVRFFHCYKRGVDRVFVDHPLFLAKVVGKTGSKIYGPITGVDYTDNQLRFSLLCQAALEAPRVLNLNSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSRGIYMNAKVVFCIHNIAYQGRFAFDDFSLLNLPDSFKSSFDFMDGYEKPLKGRKINWMKAAILAIP", "cigar": "192D2M6D5M55D51MDM118D5M91D2M165DMDM463D3M440D3M2D2M110D2M341D5MDM581D5MD4M66DM243DM13D4M14D4M8D3M97DMD4M180D2M58D4M48D2M243D6M43DM3D8M4D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D11M2675D3M351D", "taxon_id": 3708, "taxon_name": "Brassica napus", "assembly": "AST_PRJEB5043_v1", "representative": { "id": "GSBRNA2T00106331001", "score": -50 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 152, "end": 379, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 51, 179, 206, 239, 269, 291, 324, 361 ] }, { "node_id": 4737137, "distance_to_parent": 0.009822, "left_index": 819, "right_index": 824, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "speciation", "bootstrap": 31, "children": [ { "node_id": 426045, "distance_to_parent": 0.001391, "left_index": 822, "right_index": 823, "protein_stable_id": "Bra010189.1-P", "gene_stable_id": "Bra010189", "gene_description": "AT1G32900 (E=1e-299) | starch synthase, putative ", "sequence": "MTKKYRPSIKQMGQEEMSSKDTFKVHDDKQNTSITTGPTNWAMFRGKSQPWILSKWKKRTHENANSTTVITPRVKFGQSSFHSPLYINGPPSSSFSPHLSRCLITSSSVKRVSLSRKMAYVTASHFVSLVNNNHGGASGSEANANLSQISFKCQSMTHCGLRSFNMVDRLQRRCQAKAVSAKSSKGLQQNAPKAKRVGKIVCEKGMSMIFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTVCPRYDQYKDAWDTCVVVQIKVGDKVEDVRFFHCYKRGVDRVFVDHPLFLAKVVGKTGSKIYGPITGVDYTDNQLRFSLLCQAALEAPRVLNLNSSKYFSGPYGEDVVFVANDWHTALLPCYLKSVYQSRGIYMNAKVVFCIHNIAYQGRFAFDDFSLLNLPDSFKSSFDFMDGYEKPVKGRKINWMKAAILEAWRVLTVSPYYAQELISGIDRGVELHSYLRMKTVSGIINGMDVQEWNPATDKYIDIKYDITTVTEAKPLIKEALQAAVGLPVDRDVPVIGFIGRLEEQKGSDILVEAISKFMGLNVQMVILGTGKKKMEAQILELEEKFPGKAVGVAKFNVPLAHMITAGADFIIVPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVKDGFTGFHIGRFNVKCEVVDPDDVIATAKAVARAVAVYGTPAMKEMVKNCMDQDFSWKGPARLWEKVLLSLDVAGSEAGVEGEEIAPLAKENVATP", "cigar": "192D14M4D101MDM118D5M91D2M165DMDM463D3M440D3M2D2M110D2M341D5MDM581D5MD4M66DM243DM13D4M14D4M8D3M97DMD4M180D2M58D4M48D2M243D6M43DM3D8M4D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 51351, "taxon_name": "Brassica rapa subsp. pekinensis", "assembly": "IVFCAASv1", "representative": { "id": "Bra010189", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 209, "end": 467, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 521, "end": 647, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 63, 108, 236, 263, 296, 326, 348, 381, 418, 558, 651, 694 ] }, { "node_id": 425871, "distance_to_parent": 0, "left_index": 820, "right_index": 821, "protein_stable_id": "CDY71840", "gene_stable_id": "GSBRNA2T00020677001", "gene_display_label": "BnaAnng38950D", "sequence": "MAYVTASHFVSLVNNNHGGASGSEANANLSQISFKCQSMTHCGLRSFNMVDRLQRRCQAKAVSAKSSKGLQQNAPKAKRVGKIVCEKGMSMIFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTVCPRYDQYKDAWDTCVVVQIKVGDKVEDVRFFHCYKRGVDRVFVDHPLFLAKVVGKTGSKIYGPITGVDYTDNQLRFSLLCQAALEAPRVLNLNSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSRGIYMNAKVVFCIHNIAYQGRFAFDDFSLLNLPDSFKSSFDFMDGY", "cigar": "432D4M91D2M165DMDM463D3M440D3M2D2M110D2M341D5MDM581D5MD4M66DM243DM13D4M14D4M8D3M97DMD4M180D2M58D4M48D2M243D6M43DM3D8M4D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD9M3072D", "taxon_id": 3708, "taxon_name": "Brassica napus", "assembly": "AST_PRJEB5043_v1", "representative": { "id": "GSBRNA2T00020677001", "score": -50 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 92, "end": 297, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 119, 146, 179, 209, 231, 264 ] } ], "representative": { "id": "GSBRNA2T00020677001", "score": -50 } } ], "representative": { "id": "GSBRNA2T00106331001", "score": -50 } } ], "representative": { "id": "Bo5g086820", "score": -100 } }, { "node_id": 4737171, "distance_to_parent": 0.034802, "left_index": 811, "right_index": 816, "taxon_id": 3701, "taxon_name": "Arabidopsis", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425752, "distance_to_parent": 0.017552, "left_index": 814, "right_index": 815, "protein_stable_id": "AT1G32900.1", "gene_stable_id": "AT1G32900", "gene_display_label": "GBSS1", "gene_description": "Granule-bound starch synthase 1, chloroplastic/amyloplastic", "sequence": "MATVTASSNFVSRTSLFNNHGASSCSDVAQITLKGQSLTHCGLRSFNMVDNLQRRSQAKPVSAKSSKRSSKVKTAGKIVCEKGMSVIFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTICPRYDQYKDAWDTCVVVQIKVGDKVENVRFFHCYKRGVDRVFVDHPIFLAKVVGKTGSKIYGPITGVDYNDNQLRFSLLCQAALEAPQVLNLNSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSRGVYMNAKVVFCIHNIAYQGRFAFDDYSLLNLPISFKSSFDFMDGYEKPVKGRKINWMKAAILEAHRVLTVSPYYAQELISGVDRGVELHKYLRMKTVSGIINGMDVQEWNPSTDKYIDIKYDITTVTDAKPLIKEALQAAVGLPVDRDVPVIGFIGRLEEQKGSDILVEAISKFMGLNVQMVILGTGKKKMEAQILELEEKFPGKAVGVAKFNVPLAHMITAGADFIIVPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVKDGYTGFHIGRFNVKCEVVDPDDVIATAKAVTRAVAVYGTSAMQEMVKNCMDQDFSWKGPARLWEKVLLSLNVAGSEAGTEGEEIAPLAKENVATP", "cigar": "432D4M91D3M164DMDM463D3M440D7M110D2M341D5M586D2MD4M66DM243DM13D4M14D4M8D3M97DMD4M180D2M58D4M48D2M243D6M43DM3D3M4DM4D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 3702, "taxon_name": "Arabidopsis thaliana", "assembly": "TAIR10", "representative": { "id": "AT1G32900", "score": -175 }, "domains": [ { "id": "IPR029056", "root": 29056, "start": 70, "end": 122, "name": "Ribokinase-like", "description": "Ribokinase-like" }, { "id": "IPR013534", "root": 13534, "start": 86, "end": 345, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 399, "end": 525, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 114, 141, 174, 204, 226, 259, 296, 377, 436, 529, 572 ] }, { "node_id": 425918, "distance_to_parent": 0.011489, "left_index": 812, "right_index": 813, "protein_stable_id": "fgenesh2_kg.1__3426__AT1G32900.1", "gene_stable_id": "fgenesh2_kg.1__3426__AT1G32900.1", "gene_description": "Putative uncharacterized protein", "sequence": "MATVTVSSHFVSRTSLFNNHGASSCSDLSQITLKGPSMTHCGLRSFNMLDKLQRRFQAKSVSAKSSKGSSKVKTGGKIVCEKGMSVIFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTICPRYDQYKDAWDTCVVVQIKVGDKVENVRFFHCYKRGVDRVFVDHPIFLAKVVGKTGSKIYGPITGVDYNDNQLRFSLLCQAALEAPQVLNLNSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSRGVYMNAKVVFCIHNIAYQGRFSFDDYSLLNLPISFKSSFDFMDGYEKPVKGRKINWMKAAILEADRVLTVSPYYAQELISGVDRGVELHTYLRMKTVSGIINGMDVQEWNPSTDKYIDIKYDITTVTDAKPLIKEALQAAVGLPVDRDVPVIGFIGRLEEQKGSDILVEAISKFMGLNVQMVILGTGKKKMEAQILELEEKFPGKAVGVAKFNVPLAHMITAGADFIIVPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVKDGYTGFHIGRFNVKCEVVDPDDVIATAKAVTRAVAVYGTSAMKEMVKNCMDQDFSWKGPARLWEKVLLSLNVVGSEAGIESEEIAPLAKENVATP", "cigar": "432D4M91D3M164DMDM463D3M440D7M110D2M341D5M586D2MD4M66DM243DM13D4M14D4M8D3M97DMD4M180D2M58D4M48D2M243D6M43DM3D3M4DM4D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 81972, "taxon_name": "Arabidopsis lyrata subsp. lyrata", "assembly": "v.1.0", "representative": { "id": "fgenesh2_kg.1__3426__AT1G32900.1", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 86, "end": 345, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 399, "end": 525, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 114, 141, 174, 204, 226, 259, 296, 377, 436, 529, 572 ] } ], "representative": { "id": "AT1G32900", "score": -174.982448 } } ], "representative": { "id": "AT1G32900", "score": -174.947646 } }, { "node_id": 4737127, "distance_to_parent": 0.094956, "left_index": 804, "right_index": 809, "taxon_id": 3694, "taxon_name": "Populus trichocarpa", "node_type": "duplication", "bootstrap": 100, "duplication_confidence_score": 1, "children": [ { "node_id": 425825, "distance_to_parent": 0.045975, "left_index": 807, "right_index": 808, "protein_stable_id": "POPTR_0011s15540.1", "gene_stable_id": "POPTR_0011s15540", "gene_display_label": "POPTRDRAFT_569276", "gene_description": "Predicted protein", "sequence": "MATVTASHVVSNSSNVSSHGSETKASLGQIGLRSQSMTHSGLRSLNMTDKLQMRTQAFARKSVKKAYATWNHTSGKIVCLQGGMTVVFVGIEVAPWSKTGGLGDVIGGLPPEMAARGHRVMTISPRFDQYRDAWDTCLSAQIKVGDRIETVRYFHCYKRGVDRVFVDHPMFLEKVWGKTGSKIYGPTAGEDYQDNQLRFSLFCLAALEAPRVLSLNSSKHFSGPYGEDVVFVANDWHTALLPCYLKSMYQSRGLFMNAKVAFCIHNIAYQGRFAFSDFSLLNLPDRFKSSFDFMDLYDKPVKGRKLNWLKAGILEAQMVFTVSPYYAQELVSGIEKGMELDHCIRKTGITGIINGMDVQEWNPATDKYTSIKYDITTVSYAKPLLKEALQAEVGLPVDRDIPVIGFIGRLEEQKGSDILASAIPMLVKYNVQIIVLGTGKKYMEKQIAELEKKYPDKVRGVALFNVPLAHMIIAGADFMIIPSRFEPCGLIQLHAMRYGTVCIVASTGGLVDTVKEGYTGFHMGAFSVEVKAKEMIKNCMSQDLSWKGPARLWEKMLLSLNVAGSEAGSEGDEIAPLAKENVATP", "cigar": "432D4M91D2M165DMDM463D3M440D7M110D2M341D5M586D2MD4M66DM243DM13D4M14D4M8D3M97DMD4M180D2M58D4M48D2M245D4M43DM3D3M2D3M4D4M64DM12D5MD4M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD5M47D2M13DM160D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 3694, "taxon_name": "Populus trichocarpa", "assembly": "JGI2.0", "representative": { "id": "POPTR_0011s15540", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 86, "end": 346, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 400, "end": 537, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 114, 141, 174, 204, 226, 259, 296, 377, 436, 500, 533, 547 ] }, { "node_id": 425917, "distance_to_parent": 0.040036, "left_index": 805, "right_index": 806, "protein_stable_id": "POPTR_0001s45360.1", "gene_stable_id": "POPTR_0001s45360", "gene_display_label": "POPTRDRAFT_815839", "gene_description": "Predicted protein", "sequence": "MASLTASHFAPRNSSVSSHGSETTENFGQIGLRSQSMTHSGLRSLNMVDKLQFKTQAFARKSVKKAYATGNDTSGKIVCLQGGMTVVFVATEVAPWSKTGGLGDVLGGLPPAMAARGHRVMTISPRFDQYKDAWDTCEVAQILVGDTVETVRYFHCYKRGVDRVFVDHPMFLEKVWGKTGSKIYGPAAGEDFQDNQLRFSLFCLAALEAPRVLSLNSSKHFSGPYGEDVVFVANDWHTGLLPCYLKSMYQSRGIYMTAKVAFCIHNIAYQGRFSFSDFPLLNLPDEYKSSFDFMDGYNKPVKGRKINWLKAGILEAHRVLTVSPYYAQELVSGVDKGVELDNYLRTTGITGIVNGMDVQEWNPATDKYLSTKYEITTVLSAKPLLKEELQAEVGLPVDRDIPVIGFIGRLEEQKGSDILAAAIPMLVKNNVQIIVLGTGKKYMEKQIAELEKKYPDKVRGVAKFNVPLAHMIIAGADFMMIPSRFEPCGLIQLHAMRYGTVCIVSSTGGLVDTVKEGYTGFHMGAFNVECDVVDQADVAAIVKTAGRALAVYGTTAFKEMIKNCMSQDLSWKGPARLWEKILLNLNVTGSKAGTEGEEIAPLAKENVATP", "cigar": "432D4M91D2M165DMDM463D3M440D7M110D2M341D5M586D2MD4M66DM243DM13D4M14D4M8D3M97DMD4M180D2M58D4M48D2M245D4M43DM3D3M2D3M4D4M64DM12D5MD4M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 3694, "taxon_name": "Populus trichocarpa", "assembly": "JGI2.0", "representative": { "id": "POPTR_0001s45360", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 86, "end": 345, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 400, "end": 527, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 114, 141, 174, 204, 226, 259, 296, 377, 436, 500, 529, 572 ] } ], "representative": { "id": "POPTR_0001s45360", "score": 0.040036 } } ], "representative": { "id": "AT1G32900", "score": -174.742503 } } ], "representative": { "id": "AT1G32900", "score": -174.70427899999999 } }, { "node_id": 4737048, "distance_to_parent": 0.00776, "left_index": 748, "right_index": 801, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "duplication", "bootstrap": 0, "duplication_confidence_score": 1, "children": [ { "node_id": 4737049, "distance_to_parent": 0.079091, "left_index": 775, "right_index": 800, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 425815, "distance_to_parent": 0.114344, "left_index": 798, "right_index": 799, "protein_stable_id": "VIT_15s0048g02600.t01", "gene_stable_id": "VIT_15s0048g02600", "gene_description": "Putative uncharacterized protein", "sequence": "MATVTASNFLPRSSNGNCGATCRIEKKATLTKLRPKIQILAHNGLRALNSVDELHQRTTIKVTRKGSRKGFKNENPRPWGGIICGCGMSLIFVGTEVGPWSKTGGLGDVLGGLPPAMSANGHRVMTVSPRFDQYKDAWDTGVTVQLNVGDRFEKVRFFHCYKRGVDRVFVDHPWFLEKVWGKTGSKLYGPLAGEDFQDNQLRFSLLCQAALEAPRILNLKSSKYFSGPYGEDVVFIANDWHTAPLACYLKTMYRLKGRYGNAKVVFCIHNIAYQGRFAFADFSLLNLPDEFKSSFDFTDGYEKPVKGRKINWMKAGILEADKVLTVSPYYAKELVSGVEKGVELDNILRRTGITGIINGMDVQEWNPLTDKYISIKYDASTVKEAKLLLKEALQAEAGLPVDRNIPVIGFIGRLEEQKGSDILVAAIPQFVTANVQIIVLGTGKKPMEKQLEQLEKKYPDNARGVAKFNVPLAHMIIAGADFLLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVKEGFTGFQMGSFSVECDAVDPADATAVATSVKRALATYGTPALTEMVQNCMAQDLSWKGPAKKWEEVLLSLGVPGSEPGIDGEEIAPLSKENVATP", "cigar": "432D4M91D2M165DMDM463D3M440D7M76D2MDM29D3M342D4M586D2MD4M66DM243DM13D4M14D4M8D3M97DMD4M180D2M58D4M48D2M244D5M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 29760, "taxon_name": "Vitis vinifera", "assembly": "IGGP_12x", "representative": { "id": "VIT_15s0048g02600", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 91, "end": 349, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 405, "end": 525, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 118, 145, 178, 208, 230, 263, 300, 381, 440, 504, 533, 576 ] }, { "node_id": 4737053, "distance_to_parent": 0.025714, "left_index": 776, "right_index": 797, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 426046, "distance_to_parent": 0.546313, "left_index": 795, "right_index": 796, "protein_stable_id": "EOX95590", "gene_stable_id": "TCM_005039", "gene_description": "UDP-Glycosyltransferase superfamily protein", "sequence": "MYSSSVYPLMRLRGPELTPSSQNLVSRCKTEKAEPNVARLTLAILCLPRGLYGHQLLSPFTVEMKGCSAGDGTSLPDLGAKIHCCLAEGSSFIILFSDRLKLEIEPRKSASSTATNEELIGCSCITLPFLKRTQKMYFHNMNAFQVWGKTGSTIYAQLLERIMKTTNVGLSSGSTEDSEPQQQLTISQGHTMKMLFSLPMTGLYCPHSVLPENNRQQTLCFMARYVKPVKGRKIKWMKAGIIESDKLLTVSPYYAQELVSGIDKGVELDNILRKTGIIGIVNGMDVMAAKPLMKEALQAEVGRPQEQKGSAIPVEAIPPFIRENVQIIVLETSKKRMEKQLEQLEILYPDKARGVAKFNVPLAHMIIAGADFILVPSRFEPCGPIQLHAMRYGTVSCQPKTRTHRCLNWWVGRHSPKRVSQDFKWEPSTLRPAKKWEGVLLSLGGPGGEAGIDGEKIASLAKENVATP", "cigar": "432D4M91D2M2124D3M359D3M97DM183D4M58D4M18DM29D3M241D7M43D3M13D4M64DM12D5MD4M440D3M67D5M6D2M27D4MD2M38DM6DM80D4M2D3M21D8M4D17M2DM45D7M12D7M37D4M2DM3D2MDM33D2M5D4M2D2M3D2M3D12M9D11M35D3M12D2M26D13M16D6M3D3M8D5M4D4M6D2M3D8MD3M10D5M86D3M11D15M14DM9D3M3D13M6D22M6D10M9D9M73D2M13D4MD5M8D5M4D3M44D5M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D13M30D10M27D3MD4M12D2M70D2M191D4M4DM8DM16DM3D7M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 3641, "taxon_name": "Theobroma cacao", "assembly": "Theobroma_cacao_20110822", "representative": { "id": "TCM_005039", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 227, "end": 274, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 99, 132, 171, 191, 214, 224, 285, 330, 402, 431 ] }, { "node_id": 4737054, "distance_to_parent": 0.000773, "left_index": 777, "right_index": 794, "taxon_id": 91835, "taxon_name": "fabids", "node_type": "speciation", "bootstrap": 14, "children": [ { "node_id": 425768, "distance_to_parent": 0.111608, "left_index": 792, "right_index": 793, "protein_stable_id": "EMJ20063", "gene_stable_id": "PRUPE_ppa002955mg", "gene_description": "GBSSII-2; Uncharacterized protein", "sequence": "MATVTASSFASTSSNVSYGAVSSVSEPKTGYKKMGFGKQAMTHNGLRALNTVDELRVKIMGNSIARQARSKSFNSTRTGSRPAGTIVCGSGMNLVFLGTEVGPWSKTGGLGDVLGGLPPAMAANGHRVMTVSPRYDQYKDAWDTEVTIEVKVGEKTEKVRFFHCYKRGVDRVFVDHPLFLEKVWGKTASKIYGPIAGEDFKDNQLRFSLLCRAALEAPRVLNLNSSKYFSGPYGEEVVFIANDWHTALLPCYLKAIYQPKGIYRSAKVAFCIHNIAYQGRFASADFALLNLPDEFKSSFDFIDGYDKPVKGRKINWMKAGILESDKVLTVSPYYAEELVSTVEKGVELDNVIRKAGILGIVNGMDVQEWNPLTDKYTAAKYDASTVTDAKPLLKEALQAEVGLPVDRDIPVIGFIGRLEEQKGSDILIEAIPHFIKENVQIIVLGTGKKPMEKQLEQLEIKYPDKARGVAKFNVPLAHMITAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVKEGFTGFQMGGFNVECEVVDPADVQAIATTVTRALGTYGTPAFTEIIGNCMAQDLSWKGPAKKWEEVLLNLGVVDSEPGIDGEEIAPLAKENIATP", "cigar": "432D4M91D2M165DMDM463D3M440D7M76D2MDM29D3M341D5M586D2MD4M66DM243DM13D4M14D4M8D3M97DMD4M180D2M60D2M48D3M241D7M43DM3D8M3D5M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 3760, "taxon_name": "Prunus persica", "assembly": "Prupe1_0", "representative": { "id": "PRUPE_ppa002955mg", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 94, "end": 354, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 408, "end": 529, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 122, 149, 182, 212, 234, 267, 304, 385, 444, 508, 537, 580 ] }, { "node_id": 4737055, "distance_to_parent": 0.092048, "left_index": 778, "right_index": 791, "taxon_id": 3814, "taxon_name": "Papilionoideae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 4737057, "distance_to_parent": 0.063408, "left_index": 785, "right_index": 790, "taxon_id": 3847, "taxon_name": "Glycine max", "node_type": "duplication", "bootstrap": 100, "duplication_confidence_score": 1, "children": [ { "node_id": 425998, "distance_to_parent": 0.016082, "left_index": 788, "right_index": 789, "protein_stable_id": "GLYMA07G05580.3", "gene_stable_id": "GLYMA07G05580", "gene_description": "Granule-bound starch synthase; Uncharacterized protein", "sequence": "MATLTASSNLVSRNSHVHHGPTTASYESKAVAMGLRSLKQTNTHNGLRILNPVDELLNRTPIKTNAVQAMRKGPQGKNARPKGMITCGMTFIIIGTEVAPWCKTGGLGDVLGGLPPALAGFGHRVMTIVPRYDQYKDAWDTSVVIEVKVGDRTEKVRFFHCYKRGVDRVFVDHPWFLEKVWGKTGQKLYGPTTGNDYEDNQLRFSLFCQAALEAPRVLSLNSSKYFSGPYGEDVIFVANDWHTALIPCYLKSMYQSRGIYTNARVVFCIHNIAYQGRFAFADFSLLNLPDQFKSSFDFIDGHVKPVVGRKINWLKAGLIESWFVITVSPNYAKELVSGPDKGVELDNIIRKIDDDGRLVGIVNGMDVQEWNPTTDKYIAVKYDVSTVLEAKALLKEALQAEVGLPVDRNIPLIGFIGRLEEQKGSDILAEAIPQFIKQNVQLVALGTGKKQMEKQLEELEISYPDKARGVAKFNVPLAHMIIAGADFILVPSRFEPCGLIQLQAMRYGSVPIVASTGGLVDTVKEGFTGFQMGAFNVECDAVDPADVDAISKTVKRALAVYGTPAFTEIIKNCMAQDLSWKGPAKEWEEVLLSLGVPGSEPGSDGEEIAPQAKENVATP", "cigar": "432D4M91D2M165D3M463D3M440D7M76D2MDM29D3M341D5M586D2MD4M66DM243DM13D4M14D4M8D3M97DMD4M180D2M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDM513D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D11M5D15MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 3847, "taxon_name": "Glycine max", "assembly": "V1.0", "representative": { "id": "GLYMA07G05580", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 92, "end": 351, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 411, "end": 531, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 119, 146, 179, 209, 231, 264, 301, 386, 445, 509, 538, 581 ] }, { "node_id": 425956, "distance_to_parent": 0.012002, "left_index": 786, "right_index": 787, "protein_stable_id": "GLYMA16G02110.4", "gene_stable_id": "GLYMA16G02110", "gene_description": "Uncharacterized protein", "sequence": "MATLTASSNLVSRNSHVHHGPTTASYESKAVAMGLRSLKQTNTHSGLRIFNPVDELLNRTPIKTNAMQAMRKGPQGKNVWPKGIITCGMTFIIIGTEVAPWCKTGGLGDVLGGLPPALAGFGHRVMTIVPRYDQYKDAWDTGVVIEVKVGDRTEKVRFFHCYKRGVDRVFVDHPWFLEKVWGKTGQKLYGPTTGDDYEDNQLRFSLFCQAALEAPRVLSLNSSKYFSGPYGEDVIFVANDWHTALIPCYLKSMYQPRGIYMNARVVFCIHNIAYQGRFAFADFSLLNLPDQFKSSFDFIDGHVKPVVGRKINWLKAGLIESWFVITVSPNYAKELVSGPDKGVELDNILRKIDDDGRLVGIVNGMDVQEWNPTTDKYIAVKYDVSTVLEAKALLKEALQAEVGLPVDRNIPLIGFIGRLEEQKGSDILAEAIPQFIKENVQLVALGTGKKQMEKQLQELEISYPDKARGVAKFNVPLAHMIIAGADFILVPSRFEPCGLIQLQAMRYGSVPIVASTGGLVDTVKEGFTGFQMGAFSVECDAVDPADVDAIAKTVKRALAVYGTPAFTEIIKNCMAQDLSWKGPAKKWEEVLLSLGVPGSEPGSDGEEIAPQAKENVATP", "cigar": "432D4M91D2M165D3M463D3M440D7M76D2MDM29D3M341D5M586D2MD4M66DM243DM13D4M14D4M8D3M97DMD4M180D2M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDM513D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D11M5D15MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 3847, "taxon_name": "Glycine max", "assembly": "V1.0", "representative": { "id": "GLYMA16G02110", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 92, "end": 351, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 411, "end": 531, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 119, 146, 179, 209, 231, 264, 301, 386, 445, 509, 538, 581 ] } ], "representative": { "id": "GLYMA16G02110", "score": 0.012002 } }, { "node_id": 4737079, "distance_to_parent": 0.054477, "left_index": 779, "right_index": 784, "taxon_id": 163742, "taxon_name": "Trifolieae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425701, "distance_to_parent": 0.042743, "left_index": 782, "right_index": 783, "protein_stable_id": "KEH18572", "gene_stable_id": "MTR_8g024340", "gene_description": "granule bound starch synthase", "sequence": "MATVTASSNIVSRNSHIYHVNVPTISCESKTARMKLGSMRKANTHNGLRILNSLDELLNRTPIKMKAVKSRRKGLQKKNVMPKGIIVCGMNLIFVGTEVGPWSKTGGLGDVLGGLPPVLAANGHRVMTISPRYDQYKDAWDTSVTVEVKVGDRKEKVRFFHCFKRGVDRVFVDHPIFLEKVWGKTGTKIYGPATGDDYQDNQLRFSLFCQAALEAARVLNLTSNKYFSGPYGEDVIFIANDWHTALISCYLKSMYQPNGIFRNAKVVFCIHNIAYQGRFAFADYSLLNLPDQFKSSFDFIDGYVKPVVGRKINWMKAGILESHRVLTVSPYYAQELVSGPDKGVELDNILRRTGVTGIVNGMDVQEWNPSSDKYITVKYDDSTVLEGKALLKEALQAEVGLPVDKNIPLIAFIGRLEEQKGSDILVAAIPQFIKEDVQIVALGTGKKEMEKQLQQLEISYPDKARGVAKFNVPLAHMIIAGADYILIPSRFEPCGLIQLQAMRYGTVPIVASTGGLVDTVKEGFTGFQMGSFNVECDAVDPADVDALAKTVTKALAVYGTPAFAEMIKNCMAQDLSWKGPAKKWEEVLLSLGVPGSEPGIDGEEIAPQAKENVATP", "cigar": "432D4M91D2M165D3M463D3M440D8M75D2MDM29D3M341D5M586D2MD4M66DM243DM13D4M14D4M8D3M97DMD4M180D2M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDM513D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 3880, "taxon_name": "Medicago truncatula", "assembly": "MedtrA17_4.0", "representative": { "id": "MTR_8g024340", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 92, "end": 351, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 404, "end": 528, "name": "Glyco_trans_1", 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1" } ], "exon_junctions": [ 128, 150, 183, 220, 301, 360, 424, 453, 496 ] } ], "representative": { "id": "MTR_8g024340", "score": -99.957257 } } ], "representative": { "id": "MTR_8g024340", "score": -99.90277999999999 } } ], "representative": { "id": "MTR_8g024340", "score": -99.81073199999999 } } ], "representative": { "id": "MTR_8g024340", "score": -99.80995899999999 } } ], "representative": { "id": "MTR_8g024340", "score": -99.784245 } }, { "node_id": 4737084, "distance_to_parent": 0.01622, "left_index": 749, "right_index": 774, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4737090, "distance_to_parent": 0.019025, "left_index": 768, "right_index": 773, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "speciation", "bootstrap": 34, "children": [ { "node_id": 425874, "distance_to_parent": 0.134411, "left_index": 771, "right_index": 772, "protein_stable_id": "VIT_02s0025g02790.t01", "gene_stable_id": 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"432D4M91D2M165DMDM463D3M440D7M76D2MDM29D3M341D5M587DMD4M66DM243DM13D4M14D4M8D2M284D2M58D4M294D5M43DM3D7M5D2MDM64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 29760, "taxon_name": "Vitis vinifera", "assembly": "IGGP_12x", "representative": { "id": "VIT_02s0025g02790", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 81, "end": 341, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 397, "end": 523, "name": "Glyco_trans_1", "description": 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"description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 114, 141, 174, 204, 226, 259, 296, 377, 436, 500, 529, 572 ] } ], "representative": { "id": "TCM_015612", "score": -99.887804 } }, { "node_id": 4737099, "distance_to_parent": 0.009041, "left_index": 750, "right_index": 767, "taxon_id": 91835, "taxon_name": "fabids", "node_type": "speciation", "bootstrap": 1, "children": [ { "node_id": 426053, "distance_to_parent": 0.123315, "left_index": 765, "right_index": 766, "protein_stable_id": "EMJ12482", "gene_stable_id": "PRUPE_ppa002995mg", "gene_description": "UDP-Glycosyltransferase superfamily protein", "sequence": "MSTLAASHFVSRTSHVNGGSGSETRTNLGQMGLWNQPMTHNGLRSLSNLDMLRIKTRPNAVPRQAMKKADKTEGDQCVGKIVCGTGMNLVFVGAEVGPWSKTGGLGDVLGGLPPALAANGHRVMTVSPRYDQYKDAWDTSVLVEIEVDGKIETVRFFHCYKRGVDRVFVDHPLFLERVWGKTGSKIYGPKTGEDYKDNQLRFSLLCQAALEAPRVLNLNSNKYFSGPYGEDVVFVANDWHTALIPCYLKTIYKPRGLYKNAKVVFCIHNIAYQGRFSFSDFSLLDLPDHLRGSFDFIDGYDKPVKGRKINWMKAGILESDRVVTVSPYYAQELISGEDKGVELDNIIRKTGITGIINGMDVQEWNPARDKYLDVKYDNTTVLDAKPLLKEALQAEVGLPVDRDIPVIGFIGRLEEQKGSDILVEAISKFIGEEVQIIILGTGKNYLETQIKQLEIKFPGKAVGVAKFNVPLAHMIIGGADFMLIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVKEGFTGFQMGAFNVVCDEVDPADVTAIATTVKRALAAYGTPALNEMIQNCMAQDLSWKGPSKQWEKMLLSLEVAGGEPGIEGEEIAPLAKENVPTP", "cigar": "432D4M91D2M165DMDM463D3M440D7M109D3M341D5M586D2MD4M66DM243DM13D4M14D4M8D3M97DMD4M180D2M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDMD2M510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 3760, "taxon_name": "Prunus persica", "assembly": "Prupe1_0", "representative": { "id": "PRUPE_ppa002995mg", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 89, "end": 349, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 403, "end": 524, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 117, 144, 177, 207, 229, 262, 299, 380, 439, 503, 532, 575 ] }, { "node_id": 4737100, "distance_to_parent": 0.11714, "left_index": 751, "right_index": 764, "taxon_id": 3814, "taxon_name": "Papilionoideae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 4737104, "distance_to_parent": 0.073654, "left_index": 758, "right_index": 763, "taxon_id": 3847, "taxon_name": "Glycine max", "node_type": "duplication", "bootstrap": 100, "duplication_confidence_score": 1, "children": [ { "node_id": 425973, "distance_to_parent": 0.029323, "left_index": 761, "right_index": 762, "protein_stable_id": "GLYMA10G31540.3", "gene_stable_id": "GLYMA10G31540", "gene_description": "Uncharacterized protein", "sequence": "MATVTASSYAVSGSACHSHRGASRREAKVNSLAQVSLNYDGLRSLNKLHVRTTRAAKTKTLLSAKSNKSGHDGVLGRIKCGMNMIFVGTEVAPWSKTGGLGDVLGGLPPALAGNGHRVMTVSPRYDQYKDAWDTSVTVEVKIGDRIETVRFFHCYKRGVDRIFVDHPCFLEKVWGKTRSKLYGPSAGVDYEDNQLRFSLLCQAALEAPRVLNLNSNKYFSGPYGDDVIFIANDWHTALLPCYLKSMYQTRGIYKNAKVAFCLHNIAYQGRHAFADFSLLNLPREFKGSFDFTDGHVKPVKGRKLNWMKAAILESDRVLTVSPYYAQELVSGEERGVELNNIIRSCGITGIVNGMDNREWSPKTDKFIDLHYDATTVTEAKLLLKEALQAEVGLPVDRNIPLIGFIGRLEEQKGSDILVEAIPMFIDQNVQIMILGTGKKVMEKQIEQLEEIYPDKVRGVAKFNGPLAHKIIAGADFIVIPSRFEPCGLVQLHAMPYGTVPIVSSTGGLVDTVQEGYTGFHMGAFNVECEAVDPVDVEKLATTVKRALGTYGTPAMTQMIQNCMAQDFSWKGPAKQWEKVLLSLEVAGSEPGIDGDEIAPLAKENVANP", "cigar": "432D4M91D3M164DMDM463D3M440D8M75D2M32D2M341D5M586D2MDM313DM13D4M14D4M8D3M97DMDM183D2M58D3M49D2M243D6M43D2MD8M5D4M64DM12D5MDM513D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 3847, "taxon_name": "Glycine max", "assembly": "V1.0", "representative": { "id": "GLYMA10G31540", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 85, "end": 343, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 400, "end": 525, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 112, 139, 172, 202, 224, 257, 294, 375, 434, 498, 527, 570 ] }, { "node_id": 425913, "distance_to_parent": 0.019905, "left_index": 759, "right_index": 760, "protein_stable_id": "GLYMA20G36040.1", "gene_stable_id": "GLYMA20G36040", "gene_description": "Uncharacterized protein", "sequence": "MATVSYAVSGSACQSHRGASRTEAKVNYSAQVSLNCQGLRSLNKLHVRTTRAAKTKTLLSAKSNKSGREGVLGRIECGMNLIFVGTEVAPWSKTGGLGDVLGGLPPALAGNGHRVMTVSPRYDQYKDAWDTSVTVEVKIGDRIETVRFFHCYKRGVDRVFVDHPCFLEKVWGKTGSKLYGPSAGVDYEDNQLRFSLLCQAALEAPRVLNLNSSKYFSGPYGEDVIFIANDWHTALLPCYLKSMYQTKGIYKNAKVAYCIHNIAYQGRHSFADFSLLNLPNKFKSSFDFTDGHVKPVKGRKLNWMKAAILESDRVLTVSPYYAQELVTGEERGVELDNVIRSRGITGIVNGMDNREWSPKTDKFIDLHYDATTVTEAKSLLKEALQAEVGLPVDRNIPLIGFIGRLEEQKGSDILVEAIPKFIDQNVQIMILGTGKKIMEKQIEQLEKIYPDKARGVAKFNGPLAHKIIAGADFIVIPSRFEPCGLVQLHAMPYGTVPIVSSTGGLVDTVQEGYTGFHMGAFNVECEAVDPVDVEKLATTVKRALGTYGTPAMTQMIQNCMSQDFSWKGPAKHWEKVLLSLEVAGSEPGIDGDEIAPLAKENVATP", "cigar": "432D4M258DMDM463D3M440D8M75D2M32D2M341D5M586D2MDM313DM13D4M14D4M8D3M97DMDM183D2M58D3M49D2M243D6M43D2MD8M5D4M64DM12D5MDM513D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 3847, "taxon_name": "Glycine max", "assembly": "V1.0", "representative": { "id": "GLYMA20G36040", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 81, "end": 340, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 397, "end": 522, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 109, 136, 169, 199, 221, 254, 291, 372, 431, 495, 524, 567 ] } ], "representative": { "id": "GLYMA20G36040", "score": 0.019905 } }, { "node_id": 4737106, "distance_to_parent": 0.047978, "left_index": 752, "right_index": 757, "taxon_id": 163742, "taxon_name": "Trifolieae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425990, "distance_to_parent": 0.036922, "left_index": 755, "right_index": 756, "protein_stable_id": "Tp57577_TGAC_v2_mRNA22358", "gene_stable_id": "Tp57577_TGAC_v2_gene21618", "sequence": "MATVTGYFACLNYQGRLTESKPKITTCFNNNSNKQVFTYVGLRSLNKLHVQTVRATPSSSITTSDKSESDKFTEKILGCGGMNLVFIGAEVGPWSKTGGLGDVLGGLPPVLAGNGHRVMTVSPRYDQYKDAWDTNVVVEIKVGDRIETVRFFHCYKRGVDRVFVDHPLFLEKVWGKTGSKLYGPKTGIDYRDNQLRFSLLCQAALEAPRVLSLNSSKYFSGPYGEDVVFIANDWHTALLPCYLKSIYKSRGIYKNAKVAFCIHNIAYQGRHAFADFDLLNLPDEFRSSFDFIDGYTKPVKGRKINWMKAGILESDRVFTVSPHYAEELVSGEDRGVELDNIIRSTGITGIVNGMDNREWSPQTDRYIDVHYDATTVTEAKSLLKEALQAEVGLPVDRSIPLIGFIGRLEEQKGSDILVEAIVKFIDEDVQIIVLGTGKKIMEKQIEELEVTYPGKAIGVAKFNGPLAHKIIAGADFIVIPSRFEPCGLVQLHAMPYGTVPIVSSTGGLVDTVKEGYTGFHAGAFNVECETVDPDDVDKLATTVKRAIKTYGTQAMKEIIQNCMAQDFSWKGPAKLWEKALLSLEVAGNEPGIDGEEIAPLAKENVATP", "cigar": "432D4M91D2M167DM463DM444D6M75DM33D2M341D5M586D2MDM2DM66D2M13D2MDM224D2M13D4M14D4M8D3M97DMDM183D2M58D3M49D2M243D6M43DM3D7M5D4M64DM12D7M2DM510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 57577, "taxon_name": "Trifolium pratense", "assembly": "Trpr", "representative": { "id": "Tp57577_TGAC_v2_gene21618", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 84, "end": 343, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 400, "end": 525, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 112, 139, 172, 202, 224, 257, 294, 375, 434, 498, 527, 570 ] }, { "node_id": 425688, "distance_to_parent": 0.035673, "left_index": 753, "right_index": 754, "protein_stable_id": "KEH42914", "gene_stable_id": "MTR_1g078000", "gene_description": "granule bound starch synthase I, putative", "sequence": "MATMRGSSVGACLNFQGRRAEPKVNLTQLTLHNNQAFTYVGLRSLNKLHVRSTARAATSSSSKTSEKSGSGKFNGKIVCGGMNLVFVGAEVGPWSKTGGLGDVLGGLPPVLAGNGHRVMTVSPRYDQYKDAWDTDVSVELKVGDRIETVRFFHCYKRGVDRVFVDHPLFLEKVWGKTESKLYGPKTGTDYKDNQLRFSLLCQAALEAPRVLNLSSSKYFSGPYGEDVVFVANDWHTALLPCYLKSLYKSRGLYKNAKVAFCIHNIAYQGRHAFSDFALLNLPDEFRSSFDFIDGYTTPVKGRKINWMKAGILESDRVFTVSPHYAEELVSGEDRGVELDNIIRSTGITGIVNGMDNREWSPQTDRYIDVHYDATTVTEAKSLLKEALQAEVGLPVDKSIPLIGFIGRLEEQKGSDILVEAIAKFIDQNVQIIVLGTGKKIMEKQIEQLEVTYPDKAIGVAKFNGPLAHKIIAGADFIIIPSRFEPCGLVQLHAMPYGTVPIVSSTGGLVDTVKEGYTGFHAGAFNVECETVDPDDVEKLATTVNRALKTYGTLAMQEIIQNCMAQDFSWKGPAKLWENALLSLEVAGNEPGIDGEEIAPLAKENVATP", "cigar": "432D4M91D3M164DMDM463DM444D6M75DM33D2M341D5M586D2MD4M66D2M13D2M242D3M14D4M8D3M97DMDM183D2M58D4M48D2M243D6M43DM3D7M5D4M64DM12D5MDM2DM510D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 3880, "taxon_name": "Medicago truncatula", "assembly": "MedtrA17_4.0", "representative": { "id": "MTR_1g078000", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 84, "end": 343, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 398, "end": 525, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 112, 139, 172, 202, 224, 257, 294, 375, 434, 498, 527, 570 ] } ], "representative": { "id": "MTR_1g078000", "score": 0.035673 } } ], "representative": { "id": "MTR_1g078000", "score": 0.083651 } } ], "representative": { "id": "PRUPE_ppa002995mg", "score": -99.876685 } } ], "representative": { "id": "TCM_015612", "score": -99.868779 } } ], "representative": { "id": "TCM_015612", "score": -99.852559 } } ], "representative": { "id": "AT1G32900", "score": -174.683608 } } ], "representative": { "id": "AT1G32900", "score": -174.654114 } } ], "representative": { "id": "AT1G32900", "score": -174.621468 } }, { "node_id": 4737181, "distance_to_parent": 0.01054, "left_index": 631, "right_index": 744, "taxon_id": 3398, "taxon_name": "Magnoliophyta", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 425970, "distance_to_parent": 0.230488, "left_index": 742, "right_index": 743, "protein_stable_id": "KMS96299", "gene_stable_id": "BVRB_000130", "gene_description": "hypothetical protein", "sequence": "METVTSSHFISSCSNTSMANSDPKLTLINNGLKNNQMMPTHSGLRSLKNNLDMLKLRNNAKNSSEELRKESSPISVISCGMKLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMTVSPRYDQYRDGWDTSVQVELKVGDRIETVRYFHTYKRGVDRVFVDHPIFLARVWGITGSKLYGPKAGEDYEDNQLRFSLLSQAALEAPRVLNLNNNPQYSGPYGEDVVFIANDWHTALLPCYLKSVYQPRGIYRNAKVAFCIHNMVYQGRFSVSDYPRLNLPQELKPLFDFVDGYDKPVKGRKINWMKAGILESDRVVTVSPNYAQEVVSGVERGVELDNVVRMTGITGIVNGMDVQEWNPTTDKYIGTNYDITTAVNAKHLIKEALQAEVGLPVDRNIPLIGFIGRLEEQKGSDILAEAIPHFIKENVQIIVLGTGKRSMENQIEQLEALYPEKARGVTKFNVPLAHMIIAGADFMLVPSRFEPCGLIQLFAMRYGTVPVVASTGGLVDTVREGYTGFHMGRFSANCDMVDPADLAAVVTTVKRALATYGTPALREMISNCMAQDFSWKEPAKKWENLLLSLEVAGSRPGIEGIEITPLARENIATP", "cigar": "432D4M91D2M165DMDM463D3M440D7M110D2M341D5M586D2MD4M66D2M13DM228DM13D4M14D4M8D3M97D6M180D2M58D4M48D2M243D6M43D2M14D4M64DM12D5MDM513D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 3555, "taxon_name": "Beta vulgaris subsp. vulgaris", "assembly": "RefBeet-1.2.2", "representative": { "id": "BVRB_000130", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 82, "end": 342, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 399, "end": 520, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 111, 138, 171, 201, 223, 256, 293, 374, 433, 497, 526, 569 ] }, { "node_id": 4737187, "distance_to_parent": 0.09664, "left_index": 632, "right_index": 741, "taxon_id": 4734, "taxon_name": "commelinids", "node_type": "speciation", "bootstrap": 76, "children": [ { "node_id": 4737210, "distance_to_parent": 0.342308, "left_index": 651, "right_index": 740, "taxon_id": 4479, "taxon_name": "Poaceae", "node_type": "speciation", "bootstrap": 2, "children": [ { "node_id": 4737212, "distance_to_parent": 0.028815, "left_index": 726, "right_index": 739, "taxon_id": 147369, "taxon_name": "Panicoideae", "node_type": "speciation", "bootstrap": 98, "children": [ { "node_id": 425784, "distance_to_parent": 0.024576, "left_index": 737, "right_index": 738, "protein_stable_id": "Si006103m", "gene_stable_id": "Si006103m.g", "gene_description": "Uncharacterized protein", "sequence": "MAALATSQLVTTRAGFGLGDASSSMFRPGVQGLRGSRASSPAATLSVRTSARAAPRQQHRRAQRGARFPSLVVCATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVSEIKVGDRYERVRFFHCYKRGVDRVFIDHPSFLERVWGKTGEKIYGPDAGVDYKDNQLRFSLLCQAALEAPRILSLNNNPYFSGPYGEDVVFVCNDWHTGPLSSYLKSNYQSNGIYRNAKTAFCIHNISYQGRFAFSDYPELNLPERFRSSFDFIDGYEKPVEGRKINWMKAGIIEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYIATKYDVSTAIAAKALNKEALQAAAGLPVDRKIPLVAFVGRLEEQKGPDVMAAAIPQLMEEDVQIVLLGTGKKKFERMLMSAEEKYPDKVRAVVKFNAALAHHIMAGADLLAVTSRFEPCGLIQLQGMRYGTPCVCASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPADVQKVASTLKRAIKVVGTPAYEEMVRNCMIQDLSWKGPAKNWENVLLSLGVAGSQPGIEGEEIAPLAKENVAAP", "cigar": "432D4M91D2M165DMDM463D3M440D5M112D2M341D4M902D3M13D4M15D3M8D3M97DMD6M177D3M58D4M48D2M243D2MD3M42D2M3D5M7D4M64DM12D5MDMD2M440D2M68D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4555, "taxon_name": "Setaria italica", "assembly": "JGIv2.0", "representative": { "id": "Si006103m.g", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 81, "end": 341, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 395, "end": 519, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 110, 137, 170, 200, 222, 255, 292, 373, 432, 496, 525, 568 ] }, { "node_id": 4737213, "distance_to_parent": 0.019151, "left_index": 727, "right_index": 736, "taxon_id": 147429, "taxon_name": "Andropogoneae", "node_type": "speciation", "bootstrap": 98, "children": [ { "node_id": 425797, "distance_to_parent": 0.030977, "left_index": 734, "right_index": 735, "protein_stable_id": "EER87785", "gene_stable_id": "SORBI_010G022600", "gene_description": "hypothetical protein", "sequence": "MSTLATSQLVATHAGLGVPDASMFRRGGVQGLRAAARASAAAGDALSMRTSACPAPRQQPAARRGGRGGRFPSLVVCATAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVVSPRYDQYKDAWDTSVVSEIKMGDGYETVRFFHCYKRGVDRVFIDHPLFLERVWGKTEEKIYGPDAGTDYKDNQLRFSLLCQAALEAPRILSLNNNPYFSGPYGEDVVFVCNDWHTGPLSCYLKSNYQSNGIYKDAKTAFCIHNISYQGRFAFSDFPELNLPERFKSSFDFIDGYEKPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYIAVKYDVSTAVEAKALNKEALQAEVGLPVDRKIPLVAFIGRLEEQKGPDVMAAAIPLLMEEDIQIVLLGTGKKKFERMLMSAEEKYPDKVRAVVKFNAALAHHIMAGADLLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIIEGKTGFHMGRLSVDCNVVEPADVKKVATTLKRAIKVVGTPAYEEMVKNCMIQDLSWKGPAKNWENVLLSLGVAGGEPGIEGEEIAPLAKENVAAP", "cigar": "432D4M91D2M165DMDM463D3M440D5M112D2M341D3M904D2M13D4M14D4M8D3M97DMD7M175D4M58D4M48D2M243D2MD3M43DM3D8M4D4M64DM12D5MDMD2M441DM68D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4558, "taxon_name": "Sorghum bicolor", "assembly": "Sorghum_bicolor_v2", "representative": { "id": "SORBI_010G022600", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 83, "end": 343, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 398, "end": 521, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 112, 139, 172, 202, 224, 257, 294, 375, 434, 498, 527, 570 ] }, { "node_id": 4737219, "distance_to_parent": 0.028096, "left_index": 728, "right_index": 733, "taxon_id": 4577, "taxon_name": "Zea mays", "node_type": "duplication", "bootstrap": 100, "duplication_confidence_score": 1, "children": [ { "node_id": 425988, "distance_to_parent": 0, "left_index": 731, "right_index": 732, "protein_stable_id": "Zm00001d045462_P001", "gene_stable_id": "Zm00001d045462", "gene_description": "", "sequence": "MAALATSQLVATRAGLGVPDASTFRRGAAQGLRGGRTASAADTLSMRTSARAAPRLQHQQQQQARRGARFPSLVVCASAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVVSPRYDQYKDAWDTSVVSEIKMGDRYETVRFFHCYKRGVDRVFVDHPLFLERVWGKTEEKIYGPDAGTDYRDNQLRFSLLCQAALEAPRILSLNNNPYFSGPYGEDVVFVCNDWHTGPLSCYLKSNYQSHGIYRDAKTAFCIHNISYQGRFAFSDYPELNLPERFKSSFDFIDGYEKPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSRDKYIAVKYDVSTAVEAKALNKEALQAEVGLPVDRNIPLVAFIGRLEEQKGPDVMAAAIPQLMEMVEDVQIVLLGTGKKKFERMLMSAEEKFPGKVRAVVKFNAALAHHIMAGADVLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIIEGKTGFHMGRLSVDCNVVEPADVKKVATTLQRAIKVVGTPAYEEMVRNCMIQDLSWKGPAKNWENVLLSLGVAGGEPGVEGEEIAPLAKENVAAP", "cigar": "432D4M91D2M165DMDM463D3M440D5M112D2M341D3M904D2M13D4M14D4M8D3M97DMD6M177D3M58D4M48D2M243D2MD4M39D4M3D5M7D4M64DM12D5MDMD2M441DM68D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D14M10D4M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4577, "taxon_name": "Zea mays", "assembly": "AGPv4", "representative": { "id": "Zm00001d045462", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 82, "end": 342, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 399, "end": 522, "name": "Glyco_trans_1", "description": "Glycosyl 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"Glycosyl transferase, family 1" } ], "exon_junctions": [ 107, 134, 167, 197, 219, 252, 289, 370, 429, 493, 522, 565 ] }, { "node_id": 425899, "distance_to_parent": 0.032224, "left_index": 719, "right_index": 720, "protein_stable_id": "LPERR06G01820.2", "gene_stable_id": "LPERR06G01820", "sequence": "MSALTTSQLATSCAGFGIADRSAPSSMLRHGLLKHRTPAGVDGSSSSSLSVTTTAGARAAPKQQRSAQRGGGRRFPSAVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHLYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYSDNQLRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLPSYLKNNYHPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFKSSFDFIDGYDTPVEGRKINWMKAGILEADKVLTVSPYYAEELISGVARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITVKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSLEEKYPNKVRAVVKFNAPLAHHIMAGADILAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVQKVATTLKRAIKVVGTPVYNEMVRNCMNQDLSWKGPAKNWENVLLGMGVAGSQPGIEGEEIAPLAKENVAAP", "cigar": 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"description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 117, 144, 177, 207, 229, 262, 299, 380, 439, 503, 532, 575 ] } ], "representative": { "id": "LPERR06G01820", "score": 0.032224 } }, { "node_id": 4737280, "distance_to_parent": 0.00169, "left_index": 676, "right_index": 717, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425722, "distance_to_parent": 0.027593, "left_index": 715, "right_index": 716, "protein_stable_id": "OB06G11980.1", "gene_stable_id": "OB06G11980", "gene_description": "Uncharacterized protein", "sequence": "MLRHGFQGLKPRSPAGADGSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGIDYKDNQLRFSLLCQAALEAPRILNLNNNPYFSGTYGEDVVFVCNDWHTGPLPSYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDFPELNLSERFRSSFDFIDGYDKPVEGRKINWMKAGILESDRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITVKYDATTAIEAKALNKEALQAEVGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMKENVQIVLLGTGKKKFEKLLKSAEEKYPSKVRAVVKFNAPLAHHIMAGADILAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVQKVATTLKRAINVVGTPAYDEMVRNCMNQDLSWKGPARNWENVLLGLGVAGSQPGVEGEEIAPLAKENVAAP", "cigar": "432DM2552D4M15D3M8D3M97DMD7M177D2M58D4M48D2M243D2MD3M43DM3D6M6D4M64DM12D5MDMD2M440D2M68D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4533, "taxon_name": "Oryza brachyantha", "assembly": "Oryza_brachyantha.v1.4b", "representative": { "id": "OB06G11980", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 57, "end": 317, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 372, "end": 495, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 86, 113, 146, 176, 198, 231, 268, 349, 408, 472, 501, 544 ] }, { "node_id": 4737288, "distance_to_parent": 0.019993, "left_index": 677, "right_index": 714, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425775, "distance_to_parent": 0.009425, "left_index": 712, "right_index": 713, "protein_stable_id": "OPUNC06G01860.1", "gene_stable_id": "OPUNC06G01860", "gene_display_label": "WX", "gene_description": "Waxy", "sequence": "MSALTTSQLATSATGFGIADRSAPSSLLRHGFQGLKPRSPAGVDASSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLPSYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITVKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQENVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVQKVATTLKRAIKIVGTPAYNEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGVEGEEIAPLAKENVAAP", "cigar": "432D4M91D2M165DMDM463D3M440D5M112D2M341D4M660DM239DMD3M13D4M15D3M8D3M97DMD7M176D3M58D4M48D2M243D2MD3M43DM3D6M6D4M64DM12D5MDMD2M440D2M68D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4537, "taxon_name": "Oryza punctata", "assembly": "AVCL00000000", "representative": { "id": "OPUNC06G01860", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 84, "end": 344, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 398, "end": 522, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 113, 140, 173, 203, 225, 258, 295, 376, 435, 499, 528, 571 ] }, { "node_id": 4737291, "distance_to_parent": 0.014065, "left_index": 678, "right_index": 711, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 43, "children": [ { "node_id": 425877, "distance_to_parent": 0.003355, "left_index": 709, "right_index": 710, "protein_stable_id": "OMERI06G01920.1", "gene_stable_id": "OMERI06G01920", "gene_display_label": "OMERI06G01920", "sequence": "MSALTTSQLATSATGFGIADRSAPSSLLRHGFQGLKPRSPAGGDATSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP", "cigar": "432D4M91D2M165DMDM463D3M440D5M112D2M341D4M660DM239DMD3M13D4M15D3M8D3M97DMD7M176D3M58D4M48D2M243D2MD3M43DM3D6M6D4M64DM12D5MDMD2M440D2M68D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D3M74D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 40149, "taxon_name": "Oryza meridionalis", "assembly": "Oryza_meridionalis_v1.3", "representative": { "id": "OMERI06G01920", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 84, "end": 344, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 398, "end": 522, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 113, 140, 173, 203, 225, 258, 295, 376, 435, 499, 528, 559 ] }, { "node_id": 4737292, "distance_to_parent": 0.000961, "left_index": 679, "right_index": 708, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 33, "children": [ { "node_id": 425814, "distance_to_parent": 0.002791, "left_index": 706, "right_index": 707, "protein_stable_id": "KN539033.1_FGP002", "gene_stable_id": "KN539033.1_FG002", "sequence": "MAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTARMSDKFQAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP", "cigar": "4334D3M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D6M11D5M6D3M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D3M74D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4528, "taxon_name": "Oryza longistaminata", "assembly": "O_longistaminata_v1.0", "representative": { "id": "KN539033.1_FG002", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 1, "end": 253, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 315, "end": 439, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 22, 49, 82, 112, 134, 167, 204, 285, 352, 416, 445, 476 ] }, { "node_id": 4737294, "distance_to_parent": 0.001659, "left_index": 680, "right_index": 705, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 426017, "distance_to_parent": 0, "left_index": 703, "right_index": 704, "protein_stable_id": "OGLUM06G02020.2", "gene_stable_id": "OGLUM06G02020", "sequence": "MSALTTSQLATSATGFGIADRSAPSSLLRHGFQGLKPRSPAGGDATSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTARMSDKFQAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP", "cigar": 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"432D4M91D2M165DMDM463D3M440D5M112D2M341D4M660DM239DMD3M13D4M15D3M8D3M97DMD7M176D3M58D4M48D2M243D2MD3M43DM3D6M6D4M64DM12D5MDMD2M440D2M68D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4538, "taxon_name": "Oryza glaberrima", "assembly": "AGI1.1", "representative": { "id": "ORGLA06G0020500", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 84, "end": 344, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 398, "end": 522, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 113, 140, 173, 203, 225, 258, 295, 376, 435, 499, 528, 571 ] }, { "node_id": 425850, "distance_to_parent": 0, "left_index": 697, "right_index": 698, "protein_stable_id": "OBART06G02000.1", "gene_stable_id": "OBART06G02000", "gene_display_label": "WX", "gene_description": "Waxy", "sequence": "MSALTTSQLATSATGFGIADRSAPSSLLRHGFQGLKPRSPAGGDATSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTARMSDKFQAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVNCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP", "cigar": "432D4M91D2M165DMDM463D3M440D5M112D2M341D4M660DM239DMD3M13D4M15D3M8D3M97DMD7M176D3M58D4M48D2M243D2MD3M43DM3D6M6D4M64DM12D5MDMD2M440D2M68D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D6M11D5M6D3M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 65489, "taxon_name": "Oryza barthii", "assembly": "O.barthii_v1", "representative": { "id": "OBART06G02000", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 84, "end": 344, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 406, "end": 530, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 113, 140, 173, 203, 225, 258, 295, 376, 443, 507, 536, 579 ] } ], "representative": { "id": "ORGLA06G0020500", "score": -150 } }, { "node_id": 4737296, "distance_to_parent": 0, "left_index": 682, "right_index": 695, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "dubious", "bootstrap": 0, "duplication_confidence_score": 0, "children": [ { "node_id": 4737298, "distance_to_parent": 0.002578, "left_index": 689, "right_index": 694, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 97, "children": [ { "node_id": 425677, "distance_to_parent": 0.000858, "left_index": 692, "right_index": 693, "protein_stable_id": "ORUFI06G02030.2", "gene_stable_id": "ORUFI06G02030", "sequence": "MSALTTSQLATSATGFGIADRSAPSSLLRHGFQGLKPRSPAGGDATSLSVTTSTRATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFVDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFNLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP", "cigar": "432D4M91D2M165DMDM463D3M440D5M112D2M341D4M660DM239DMD3M13D4M15D3M8D3M97DMD7M176D3M58D4M48D2M243D2MD3M43DM3D6M6D4M64DM12D5MDMD2M440D2M68D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D3M74D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4529, "taxon_name": "Oryza rufipogon", "assembly": "OR_W1943", "representative": { "id": "ORUFI06G02030", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 84, "end": 344, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 398, "end": 522, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 113, 140, 173, 203, 225, 258, 295, 376, 435, 499, 528, 559 ] }, { "node_id": 425964, "distance_to_parent": 0, "left_index": 690, "right_index": 691, "protein_stable_id": "ONIVA06G02500.1", "gene_stable_id": "ONIVA06G02500", "sequence": "MSALTTSQLATSATGFGIADRSAPSSLLRHGFQGLKPRSPAGGDATSLSVTTSTRATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFVDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP", "cigar": "432D4M91D2M165DMDM463D3M440D5M112D2M341D4M660DM239DMD3M13D4M15D3M8D3M97DMD7M176D3M58D4M48D2M243D2MD3M43DM3D6M6D4M64DM12D5MDMD2M440D2M68D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2MD13M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D3M74D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 4536, "taxon_name": "Oryza nivara", "assembly": "AWHD00000000", "representative": { "id": "ONIVA06G02500", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 84, "end": 344, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 398, "end": 522, "name": "Glyco_trans_1", "description": "Glycosyl 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"protein_stable_id": "TRIAE_CS42_1BL_TGACv1_030553_AA0093880.1", "gene_stable_id": "TRIAE_CS42_1BL_TGACv1_030553_AA0093880", "sequence": "MAALVTSQLATSGTVLGITDRFRRAGFQGVRPRSPADAPLGMRTTGASAAPKQQSRKAHRGTRRCLSMVVRATGSAGMNLVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVSEIKVADEYERVRYFHCYKRGVDRVFVDHPCFLEKVRGKTKEKIYGPDAGTDYEDNQLRFSLLCQAALEAPRILDLNNNPYFSGPYGEDVVFVCNDWHTGLLACYLKSNYQSSGIYRTAKVAFCIHNISYQGRFSFDDFAQLNLPDRFKSSFDFIDGYDKPVEGRKINWMKAGILQADKVLTVSPYYAEELISGEARGCELDNIMRLTGITGIVNGMDVSEWDPAKDKFLAANYDVTTALEGKALNKEALQAEVGLPVDRKVPLVAFIGRLEEQKGPDVMIAAIPEILKEEDVQIVLLGTGKKKFERLLKSVEEKFPSKVRAVVRFNAPLAHQMMAGADVLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIMEGKTGFHMGHLSVDCNVVEPADVKKVVTTLKRAVKVVGTPAYHEMVKNCMIQDLSWKGPAKNWEDVLLELGVEGSEPGVIGEEIAPLAMENVAAP", "cigar": 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"Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 108, 135, 168, 220, 253, 371, 431, 495, 524, 567 ] }, { "node_id": 4737232, "distance_to_parent": 0.002017, "left_index": 656, "right_index": 665, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 3, "children": [ { "node_id": 425966, "distance_to_parent": 0.022605, "left_index": 663, "right_index": 664, "protein_stable_id": "TRIAE_CS42_7AS_TGACv1_569477_AA1817020.1", "gene_stable_id": "TRIAE_CS42_7AS_TGACv1_569477_AA1817020", "sequence": 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"Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 107, 134, 167, 219, 252, 370, 430, 494, 523, 566 ] }, { "node_id": 4737234, "distance_to_parent": 0.017291, "left_index": 657, "right_index": 662, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 426001, "distance_to_parent": 0.003081, "left_index": 660, "right_index": 661, "protein_stable_id": "EMT03866", "gene_stable_id": "F775_26650", "gene_display_label": "WX-TTD", "gene_description": "Granule-bound starch synthase 1, chloroplastic/amyloplastic", "sequence": 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"Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 120, 147, 180, 210, 232, 265, 302, 383, 442, 506, 535, 578 ] } ], "representative": { "id": "GSMUA_Achr1G08190_001", "score": -99.923469 } }, { "node_id": 4737196, "distance_to_parent": 0.034042, "left_index": 634, "right_index": 643, "taxon_id": 214687, "taxon_name": "Musa acuminata subsp. malaccensis", "node_type": "duplication", "bootstrap": 90, "duplication_confidence_score": 1, "children": [ { "node_id": 425996, "distance_to_parent": 0.054162, "left_index": 641, "right_index": 642, "protein_stable_id": "GSMUA_Achr1P06140_001", "gene_stable_id": "GSMUA_Achr1G06140_001", "gene_description": "Granule-bound starch synthase 1, chloroplastic/amyloplastic", "sequence": 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"representative": { "id": "OPUNC06G01860", "score": -149.461981 } } ], "representative": { "id": "AT1G32900", "score": -174.599654 } } ], "representative": { "id": "AT1G32900", "score": -174.548555 } }, { "node_id": 4736907, "distance_to_parent": 0.052386, "left_index": 619, "right_index": 628, "taxon_id": 3193, "taxon_name": "Embryophyta", "node_type": "speciation", "bootstrap": 92, "children": [ { "node_id": 425750, "distance_to_parent": 0.256289, "left_index": 626, "right_index": 627, "protein_stable_id": "EFJ24731", "gene_stable_id": "SELMODRAFT_149847", "gene_description": "Granule bound starch synthase", "sequence": 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"432D4M91D3M164DMDM463D3M440D7M109D3M341D5M586D2M87DMDM221DMD3M13D4M14D4M8D3M97DM185D2M58D4M18DM8DM19D7M238D7M43D2M14D4M64DM12D5MD4M428DM10D5M11DM51D16M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D16M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "assembly": "ASM242v1", "representative": { "id": "PP1S27_45V6", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 98, "end": 359, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 410, "end": 537, "name": "Glyco_trans_1", 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"432D4M91D3M164DMDM463D3M440D7M109D3M341D5M586D2M87DMDM221DMD3M13D4M14D4M8D3M97DM185D2M58D4M18DM8DM19D7M238D7M43D2M14D4M64DM12D5MD2MDM428DM10D5M11DM51D16M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M4D4MDM33D2M5D4M2D7M3D13M7D18M14D18M12D2M26D13M25D3M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD11M14DM9D3M3D13M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D16M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM21D3M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D3M149DM287DM172D4M351D", "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "assembly": "ASM242v1", "representative": { "id": "PP1S33_144V6", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 98, "end": 357, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 411, "end": 535, "name": 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"MTVAEIAKSERPMKIVFVSAECAPWSKTGGLGDVVGSLPVELAKRGHKVMTISPRYDQYKGAWDTSVHVEALGKSVGFFHEKKKGVDRVFVDHPDFLAKVWGKTGSKLYGEKSGHDFADNQDRFAMFCHAAIKAPAALTELGFGEDVVFVANDWHSALVPVILNKVMKPAGQFTKAKCAMTIHNIAFQGRFFPQPMATYGLPDSAADDFFFEDGYSKVYDETNPAKEDGKEEFDGKIYRKANWLKAGFMNADKNLTVSENYAKEIASSKAKGVELDDVIREFGMEGIVNGMDPTEWNPSSDKFIDVPYDKTTVVEGKAAAKQALQAEVGLPLDADAPVFGYIGRLEEQKGCDIMMAAIPKLLKQVPNAQVVILGTGKKSMEKALEKLDEAEPMCAGVVKFSAPLAHFITAGADFLMVPSRFEPCGLIQLHAMQYGTVPVVASTGGLVDTVKEGVTGYHMGAMDADTLLPADVDAMVETCAAAAADYGTPLYTKMSSTCISQDLSWAEPAKKWEGVLEEMYFGTPEAVKKAEVVVPIAKADAIAATA", "cigar": "432D4M91D2M165D2M465D2M440D2M2720D12M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M3D3M44D4M2D7M3D13M7D18M14D18M12D2M26D4M32D5M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD26M9D19M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D14M10D4M26DM2DM8D2M17DM30D5M12D6M2D6MDMDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2M3D11M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6D2M19D4M7D3M198DM273D3MD2M47DM255DM11D2M171DM9D3M628D4M101D4M228D", "taxon_id": 436017, "taxon_name": "Ostreococcus lucimarinus CCE9901", "assembly": "ASM9206v1", "representative": { "id": "OSTLU_49880", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 14, "end": 281, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 332, "end": 467, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ] }, { "node_id": 425916, "distance_to_parent": 0.174183, "left_index": 613, "right_index": 614, "protein_stable_id": "EDP00372", "gene_stable_id": "CHLREDRAFT_503", "gene_description": "Granule-bound starch synthase I", "sequence": "MAVASTSRPSSARPIVINAASFGVKKTANQLLRELARGSARKSTSRSAVTGATGATCALDIVMVAAEVAPWSKTGGLGDVTGGLPIELVKRGHRVMTIAPRYDQYADAWDTSVVVDIMGEKVRYFHSIKKGVHRVWIDHPWFLAKVWGKTGSKLYGPRSGADYLDNHKRFALFCKAAIEAARVLPFGPGEDCVFVANDWHSALVPVLLKDEYQPKGQFTKAKSVLAIHNIAFQGRMWEEAFKDMKLPQAAFDKLAFSDGYAKVYTEATPMEEDEKPPLTGKTYKKINWLKGGIIAADKLVTVSPNYATEIAADAAGGVELDTVIRAKGIEGIVNGMDIEEWNPKTDKFLSVPYDQNSVYAGKAAAKEALQAELGLPVDPTAPLFAFIGRLEEQKGVDIILAALPKILATPKVQIAILGTGKAAYEKLVNAIGTKYKGRAKGVVKFSAPLAHMLTAGADFMLVPSRFEPCGLIQLHAMHYGTVPVVASTGGLVDTVKEGVTGFHMGALNPDKLDEADADALAATVRRASEVFAGGRYPEMVANCISQDLSWSKPAQKWEGLLEEVVYGKGGVATAKKEEIKVPVAEKIPGDLPAVSYAPNTLKPVSASVEGNGAAAPKVGTTAPAMGAWRATTPSGPSPAAATPKVTTYKPALPATAKPKTAGLKLAGEASTTSTSENGAASNGNGNGASASKTSAAKPLVSAATRKSA", "cigar": "432D4M91D2M165D3M463D3M440D7M1043D3M315DM13D4M14D4M8D3M97DM246D3M48D2M242D7M43DM2D8M92DM513D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M37D4M3D3M44D4M2D7M3D13M7D18M14D18M12D2M26D3M33D5M8D5MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD26M9D19M6D22M6D10M9D12MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D12MDM10D4M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D3M18D4MD4M12D2M3D11M8DM7DM20D4M13D4M15DM28D3M34D5M18DM52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6D2M19D4M7D4M183DM13DM273D3MD2M47DM255DM11D2M171DM9D36M7D9M23D2M66D6MD3M287DM172D8M9D5M101D14M10D4M4D3M3D21M11D9M85D5M63D", "taxon_id": 3055, "taxon_name": "Chlamydomonas reinhardtii", "assembly": "v3.1", "representative": { "id": "CHLREDRAFT_503", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 61, "end": 325, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 378, "end": 518, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 101, 164, 209, 262, 325, 504 ] } ], "representative": { "id": "CHLREDRAFT_503", "score": -99.825817 } } ], "representative": { "id": "AT1G32900", "score": -174.130433 } } ], "representative": { "id": "AT1G32900", "score": -174.09085000000002 } }, { "node_id": 4737342, "distance_to_parent": 0.070168, "left_index": 4, "right_index": 609, "taxon_id": 33090, "taxon_name": "Viridiplantae", "node_type": "duplication", "bootstrap": 40, "duplication_confidence_score": 0.9535, "children": [ { "node_id": 4737346, "distance_to_parent": 0.116566, "left_index": 203, "right_index": 608, "taxon_id": 33090, "taxon_name": "Viridiplantae", "node_type": "speciation", "bootstrap": 77, "children": [ { "node_id": 4737359, "distance_to_parent": 0.214361, "left_index": 602, "right_index": 607, "taxon_id": 3055, "taxon_name": "Chlamydomonas reinhardtii", "node_type": "duplication", "bootstrap": 100, "duplication_confidence_score": 1, "children": [ { "node_id": 425928, "distance_to_parent": 0, "left_index": 605, "right_index": 606, "protein_stable_id": "EDO96030", "gene_stable_id": "CHLREDRAFT_109372", "gene_description": "Predicted protein", "sequence": "RLVAVSNGYAWECQTVEGGWGLHEVIKVNNWKLRGIVNGIDYKEWNPICDEFLTTDGYAHYDVDTLAEGKAKCKAALQKELGLPVDPDAPMLGFIGRLDYQKGVDLIRDNYDYIMGEKCQLVMLGSGRQDLEDALRDMENRNKNQCRGWVGFSNKMAHRITAAADILLMPSRFEPCGLNQLYAMAYGTVPIVHSVGGLRDTVKQYSPFENVGTGWVFERAEANKLRESINNALYTYRQFRDSFRGIQRRGMEQDLTWDNAASIYEEVLVAAKYQW", "cigar": "5112D15MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 3055, "taxon_name": "Chlamydomonas reinhardtii", "assembly": "v3.1", "representative": { "id": "CHLREDRAFT_109372", "score": 0 }, "domains": [ { "id": "IPR001296", "root": 1296, "start": 86, "end": 233, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 54, 141, 221 ] }, { "node_id": 425672, "distance_to_parent": 0, "left_index": 603, "right_index": 604, "protein_stable_id": "EDP04319", "gene_stable_id": "CHLREDRAFT_183277", "gene_description": "Soluble starch synthase II", "sequence": "MQTCMSPPGTSRSAALPQRTAAPNAARLGVTQNGLASPSGRGARSRNGRPTFAGVPRAGDGRLSDVQRDLLAEIEARRKNQAQLLEKLNRLAAETAARTAATPASAAPPAPPAAAMPAPAPEVQVAVPMSVPMPAMASVASSPSSAWKSVPVSQPVRTAPPPPPPTPSVPIFELSLPLESEMYIEPAAPVAEAPEAEEEEPPAVEKPPPLAGPNVMNVVMVGAECAPWSKTGGLGDVMAALPKALVRRGHRVMVVVPRYENYDNAWETGIRKIYSVFNSNQEVGYFHAFVDGVDYVFVDHPTFHGRGKNIYGGERQEILFRCALLCKAALEAVWHVPCGGITYGDDNLCFIANDWHTALLPVYLQAHYRDYGKMTYARCAFVIHNMAHQGRGPFVESEHLELNEEYRERFRLYDPIGGEHMNVMKAGLECAHRLVAVSNGYAWECQTVEGGWGLHEVIKVNNWKLRGIVNGIDYKEWNPICDEFLTTDGYAHYDVDTLAEGKAKCKAALQKELGLPVDPDAPMLGFIGRLDYQKGVDLIRDNYDYIMGEKCQLVMLGSGRQDLEDALRDMENRNKNQCRGWVGFSNKMAHRITAAADILLMPSRFEPCGLNQLYAMAYGTVPIVHSVGGLRDTVKQYSPFENVGTGWVFERAEANKLRESINNALYTYRQFRDSFRGIQRRGMEQDLTWDNAASIYEEVLVAAKYQW", "cigar": "309D4M119D4M91D4M163D2M464D3M230DM7D4M37D3M158D10M59D5M12DM30D2M35DMDM55D4M19DM43D3M7D5M166D5MD2M659DM12DMDM221DMD3M14DM28DM12D4M60D5M18D9MD5M36D3M45D5MD6MD12M77D7M69D6M11D5M64D3M18D9M23D7M46D6MD2M42D9M13D6M19DM22D13M5D4M64D4M8D6M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M14DM14D4M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 3055, "taxon_name": "Chlamydomonas reinhardtii", "assembly": "v3.1", "representative": { "id": "CHLREDRAFT_183277", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 217, "end": 459, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 518, "end": 665, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 45, 73, 173, 232, 282, 327, 365, 486, 573, 653 ] } ], "representative": { "id": "CHLREDRAFT_183277", "score": -100 } }, { "node_id": 4737361, "distance_to_parent": 0.122783, "left_index": 204, "right_index": 601, "taxon_id": 3193, "taxon_name": "Embryophyta", "node_type": "dubious", "bootstrap": 21, "duplication_confidence_score": 0, "children": [ { "node_id": 4737364, "distance_to_parent": 0.143529, "left_index": 219, "right_index": 600, "taxon_id": 3398, "taxon_name": "Magnoliophyta", "node_type": "duplication", "bootstrap": 8, "duplication_confidence_score": 0.5385, "children": [ { "node_id": 4737365, "distance_to_parent": 0.137593, "left_index": 394, "right_index": 599, "taxon_id": 3398, "taxon_name": "Magnoliophyta", "node_type": "speciation", "bootstrap": 37, "children": [ { "node_id": 4737465, "distance_to_parent": 0.07245, 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"MPAPMAASTFPVAPLHAPPLVRPRVVPPSPTFGCCCRCSAPRGGLTLRPQACAPRRRCNPAIRPVRFCAEVGSVWPVVLTRSIRRGFQKGISVARVDDNAAGQVSLGDDNEDLDHITNETLRTTIRKSKEVLARHKIIMNQISEKKQLISTILDSSIHNEQEPLSGQSDGSLSNLNAIAKGTEIGYDHQTYHNRSLQQYEFDTTYGESIYDQNTYYESSEDDGTDFSENYQYKSFPRATRSVYELEEDNGMKQGYVVQLSQASGHEQSVNEGTNDNASEVDVMNVILVAAECAPWSKTGGLGDVAGALPKALAKRGHRVMVVVPKYGDYEEPQEIGEPRSYHVAGQDMEVKYYHAYIDGVDFVFIDNPVFHYVQSEIYGGDQTDIWKRMVLLCKAAVEVQWYVPCGGFCYGDGNLVFIANDWHTALLPVYLKAYYRDNGFMPYARSVLVIHNIAHQGRGPIDDFRYLDLPGHYMDQFKLYDPFGGDHLNIFAAGIRAADRLLTVSHGYAWELKTPDGGWGLHSIINENDWKFQGIVNGIDTADWNPRHDVHLQSDGYTNYSLETVQTGKAQCKEALQKELGLPVRGDVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRRLESQHYDRVRGWVGFSVRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVQHYNPYEEVGVGWTFEKAEANRMIDALGHCLNTYRNYWSSWEGIQRRGMMQDLSWDNAAKLYEEVLLAAKYQW", "cigar": "7DM16DM405D5M92D2M86D2M16DM60D3M463D2M151D6M34D4MD5M25D4M9D4M5D2MD4M18D2M5D5M154D5M9D3M54D7M3DM6DM29D3M24D2M3D2MD4MDM53D6M39D3M14D11M4D4M169D5MD3M119D6M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD5M18D4M11D6M45D5MD6MD12M54D10M45D7M6D4M16DM30D3M85D3M2D4M20D3M52D6MD2M20D9M14D9M12D4M44D13M5D4M79D2M4D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4577, "taxon_name": "Zea mays", "assembly": "AGPv4", "representative": { "id": "Zm00001d014150", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 284, "end": 526, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 586, "end": 732, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 64, 141, 299, 320, 346, 383, 398, 456 ] }, { "node_id": 425735, "distance_to_parent": 0.016767, "left_index": 589, "right_index": 590, "protein_stable_id": "KXG38467", "gene_stable_id": "SORBI_001G239500", "gene_description": "hypothetical protein", "sequence": "MAASTFLVAPVHAPPPPLVRPRVVPPPGTCGCPAPRGGLTLRPHACAPRRRCNPAIRPVRFCVEVGSGWPVVLNQSIKRGFHKGISVARVDDNAAGQVSVDDDDDDDEDLAHITSENVRAAIRKSKEVLARHKVIMKQIAEKKKLLSTILDSSIHNEQEPLSGQSDGSLSNLNANAEVTEIGYGSSQQSEFDTTYGESIYNQNEYYESSKHDGTDFSENYQYNSFPRAARSVYELEADNGMKQDYGVQLSQVSEHEQSVNEGTNDDASGGVDVMNVILVAAECAPWSKTGGLGDVAGALPKALARRGHRVMVVVPKYGDYEEPQEIGEPRSYLVAGQDMEVKYYHAYIDGVDFVFIDNPVFHYVQSEIYGGNRTDIWKRMVLLCKAAVEVQWYVPCGGFCYGDGNLVFIANDWHTALLPVYLKAYYRDNGFMPYARSVLVIHNIAHQGRGPIDDFSYLDLPGHYMDQCKLYDPFGGDHLNIFAAGIRAADRLLTVSHGYAWELKTPDGGWGLHSIINENDWKFQGIVNGIDTTDWNPRHDVHLQADGYTNYSLETVQTGKAQCKEALQKELGLPVRADVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLILLGTGRQDLEDTLRRLESQHYDRVRGWVGFSVRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVAHYNPYEEVGVGWTFEKAEANRMIDALGHCLNTFRNYRSSWEGIQRRGMMQDLSWDNAAKLYEEVLLAAKYQW", "cigar": "432D3M92D2M86D2M16DM60D3M463D3M149D7M34D4MD4M29DM9D4M5D2MD4M18D2M5D5M154D5M9D3M54D7M3DM6DM29D3M24D2M3D2MD4MDM53D6M39D3M14D11M4D7M166D5MD3M119D6M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD5M18D4M11D6M45D5MD6MD5M61D10M45D7M6D4M16DM30D3M85D3M2D4M20D3M52D6MD2M20D9M14D9M12D4M44D13M5D4M79D3M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4558, "taxon_name": "Sorghum bicolor", "assembly": "Sorghum_bicolor_v2", "representative": { "id": "SORBI_001G239500", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 275, "end": 517, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 578, "end": 719, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 58, 138, 290, 311, 337, 374, 389, 447 ] } ], "representative": { "id": "SORBI_001G239500", "score": 0.016767 } } ], "representative": { "id": "Si034299m.g", "score": 0.047722 } }, { "node_id": 4737477, "distance_to_parent": 0.012969, "left_index": 517, "right_index": 586, "taxon_id": 359160, "taxon_name": "BEP clade", "node_type": "speciation", "bootstrap": 49, "children": [ { "node_id": 4737481, "distance_to_parent": 0.042509, "left_index": 568, "right_index": 585, "taxon_id": 147368, "taxon_name": "Pooideae", "node_type": "speciation", "bootstrap": 78, "children": [ { "node_id": 425968, "distance_to_parent": 0.037188, "left_index": 583, "right_index": 584, "protein_stable_id": "BRADI3G27260.1", "gene_stable_id": "BRADI3G27260", "sequence": "MAASSSSLLHPSPAALLVHGASPRPPAGGAPAAASSSCRCYGRPPAPRGGLLLRPPARGPRRRPAASRPARFCGNGVYEGPAVLRVRHSTKWGPGKVLCAAGRDDDAGYQTGEDGSHDGDGVRVSNEALRATIRKSREVLAMHRDLLEQISEKKKLITIIEASSMHNEQEPLSGDSISRLDAISEGNEIGYDLQMYLDRRSYKSEAGTIHGESISDQNEYYGSLEGKLSSTDVNGSSNKVSSEHYLYDSAAPNVYEPQYVNGVKQDFVAQLSQISEKEQSVTEGINNNSSSSAGVDVMNVILVAAECAPWSKTGGLGDVAGALPKALSKRGHRVMVVVPMYQNYEEPRQIGESKRYQIAGQDMEVKYCHAYIDGVDFVFIDNPIFHNASSEIYGGDRTDILKRMVLLCKAAVEAPWCVPCGGFCYGDGNLVFIANDWHTALLPVYLKAYYRDNGFMIYARCVLVIHNIAHQGRGPLDDFSYLDLSSNYMDLFKHHDPFGGDHLNIFAAGIKAADRLVTVSHGYSWELKTPEGGWGLHGIINESDWKFQGIVNGIDTTEWNPRSDVHLKSDGYINYSLETVQTGKAQCKAALQKELGLPVRSDVPVIAFIGRLDNQKGVDLIAEAMPWIAGQGVQVILLGTGRQDLEDTLRRLESQHYDRVRGWVGFSVRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVQHYNPYEEAGLGWTFEMAEANRMIDALGHCLTTYRNYRTSWEGLQRRGMMQDLSWDNAAKSYEEVLVTAKYQW", "cigar": "432D3M92D2M165D3M463D3M147D7M36D4MD9M10D2M8D5M9D4MD6MD4M18D2M5D5M154D4M10D3M54D8M9D4M26D3M8D8M7D4M2D2M105D3M14D11M4D5M168D5MD3M119D6M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD5M18D4M14D3M45D5MD6MD12M54D10M45D7M6D4M16DM30D3M85D9M20D9M27DM17D10M24D5M14D9M12D4M44D13M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 15368, "taxon_name": "Brachypodium distachyon", "assembly": "v1.0", "representative": { "id": "BRADI3G27260", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 299, "end": 541, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 601, "end": 743, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 69, 149, 314, 335, 361, 398, 413, 471 ] }, { "node_id": 4737482, "distance_to_parent": 0.064054, "left_index": 569, "right_index": 582, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 1, "children": [ { "node_id": 425839, "distance_to_parent": 0.007959, "left_index": 580, "right_index": 581, "protein_stable_id": "TRIAE_CS42_1AL_TGACv1_000065_AA0001960.1", "gene_stable_id": "TRIAE_CS42_1AL_TGACv1_000065_AA0001960", "sequence": "MAATSSSFFAPPPAALLRHGASPRPTAAASPSSSFRCHGRLQRPSVRVPRRRPAIPAAARPVRFCVNGVYGWPAVLRGWTKRGSRKCLCAAGAHDDAVNQVGEDADHDDDDVRVSNEALRATIRKSREVLAMHRDLLDQISEKKKLISVIEASSIHNGQEPFSGSPFSRSDAVSEGEEIGYDLQMYLDRRSQKSEIRSTHGESISGQHEYYGSLEDKLSYTDVNGSYSKDYEKGHSVTEEIDDNSSSSAAVDVMNIILVAAECAPWSKTGGLGDVAGALPKALSKRGHRVMAIVPMYGNYEEPRQIGEPKRYQVAGQDMEVKYYHAYIDGVDFVFIDNPIFHNVESEIYGGDRTVNFFLQDILKRMILLCKAAVEAPWCVPCGGFCYGDGNLVFIANDWHTALLPVYLKAYYRDNGFMIYARSVLVIHNIAHQGRGPLDDFSYLDLPSNYLDLFKHHDPFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTPEGGWGLHGIINESDWKFQGIVNGIDTTDWNPRCDVHLKSDGYSNYSLVTVETGKAQCKAALQKELGLPVRGDVPVIAFIGRLDNQKGVDLIAEAMPWIAGQDVQVILLGTGRQDLEDTLRRLESQHYDRVRGWVGFSVRLAHRMTAGTDILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVQHYNPYEEAGLGWTFENAEANRMIDALGHCLNTYRNYKSSWEGLRRRGMMQDLSWDTAAKRYEEVLVAAKYQW", "cigar": "432D3M92D2M165D3M463D3M148D7M35D4MD9M21D4M9D3M10D3M18D2M5D5M154D5M7D5M54D7M3DM6D4M53D2M3D2MD3M54D8M39D3M14D11M4D4M2DM166D5MD3M119D6M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD5M18D3M14D4M45D5MD6MD12M54D10M45D7M6D4M16DM30D3M85D9M20D3M128DM44D13M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D11M12D20M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_1AL_TGACv1_000065_AA0001960", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 255, "end": 503, "name": "Starch_synth_cat_dom", "description": 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"MAATSSSFFAPPPAALLRHGASPRPTAAASPSSSCRCHGRLQRPSVRLPRRRPAAARPVRFCVNGVYGWPAVPRGWTKRGPTKGLCAAGAHDDAVNQVGEDVDDDGNGVRVSNEALRATIRKSREVLAMHRDLLDQISEKKKLISVIEASAIHNGQEPFSGSPFSSSDAVSEGKEIGYDLQMYLDRRSQKSEIRSTHGESISGQHEYYGSLEGKLSNTDVNGSKDYEKGHSVTEEINDNSSSSAAVDVMNIILVAAECAPWSKTGGLGDVAGALPKALSKRGHRVMAIVPMYGNYEEPHQIGEPKRYQVAGQDMEVKYHHAYIDGVDFVFIDNPIFHNVESEIYGGDRTVSNDILKRMILLCKAAVEAPWCVPCGGFCYGDGNLVFIANDWHTALLPVYLKAYYRDNGFMIYARSVLVIHNIAHQGRGPLDDFSYLDLPSNYMDLFKHHDPFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTTEGGWGLHGIINESDWKFQGIVNGIDTTDWNPRCDVHLKSDGYSNYSLETVETGKAQCKAALQKELGLPVRGDVPVIAFIGRLDNQKGIDLIAEAMTWIAGQDVQVILLGTGRQDLEDTLRRLESQHYDRVRGWVGFSVRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVQHYNPYEEAGVGWTFENAEANRMIDALGHCLNTYRNYKSSWEGLRRRGMMQDLSWDTAAKRYEEVLVAAKYQW", "cigar": 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"Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 555, "end": 699, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 58, 136, 224, 265, 286, 312, 352, 367, 425 ] }, { "node_id": 4737485, "distance_to_parent": 0.004218, "left_index": 571, "right_index": 576, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 426040, "distance_to_parent": 0.08224, "left_index": 574, "right_index": 575, "protein_stable_id": "EMT20525", "gene_stable_id": "F775_23677", "sequence": "MYATCDMRVDDNGGLAGLSSVQRCAALVDDSGSGKKPGRWLGAPYSVLLDGLNAESVQSGCFSCTEKRSCKPTVGSSHYSRLSLGSGLPPQTNTSLADTFCPHSCAPRETSESVIHPHIALSQARLTRRFLGDELPEKKMHLVTRGLLSHAATLEGSTGYHNGASKENDAVAPPSPLSFASHHHQWLWLGKDFTLALDRQPQKTTNATMSIGEGAGEWLAACGCQAEEVPGSMGARRRPDLMEQWPHRSGPPVDPRWMLRRAAPLAQSTTHQGDAGQDHSDTTQPGYGDQRMWGKALLRAIVPMYGNYEGPHQIGEPKRYQVAGQDMEVKYHHAYIDGVDFVFIDNPIFHNVESEIYGGDRTDILKRMILLCKAAVEAYYRDNGFMIYARSVLVIHNIAHQGRGPLDDFSYLDLPSNYMDLFKHHDPFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTPEGGWGLHGIINESDWKFQGIVNGIDTTDWNPRCDVHLKLDGYSNYSLETVETGKAQCKAALQKELGLPVRGDVPVIAFIGRLDNQKGVDLIAEAMPWIAGQDVQVILLGTGRQDLEDTLRRLESQHYDRVRGWVGFSVRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVQHYNPYEEVGLGWTFENAEANRMIDALGHCLNTYRNYKSSWEGLRRRGMMQDLSWDTAAKRYEEVLVAAKYQWVRVRVSRWLASRDMHVSVEGCPSNRHMERWCVLASPWEMRCRRRSGPEQDTSYEVPVAGYKKEHIRVQLVRSHGLVVVRGERAVAGNRWSRFRLEFGVPGGCDLKGIHARFEGGVVRVTMPGLRTAAVGDVSGKQVPPAAKADASGVRAGDKEDENVQKQPAEERGADEVKDSGRLDQGQGTPADGVRGVESPATASGRGYSYLPARRKLVTTVVGAVLVLFSLGIYVRYSFGP", "cigar": "432D3M727DM228D2M42D3M249DMDM29D3M57DM35D4M39D3M14D11M6D5M27DMDM133D2M667D2M12DMDM221DMD6M9DMD2M27D2M4D5MD5M60DM22D9MD6M35D3M45D5M13D7M108D8M52D4MD3M38D2M136D2M18D16M13D5M12D8M17D7M15D14M5D4M64DM12D5M3D2M428D4M3D11M2D4M3DM51D16M26D3M4DM38DM5D2M79D41M5D2MD3M6D2M2DM6D20M2D5M12D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M113D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM74D11M14D5M9D5M27D6M45D11M20D19M2D9M7D2M73D10M82D5M2D4M48D3M19D5M10D19M13D20MDM11D2M171DM9D3M18D4M18D5M102D3M6D2M279DM172D6M12D3M103D10M10D7M4D3M4D20M11D8M32D8M7D3M33D9M16DM45D", "taxon_id": 37682, "taxon_name": "Aegilops tauschii", "assembly": "ASM34733v1", "representative": { "id": "F775_23677", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 378, "end": 471, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 531, "end": 674, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" }, { "id": "IPR008978", "root": 8978, "start": 770, "end": 842, "name": "HSP20-like_chaperone", "description": "HSP20-like chaperone" } ], "exon_junctions": [ 48, 77, 218, 299, 325, 362, 377, 401, 719, 771 ] }, { "node_id": 425772, "distance_to_parent": 0.001775, "left_index": 572, "right_index": 573, "protein_stable_id": "TRIAE_CS42_1DL_TGACv1_061908_AA0205540.1", "gene_stable_id": "TRIAE_CS42_1DL_TGACv1_061908_AA0205540", "sequence": "MAATSSSFFAPPPAALLRHGASPRPTAAASPSSSWRCHGRLQRPSVRVPRRRPATPAAARPLRFCGNGVYGWPAVPRGWTKRGPTKGLCAAGAHDDAVNQVGEGVDHDDNGVRVSNEALRATIRKSREVLAMHRDLLDQIPEKKKLISIIEASSIHNGQEPFSGSPFSRSDAVSEGEEIGYDLQMYLDRRSQKSEIRSTHGESISGQHEYYGSLEGKLSNADVNGSYSKDYEKGHSVTEEINDNSSSSAAVDVMNIILVAAECAPWSKTGGLGDVAGALPKALSKRGHRVMAIVPMYGNYEEPHQIGEPKRYQVAGQDMEVKYHHAYIDGVDFVFIDNPIFHNVESEIYGGDRTDILKRMILLCKAAVEAPWCVPCGGFCYGDGNLVFIANDWHTALLPVYLKAYYRDNGFMIYARSVLVIHNIAHQGRGPLDDFSYLDLPSNYMDLFKHHDPFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTPEGGWGLHGIINESDWKFQGIVNGIDTTDWNPRRDVHLKLDGYSNYSLETVETGKAQCKAALQKELGLPVRGDVPVIAFIGRLDNQKGVDLIAEAMPWIAGQDVQVILLGTGRQDLEDTLRRLESQHYDRVRGWVGFSVRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVQHYNPYEEVGLGWTFENAEANRMIDALGHCLNTYRNYKSSWEGLRRRGMMQDLSWDTAAKRYEEVLVAAKYQW", "cigar": "432D3M92D2M165D3M463D3M148D7M35D4MD9M21D4M9D3M10D3M18D2M5D5M154D5M7D5M54D7M3DM6D4M53D2M3D2MD3M54D8M39D3M14D11M4D4M2DM166D5MD3M119D6M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD5M18D3M14D4M45D5MD6MD12M54D10M45D7M6D4M16DM30D3M85D9M20D3M128DM44D13M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_1DL_TGACv1_061908_AA0205540", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 255, "end": 497, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 557, "end": 700, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 61, 139, 229, 270, 291, 317, 354, 369, 427 ] } ], "representative": { "id": "TRIAE_CS42_1DL_TGACv1_061908_AA0205540", "score": 0.001775 } } ], "representative": { "id": "TRIAE_CS42_1DL_TGACv1_061908_AA0205540", "score": 0.005993 } } ], "representative": { "id": "TRIAE_CS42_1AL_TGACv1_000065_AA0001960", "score": 0.007959 } } ], "representative": { "id": "BRADI3G27260", "score": 0.037188 } }, { "node_id": 4737489, "distance_to_parent": 0.042107, "left_index": 518, "right_index": 567, "taxon_id": 147380, "taxon_name": "Oryzeae", "node_type": "dubious", "bootstrap": 89, "duplication_confidence_score": 0, "children": [ { "node_id": 425771, "distance_to_parent": 0.036901, "left_index": 565, "right_index": 566, "protein_stable_id": "OB10G18500.1", "gene_stable_id": "OB10G18500", "gene_description": "Uncharacterized protein", "sequence": "MAAAAASSLLAPAGSCYSPGCRSCSAPGGVPLRRPITAAPRPAWPVPRRSRLERGRVEAQLAAARTSCRAALQWLSSMASSHGSVGYESPVVFPGLTKPRSDRCLFAAVMVSNTGDQVGDGNDDEINVTNEKLRAVIRKSKEVLEIHRNLLEKISTSERKKLTSIIEDSSIYNEQDPFGQSDRYFSHLDEVPGDDEFGYGVQMYLDRHPDQSEGASAQDYVAQLNQISDMGQSVAEGTSADPSASSVVDLLNIILIAAECAPWSKTGGLGDVAGALPKALARRGHRVMVVVPMYENYAEPQQIGEPRRYQVAGQDMEVNYYHAYIDGVDYVFIDNPIFHHVENDIYGGDRTDILKRMVLLCKAAIEVPWYVPCGGFCYGDGNLVFIANDWHTALLPVYLKAYYRDNGFMIYARSVLVIHNIAHQGRGPLDDFSYLDLPAHYMDHFKHYDPFGGDHLNIFAAGIKAADRLLTVSHGYSWELKTAEGGWGLHGIINESDWKFQGIVNGIDTTDWNPRYDIHLKSDGYTNYSLETVQTGKQQCKAALQKELGLPVRGDAPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRRLESQHYDRVRGWVGFSVRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVEHYNPYEESGLGWTFEKAEANRMIDALGHCLNTYRNYKSSWEGLQKRGMMQDLSWDNAAKLYEEVLLAAKYQW", "cigar": "432D3M92D2M783D4M39D2MD4MD4M34D8M4D3M185D4M8D5M54D3M71D2M4DMD4MD21MD17M6D15M39D3M14D11M4D3M171D4MD3M119D6M454D10M66D4M12DMDM221DMD3M14DM28D2M10D5M60DM22D9MD5M18D4M12D5M45D5MD6MD12M54D10M59D3M16DM30D3M290D13M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4533, "taxon_name": "Oryza brachyantha", "assembly": "Oryza_brachyantha.v1.4b", "representative": { "id": "OB10G18500", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 252, "end": 494, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 553, "end": 696, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 42, 78, 153, 267, 288, 314, 351, 366, 424, 743 ] }, { "node_id": 4737490, "distance_to_parent": 0.015993, "left_index": 519, "right_index": 564, "taxon_id": 147380, "taxon_name": "Oryzeae", "node_type": "speciation", "bootstrap": 60, "children": [ { "node_id": 425941, "distance_to_parent": 0.022553, "left_index": 562, "right_index": 563, "protein_stable_id": "LPERR10G07960.1", "gene_stable_id": "LPERR10G07960", "sequence": "MPRLLGSRRRTDPTRPSPPPRVYRRGTSCELPSTQTSHTLPFSRRQHSVLTGWAVPRRSRSEWGRVEAQLAAVRTSCRAALQWLSSTAMPHGNIGHESPLVFPGLTKLGSSRCLCAAILVGNMGDHFGDDNNDEINVTNEKLRAVIRKSKEVLEIHRNLLEKISTSERKKITSIMKDSSIYNEQDPFGQSDSSFSHLDEVPDDDEFGYDLQMHLDTCPDQYEAVATQDYAAQLSQINEMGQSVAEGTSDDPSASAIVDLMNIILVAAECGLGDVAGALPKALARRGHRVMVVAPMYKNYTEPQQLGEPRRYQVAGQDMEVIYYHAYIDGVDFVFIDNPIFHHVENDIYGGDRTVPWYVPCGGYCYGDGNLVFIANDWHTALLPVYLKAYYRDNGFMLYARSVLVIHNIAHQGRGPLDDFSYLDLPVNYMDLFKLYDPFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTAEGGWGLHGIINESDWKFQGIVNGIDTTDWNPRSDIHLKSDGYTNYSLETVQAGKQQCKAALQKELGLPVRGDVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRRLESQHYDRVRGWVGFSVRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVEHYNPYNESGLGWTFEKAEANRMIDALGHCLNTYRNYKSSWEGLQKRGMMQDLSWDNAAKLYEEVLLAAKYQW", "cigar": "1441D6M154D5M6D6M54D7M40D29M4DMD4MD21MD17M6D15M39D3M14D11M4D3M171D4MD3M119D6M454D10M66D4M12DMDM221DMD3M14DM28D2M10D5M60DM22D9MD5M18D4M12D5M45D5MD6MD12M54D10M59D3M16DM30D3M290D13M5D4M64DM13D4M3D2M428DM81D11M162D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M45D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 77586, "taxon_name": "Leersia perrieri", "assembly": "Lperr_V1.4", "representative": { "id": "LPERR10G07960", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 262, "end": 481, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 541, "end": 683, "name": 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626, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 1, 140, 192, 213, 239, 276, 291, 349, 664, 702, 773, 826, 880 ] }, { "node_id": 425967, "distance_to_parent": 0, "left_index": 553, "right_index": 554, "protein_stable_id": "AMDW01039787.1_FGP001", "gene_stable_id": "AMDW01039787.1_FG001", "sequence": "GRGPLDDFSYLDLPVDYMDLFKLYDPFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTAEGGWGLHGIINESDWKFQGIVNGIDTTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELGLPVRVDVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRRLESQHYDRVRGWVGFSIRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVEHYNPYEESGLGWTFEKAEANRLIDALGHCLNTYRNYRTSWEGLQKRGMTQDLSWDNAAKLYEEVLLAAKYQW", "cigar": "5021D15M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4528, "taxon_name": "Oryza longistaminata", "assembly": "O_longistaminata_v1.0", "representative": { "id": "AMDW01039787.1_FG001", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 1, "end": 71, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 131, "end": 277, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ] } ], "representative": { "id": "AMDW01039787.1_FG001", "score": 0 } }, { "node_id": 4737498, "distance_to_parent": 0, "left_index": 522, "right_index": 551, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4737500, "distance_to_parent": 0.002557, "left_index": 529, "right_index": 550, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4737503, "distance_to_parent": 0, "left_index": 536, "right_index": 549, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4737509, "distance_to_parent": 0.000845, "left_index": 543, "right_index": 548, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 43, "children": [ { "node_id": 425898, "distance_to_parent": 0.000853, "left_index": 546, "right_index": 547, "protein_stable_id": "BGIOSGA033011-PA", "gene_stable_id": "BGIOSGA033011", "gene_description": "Putative uncharacterized protein", "sequence": "MPQLLGSRARRRAAPTFPAPAPDYRRGSPYLGSAEEEQVGVGACGGSEFGRSHQLPSSTAMAIIHGNQVGDDSDDGIKVTNEKLRAVIRKSKEVLEIHRNLLEKVHKLKIQDYYELPKISASERKKITSIIEDSSIYNEQDPFGQRDSSFYHLDEVPDDDEFSYDLQMYLDRHPDQSEVVATQDYEAQLSQISEMGQSVAEGTSDDPSASASVDLINIILVAAECAPWSKTGKIIIATYLLIFSVSMKGHCGFNLVPNIHSIHYTITGGLGDVAGALPKALARRGHRVMVVVPMYKNYAEPQQLGEPRRYQVAGQDMEVIYYHAYIDGVDFVFIDNPIFHHVENDIYGGDRTDILKRMVLLCKAAIEVPWYVPCGGYCYGDGNLVFLANDWHTALLPVYLKAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYLDLPVDYMDLFKLYDPFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTAEGGWGLHGIINESDWKFQGIVNGIDTTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELGLPVRGDVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRRLESQHYDRVRGWVGFSIRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVEHYNPYEESGIGWTFEKAEANRLIDALGHCLNTYRNYRTSWEGLQKRGMMQDLSWDNAAKLYEEVLLAAKYQW", "cigar": "1441D7M152D6M6D6M54D3M71D2M8D2MD15MD5M6D7M15D3M6D2M39D3M14D3M5D3M4D3M171D4MD3M119D6M454D10M66D4M12DMDM221DMD18M28D2M10D5M60DM22D9MD5M18D4M12D5M45D5MD6MD12M54D10M59D3M16DM30D3M290D13M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6D28M44D18M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 39946, "taxon_name": "Oryza sativa Indica Group", "assembly": "ASM465v1", "representative": { "id": "BGIOSGA033011", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 264, "end": 495, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 555, "end": 702, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 30, 66, 104, 118, 257, 268, 289, 315, 352, 367, 425 ] }, { "node_id": 425889, "distance_to_parent": 0, "left_index": 544, "right_index": 545, "protein_stable_id": "ONIVA10G10320.2", "gene_stable_id": "ONIVA10G10320", "sequence": "MAAAAVSSLLAPSGSCYSPGCHSCWGPGPGGGRRLPSPRRRPITAAARPTWAVPRRSRLEWGRVEAQNSGARTSCRAALQWLSSTARSHVNVGYGSPLVFPGLTKPGSSRCLCVVGMVGNAGNQVGDDSDDGIKVTNEKLRAVIRKSKEVLEIHRNLLEKISASERKKITSIIEDSSIYNEQDPFGQRDSSFYHLDEVPDDDEFSYDLQMYLDRHPDQSEVVATQDYEAQLSQISEMGQSVAEGTSDDPSASASVDLINIILVAAECAPWSKTGKIIIATYLLIFSVSMKGHCGLGDVAGALPKALARRGHRVMVVVPMYKNYAEPQQLGEPRRYQVAGQDMEVIYYHAYIDGVDFVFIDNPIFHHVENDIYGGDRTDILKRMVLLCKAAIEVPWYVPCGGYCYGDGNLVFLANDWHTALLPVYLKAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYLDLPVDYMDLFKLYDPFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTAEGGWGLHGIINESDWKFQGIVNGIDTTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELGLPVRGDVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRRLESQHYDRVRGWVGFSIRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVEHYNPYEESGLGWTFEKAEANRLIDALGHCLNTYRNYRTSWEGLQKRGMMQDLSWDNAAKLYEEVLLAAKYQW", "cigar": "432D3M92D2M783D4M39D2MD4MD4M34D11MD3M20DM4D3M157D4M8D5M54D3M71D2M4DMD4MD21MD17M6D15M39D3M14D11M4D3M171D4MD3M119D6M454D10M66D4M12DMDM221DMD3M14DM28D2M10D5M60DM22D9MD5M18D4M12D5M45D5MD6MD12M54D10M59D3M16DM30D3M290D13M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6D20M61D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4536, "taxon_name": "Oryza nivara", "assembly": "AWHD00000000", "representative": { "id": "ONIVA10G10320", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 294, "end": 520, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 580, "end": 727, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 49, 85, 160, 293, 314, 340, 377, 392, 450 ] } ], "representative": { "id": "ONIVA10G10320", "score": 0 } }, { "node_id": 4737515, "distance_to_parent": 0, "left_index": 537, "right_index": 542, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 425726, "distance_to_parent": 0.001692, "left_index": 540, "right_index": 541, "protein_stable_id": "ORUFI10G11670.1", "gene_stable_id": "ORUFI10G11670", "sequence": "MAAAAVSSLLAPSGSCYSPGCHSCWGPGPGGGRRLPSPRRRPITAAARPTWAVPRRSRLEWGRVEAQNSGARTSCRAALQWLSSTARSHVNVGYGSPLVFPGLTKPGSSRCLCVVGMVGNAGNQVGDDSDDGIKVTNEKLRAVIRKSKEVLEIHRNLLEKISASERKKITSIIEDSSIYNEQDPFGQRDSSFYHLDEVPDDDEFSYDLQMYLDRHPDQSEVVATQDYEAQLSQISEMGQSVAEGTSDDPSASAAVDLINIILVAAECAPWSKTGKIIIATYLLIFSVSMKGHCGFNLVPVSGLGDVAGALPKALARRGHRVMVVVPMYKNYAEPQQLGEPRRYQVAGQDMEVIYYHAYIDGVDFVFIDNPIFHHVENDIYGGDRTDILKRMVLLCKAAIEVPWYVPCGGYCYGDGNLVFLANDWHTALLPVYLKAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYLDLPVDYMDLFKLYDPFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTAEGGWGLHGIINESDWKFQGIVNGIDTTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAAFQKELGLPVRGDVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRRLESQHYDRVRGWVGFSIRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVEHYNPYEESGLGWTFEKAEANRLIDALGHCLNTYRNYRTSWEGLQKRGMMQDLSWDNAAKLYEEVLLAAKYQW", "cigar": 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"432D3M92D2M783D4M39D2MD4MD4M34D11MD3M20DM4D3M157D4M8D5M54D3M71D2M4DMD4MD21MD17M6D15M39D3M14D11M4D3M171D4MD3M119D6M454D10M66D4M12DMDM221DMD3M14DM28D2M10D5M60DM22D9MD5M18D4M12D5M45D5MD6MD12M54D10M59D3M16DM30D3M290D13M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4538, "taxon_name": "Oryza glaberrima", "assembly": "AGI1.1", "representative": { "id": "ORGLA10G0098400", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 259, "end": 501, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", 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"432DM1009D6M152D6M6D6M54D3M71D7MD4MD21MD17M6D15M39D3M14D11M4D3M171D4MD3M119D6M454D10M66D4M12DMDM221DMD3M14DM28D2M10D5M60DM22D9MD5M18D4M12D5M45D5MD6MD12M54D10M59D3M16DM30D3M290D13M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6D26M53D11M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 65489, "taxon_name": "Oryza barthii", "assembly": "O.barthii_v1", "representative": { "id": "OBART10G11180", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 273, "end": 505, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 565, "end": 712, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 30, 62, 137, 278, 299, 325, 362, 377, 435 ] } ], "representative": { "id": "OBART10G11180", "score": -150 } } ], "representative": { "id": "OBART10G11180", "score": -150 } }, { "node_id": 4737516, "distance_to_parent": 0, "left_index": 523, "right_index": 528, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 426032, "distance_to_parent": 0.011077, "left_index": 526, "right_index": 527, "protein_stable_id": "OGLUM10G10900.1", "gene_stable_id": "OGLUM10G10900", "sequence": "MASSSPRGHRQLARTAAHQKKKKIKTWNSTGVSSRGRVDSTTFSSSTPSPRIRISAAAAAAAAERARRFHYSSRWPTRVVGAAATTSNGGGGGRLLPPRPFGILLLPRMPQLLGSRARRRAAPTFPAPAPDYRRGTPLPRRSRLEWGRVEAQNSGARTSCRAALQWLSSMARSHVNVGYGSPLVLPGLTKPGSSRCLCVAGMVGNAGNQVGDDSDDGIKVTNEKLRAVIRKSKEVLEIHRNLLEKISTSERKKITSIIEDSSIYKEQDPFVQRDSSFYHLDEVPDDDEFSYDLQMYLDRRSDQSEVVATQDYAAQLSQISETGQSVAEGTSDDPSASAAVDLINIILVAAECAPWSKTGKIIIATYLLNVSVSMKGHCGFNLVPVSGLGDVAGALPKALARRGHRVMVVVPMYKNYAEPQQLGEPRRYQVAGQDMEVIYYHAYMDGVDFVFIDNPIFHHVENDIYGGDRTDILKRMVLLCKVAIEVPWYVPCGGYCYGDGNLVFLANDWHTALLPVYLKAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYLDLPVDYMDLFKLYDPFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTAEGGWGLHGIINESDWKFQGIVNGIDTTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELGLPVRGDVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRRLESQHYDRVRGWVGFSIRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVEHYNPYEESGLGWTFEKAEANRLIDALGHCLNTYRNYRTSWEGLQKRGMMQDLSWDNAAKLYEEVLLAAKYQW", "cigar": "432D3M92D4M54DM26D14M6D3M52DM4D4M615D8M34D4MD4MD32M4D13MD15M7D2M4D7M152D6M6D6M54D3M71D7MD4MD21MD17M6D15M39D3M14D11M4D3M171D4MD3M119D6M454D10M66D4M12DMDM221DMD3M14DM28D2M10D5M60DM22D9MD5M18D4M12D5M45D5MD6MD12M54D10M59D3M16DM30D3M290D13M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6D26M53D11M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 40148, "taxon_name": "Oryza glumipatula", "assembly": "ALNU02000000", "representative": { "id": "OGLUM10G10900", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 345, "end": 613, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 673, "end": 820, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 138, 170, 245, 386, 407, 433, 470, 485, 543 ] }, { "node_id": 426067, "distance_to_parent": 0.005123, "left_index": 524, "right_index": 525, "protein_stable_id": "OMERI04G07060.1", "gene_stable_id": "OMERI04G07060", "gene_display_label": "OMERI04G07060", "sequence": "MAAAAAAAVSSLLAPSGSCYSPGCHSCWGPGPGGGRLLPSPRRPPITAAARPTWAVPRRSRSEWGHVEAQLAAVRTGCRAALQWLSSTARSHVNVGYGSPLVLPGLTKPGSSRCLCVAGMVGSAGNQVGDDSDDGIKVTNEKLRAVIRKSKEVLEIHRNLLEKISTSERKKITSIIEDSSIYNEQDPFGQRDSSFYHLDEVPDDDEFSYEFSYLDRRPDQSEVVATQDYEAQLSQISEMGQSVAEGTSDDPSASAAVDLINIILVAAECAPWSKTGKIIIATYLLNVSVSMKGHCGFNLVPVSGLGDVAGALPKALARRGHRVMVVVPMYKNYAEPQQLGEPRRYQVAGQDMEVIYYHAYIDGVDFVFIENPIFHHVENDIYGGDRTDILKRMVLLCKAAIEVPWYVPCGGYCYGDGNLVFLANDWHTALLPVYLKAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYLDLPVDYMDLFKLYDPFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTAEGGWGLHEIINESDWKFQGIVNGIDTTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELGLPVRGDVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRRLESQHYDRVRGWVGFSIRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVEHYNPYEESGLGWTFEKAEANRLIDALGHCLNTYRNYRTSWEGLQKRGMMQDLSWDNAAKLYEEVLLAAKYQW", "cigar": 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"representative": { "id": "Bra021486", "score": -99.983618 } }, { "node_id": 4737428, "distance_to_parent": 0.001421, "left_index": 448, "right_index": 489, "taxon_id": 3700, "taxon_name": "Brassicaceae", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4737461, "distance_to_parent": 0.053993, "left_index": 483, "right_index": 488, "taxon_id": 3701, "taxon_name": "Arabidopsis", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425694, "distance_to_parent": 0.015472, "left_index": 486, "right_index": 487, "protein_stable_id": "AT3G01180.1", "gene_stable_id": "AT3G01180", "gene_display_label": "SS2", "gene_description": "Starch synthase 2, chloroplastic/amyloplastic", "sequence": "MASVAESSFPLLCQIKTQRRINSSTLRHSRVSYHDLPSGSLSFRSRSFVLGHRCKCVSRVEASGSDDDEPEDALQATIDKSKKVLAMQRNLLHQIAERRKLVSSIKESTPDLDDAKASSKQESASSVNANTDATKKEIMDGDANGSVSPSTYGKSSLSKEPEAKTFSPSTESLKNRKQSSASVISSSPVTSPQKPSDVATNGKPWSSVVASSVDPPYKPSSVMTSPEKTSDPVTSPGKPSKSRAGAFWSDPLPSYLTKAPQTSTMKTEKYVEKTPDVASSETNEPGKDEEKPPPLAGANVMNVILVAAECAPFSKTGGLGDVAGALPKSLARRGHRVMVVVPRYAEYAEAKDLGVRKRYKVAGQDMEVMYFHAFIDGVDFVFIDSPEFRHLSNNIYGGNRLDILKRMVLFCKAAVEVPWYVPCGGVCYGDGNLAFIANDWHTALLPVYLKAYYRDHGIMKYTRSVLVIHNIAHQGRGPVDDFSYVDLPSHYLDSFKLYDPVGGEHFNIFAAGLKAADRVLTVSHGYSWEVKTLEGGWGLHNIINENDWKFRGIVNGIDTQEWNPEFDTYLHSDDYTNYSLENLHIGKPQCKAALQKELGLPVRPDVPLIGFIGRLDHQKGVDLIAEAVPWMMSQDVQLVMLGTGRPDLEEVLRQMEHQYRDKARGWVGFSVKTAHRITAGADILLMPSRFEPCGLNQLYAMNYGTIPVVHAVGGLRDTVQQFDPYSETGLGWTFDSAEAGKLIHALGNCLLTYREYKESWEGLQRRGMTQDLSWDNAAEKYEEVLVAAKYHW", "cigar": "432D2M93D3M164D2M466DM151D3M130DM150D8MD9M94D8MD3M12D3M76D5M21D6M9D3MD3M14D4M3D3M179DM127D5M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD5M36D3M45D7M3DM2D6M4D2M3D6M47D8M2D9M2D12M20D7M6D3M45D2MD5M64D7M2DM11D7M20D37M3D6MDM5D8MD2M19D11M16D5M13DM27D4M16D10MD2M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 3702, "taxon_name": "Arabidopsis thaliana", "assembly": "TAIR10", "representative": { "id": "AT3G01180", "score": -175 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 302, "end": 544, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 605, "end": 744, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 94, 317, 338, 364, 401, 416, 474 ] }, { "node_id": 425809, "distance_to_parent": 0.007311, "left_index": 484, "right_index": 485, "protein_stable_id": "fgenesh2_kg.3__112__AT3G01180.1", "gene_stable_id": "fgenesh2_kg.3__112__AT3G01180.1", "gene_display_label": "AtSS2", "gene_description": "Putative uncharacterized protein", "sequence": "MASVAESSFPLLCQIKTQRRVVTSSTLRNSSLVRVSYPELPSGSLSFRCRSFVYGHRWKCVRRVEATGSDSSESASGGDEPEDALQATIEKSKKVLAMQRNLLQQIAERRKLVSSIKESTPNLDDGKASSKEEYGSSVIANTDATKKETMDGDGNRSVSPSSYGKSSLNKEPEAKSLSPSTESLKNSKQSSASVTSPEKPSDVAANGKPWSSVVASSLDPPYKPSSVVTSPEKTSPEKPSKSRAGAFWSDPLPSYLTKAPETSSMKTEEYVETREEKTPEVASSETNEPGKDEEKPPPLAGANVMNVILVAAECAPFSKTGGLGDVAGALPKALARRGHRVMVVVPRYAEYAEAKDLGVRKRYKVAGQDMEVMYFHAYIDGVDFVFIDSPVFRHLSNNIYGGNRLDILKRMVLFCKAAVEVPWYVPCGGVCYGDGNLAFIANDWHTALLPVYLKAYYRDHGIMKYTRSVLVIHNIAHQGRGPVDDFSYVDLPNHYLDSFKLYDPVGGEHFNIFAAGLKAADRVLTVSHGYSWEVKTLEGGWGLHNIINENDWKFRGIVNGIDTQEWNPKFDTYLHSDDYTNYSLENLHIGKPQCKAALQKELGLPVRPDVPLIGFIGRLDHQKGVDLIAEAVPWMMSQDVQLVMLGSGRPDLEEVLRQMEHQYRDKARGWVGFSVKTAHRITAGADILLMPSRFEPCGLNQLYAMNYGTIPVVHAVGGLRDTVQQFDPYSETGLGWTFDSAEAGKLIHALGNCLLTYREYKESWEGLQRRGMTQDLSWDNAAEKYEEVLVAAKYHW", "cigar": "432D2M93D3M164D2M466DM151D3M130DM150D19M91D10MD3M12D3M76D5M21D6M9D3MD3M14D4M3D4M6D5M166D2M127D5M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD5M36D3M45D7M3DM2D6M4D2M3D6M47D8M2D9M2D12M20D7M6D3M45D2MD2M70D4M2DM11D7M20D28M5D4M3D6MDM5D8MD2M19D11M16D5M13D4M23D5M16D10MD2M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 81972, "taxon_name": "Arabidopsis lyrata subsp. lyrata", "assembly": "v.1.0", "representative": { "id": "fgenesh2_kg.3__112__AT3G01180.1", "score": -50 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 306, "end": 548, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 609, "end": 748, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 105, 321, 342, 368, 405, 420, 478 ] } ], "representative": { "id": "AT3G01180", "score": -174.984528 } }, { "node_id": 4737429, "distance_to_parent": 0, "left_index": 449, "right_index": 482, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "duplication", "bootstrap": 0, "duplication_confidence_score": 1, "children": [ { "node_id": 4737430, "distance_to_parent": 0.055951, "left_index": 468, "right_index": 481, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "speciation", "bootstrap": 3, "children": [ { "node_id": 425761, "distance_to_parent": 0.180064, "left_index": 479, "right_index": 480, "protein_stable_id": "Bo1g157700.1", "gene_stable_id": "Bo1g157700", "sequence": "MVVVPRYAEYEEAKDVGVRKRYKVTGQDILKRMVLFCKAAVEFWTGFCVQVPWYVPCGGVCYGDGNLDFIANDWHTALLPVYLKAYYRDHGLMKYTRSVLVIHNIASPASSYMTLWEESTSTSSRSVSKLRRVLTVSHGYSWEVKTLEGGWGLHSIINEK", "cigar": "4605D9M8D8M39D2M2D6MDM33DM77D21M4D4M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM25DM56D2M11D3MD4M37D13M6D16MD5M6D9M2984D", "taxon_id": 109376, "taxon_name": "Brassica oleracea var. oleracea", "assembly": "v2.1", "representative": { "id": "Bo1g157700", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 23, "end": 158, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 1, 27, 42, 109 ] }, { "node_id": 4737434, "distance_to_parent": 0, "left_index": 469, "right_index": 478, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "duplication", "bootstrap": 7, "duplication_confidence_score": 0.5, "children": [ { "node_id": 425962, "distance_to_parent": 0.053345, "left_index": 476, "right_index": 477, "protein_stable_id": "CDY55806", "gene_stable_id": "GSBRNA2T00017362001", "gene_display_label": "BnaCnng29150D", "sequence": "MASSVTESSFPILCQIKSQPRVTWRSVVRVSFPDFASGSLSFRRRSFVVGQRWKFVSCVGSDSSGAASGGDDEQQEDALQATIDKSKKVLDMQRNLLHQIAERRKLVSSIKDTTPNLDHGKPSANEDYGSSSSSVSANTDAIKKEENGNGSASSSSYGKSSLNKVPEANKTSPLLERSKLSSASSPATSPEKEKPSGVASRGKPWSSVTEEYMETKEEKTHEEEASSDTVRDEEKPPPLAGANVMNVILVAAECAPFSKTTPLVILFDCGLGDVAGALPKALARRGHRVMVVVPRYAEYEEAKDVGVRKRYKVAGQDMEVMYFHAYIDGVDFVFIDSPVLRHLSNNIYGGNRLDILKRMVLFCKAAVEVPWYVPCGGVCYGDGNLAFIANDWHTALLPVYLKAYYRDHGLMKYTRSVLVIHNIAHQGRGPVDDFSYVDLPGHYLDSFKLYDPVGGEHFNIFAAGLKAADRVLTVSHGYSWEVRAVRFKPALRDEVWNRSAGKLIHALGNCVLTYREYKESWEGLQRRGMIQDLSWDNAAEKYEEVLVAAKYHW", "cigar": "431D3M93D3M164D2M466DM151D3M130DM150D8MD6M96D9MD3M12D3M76D5M21D6M9D3MD3M17DM3D4M6D5M166D4M125D5M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD5M36D3M45D11M2D6M4D2M3D5M50D6M2D9M2D12M23D4M6D3M45D2MD2M68D9M11D7M20D8M103D4M13D4M23D5M15D8M4D2M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6D5M23DM42DM7D11M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MDM543DM11D3M71D3M4D3M41DM10D3M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 3708, "taxon_name": "Brassica napus", "assembly": "AST_PRJEB5043_v1", "representative": { "id": "GSBRNA2T00017362001", "score": -50 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 246, "end": 486, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 99, 208, 269, 290, 316, 353, 368, 426, 481, 500 ] }, { "node_id": 4737438, "distance_to_parent": 0.110791, "left_index": 470, "right_index": 475, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "speciation", "bootstrap": 89, "children": [ { "node_id": 425798, "distance_to_parent": 0.00635, "left_index": 473, "right_index": 474, "protein_stable_id": "CDY34693", "gene_stable_id": "GSBRNA2T00057206001", "gene_display_label": "BnaA01g33320D", "sequence": "LSPSLILMVCFFFFKTLKNYIWDALNCSLPLVFKILSLHLILLLFQRKLVSSIKDTTPNLDHAKPSAKEDYGSSSSVSAIKKEENGNASVSPSNYGKSFLNKLPEANKTSPLERSKQSSASVQSSSPSGVASSGKPWSSVVVASSVDPPYKPSSKQTSDPVTLVLVHPLSSYLTKTPSIKTEEYMETKEEKTHEEEASSDTNEPVRDEEKPSPLAEANVMNVILVAAECAPFSKTGGLGDVAGALPKALARLGHRVMVVVPRYAEYEEAKDVGVRKRYEVAGQDMEVMYFHGVDFVFIDSPVFRHLSNNIYGGNRLGRGPVHDFSYVDLPGHYLDSFKLVHTVSHGYSWEVKTLEGGWGLHNIISENDWKFRGIVKSFKIHRTSIEEFSINFSTNIKI", "cigar": "1161D2M279D7M210D4M68D7M8D2M447D2M454D10M66D4M255D2M27D3M10D4M60DM22D9MD5M36D3M45D12MD3M63D10M2D9M2D6M39D4M18DM11D5M7D4MD3M84D10M20D10M32D2M10D7MD3M42D4M2D7M4D2MD9M5D2M10D8M12D16M5D4M64D3M9D6M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D3M7D13M7D2M5D10M247D15M11D3MD5M57D14MD5M6D10M7D12M34D3M6D4M25D2M78D3M155DM12D3M26DM2DM2608D", "taxon_id": 3708, "taxon_name": "Brassica napus", "assembly": "AST_PRJEB5043_v1", "representative": { "id": "GSBRNA2T00057206001", "score": -50 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 221, "end": 317, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 21, 167, 236, 257, 283, 316, 339 ] }, { "node_id": 425708, "distance_to_parent": 0, "left_index": 471, "right_index": 472, "protein_stable_id": "Bra021487.1-P", "gene_stable_id": "Bra021487", "gene_description": "AT3G01180 (E=1e-058) AtSS2 | AtSS2 (starch synthase 2); transferase, transferring glycosyl groups ", "sequence": "MKRKLVSSIKDTTPNLDHAKPSAKEDYGSSSSVSAIKKEENGNASVSPSNYGKSFLNKLPEANKTSPLERSKQSSASVQSSSPSGVASSGKPWSSVVASSVDPPYKPSSKQTSCDNPPHPLSSYLTKTPSIKTEEYMETKEEKTHEEEASSDTNEPVRDEEKPSPLAEANVMNVILVAAECAPFSKTGGLGDVAGALPKALARLGHRVMVVVPRYAEYEEAKDVGVRKRYEVAGQDMEVMYFHGVDFVFIDSPVFRHLSNNIYGGNRLGRGPVHDFSYVDLPGHYLDSFKLYDPVGREHFNIFAAGLKAADRVHTVSHGYSWEVKTLEGGWGLHNIISENDWKFRGIVKSFKIYRTSIEEFSINFSTNIKI", "cigar": "3029D3M60DM22D9MD5M36D3M45D12MD3M63D10M2D9M2D6M39D4M18DM11D5M7D4MD3M84D10M20D7MD2M32D2M10D7MD3M42D8M9D2MD9M5D2M10D8M12D16M5D4M64D3M9D6M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D3M7D13M7D2M5D10M247D15M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D12M34D3M6D4M25D2M78D3M155DM12D3M26DM2DM2608D", "taxon_id": 51351, "taxon_name": "Brassica rapa subsp. pekinensis", "assembly": "IVFCAASv1", "representative": { "id": "Bra021487", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 173, "end": 266, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 2, 119, 188, 209, 235, 268 ] } ], "representative": { "id": "Bra021487", "score": -100 } } ], "representative": { "id": "Bra021487", "score": -99.889209 } } ], "representative": { "id": "Bra021487", "score": -99.889209 } }, { "node_id": 4737444, "distance_to_parent": 0.023909, "left_index": 450, "right_index": 467, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "speciation", "bootstrap": 1, "children": [ { "node_id": 425897, "distance_to_parent": 0.000881, "left_index": 465, "right_index": 466, "protein_stable_id": "Bra039138.1-P", "gene_stable_id": "Bra039138", "gene_description": "AT3G01180 (E=1e-205) AtSS2 | AtSS2 (starch synthase 2); transferase, transferring glycosyl groups ", "sequence": "MASVAESSYPLLCQIKSQRRVTSSTLRNSSLVRVSPPHFASGSLSFRRRSFVLGHRWKFARCVEATGPDSSGSPSGDDEQEDALQATIDKSKKVLDMQRNLLHQIAERRKLVSSIKESTPNLVDGKPSAKEDANTADAAKNDKMDGDGNGSVSSSSYVKSSLNKEPEATTPLKSSKQSSPSAKSPEKEKPSGVANNGKPWSSVVASSVDPPYKPSSTVTSSKKTSDPVTSSVNPSKSPAGAFWSDPLPSYLTKTPETPSIKTEEYMETKEEMAHEEASSDTDEPSKDEEQPPPLAGANVMNVILVAAECAPFSKTGGLGDVAGALPKALARRGHRVMVVVPRYAEYEEAKDVGVRKRYKVAGQDMEVMYFHAYIDGVDFVFIDSPVFRHLSSNIYGGNRLDILKRMVLFCKAAVEVPWYVPCGGVCYGDGNLAFIANDWHTALLPVYLKAYYRDHGLMKYTRSVLVIHNIAHQGRGPVDDFSYVDLPGHYLDSFKLYDPVGGEHFNIFAAGLKAADRVLTVSHGYSWEFRGIVNGIDTKEWNPKFDLHLHSDDYTNYSLETLQIGKPQCKAALQKELGLPVRPDVPLIGFIGRLDHQKGVDLIAEAVPWMMSQDVQLVMLGTGRPDLEEVLRQMEHQYRDKARGWVGFSVKTAHRITAGADILLMPSRFEPCGLNQLYAMNYGTIPVVHAVGGLRDTVQQFDPYSETGLGWTFDSAEAGKLIHALGNCLLTYREYKESWEGLQRRGMTQDLSWDNAAEKYEEVLVAAKYQW", "cigar": "432D2M93D3M164D2M466DM151D3M130DM150D8MD10M91D10MD3M12D3M76D5M21D6M9D3MD3M14D4M3D4M6D5M166D2M127D5M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD5M36D3M45D5M11D4M3D2M3D6M47D8M2D9M2D7M26D6M6D3M45D2MD2M70D7M11D7M20D37M3D6MDM5D8MD2M19D11M16D5M13D4M23D5M16D10MD2M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D13M34D12MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 51351, "taxon_name": "Brassica rapa subsp. pekinensis", "assembly": "IVFCAASv1", "representative": { "id": "Bra039138", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 301, "end": 529, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 584, "end": 723, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 104, 316, 337, 363, 400, 415, 473, 528 ] }, { "node_id": 4737451, "distance_to_parent": 0, "left_index": 451, "right_index": 464, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "duplication", "bootstrap": 1, "duplication_confidence_score": 0.5, "children": [ { "node_id": 425685, "distance_to_parent": 0.001759, "left_index": 462, "right_index": 463, "protein_stable_id": "CDY37538", "gene_stable_id": "GSBRNA2T00064157001", "gene_display_label": "BnaA05g34030D", "sequence": "MASVAESSLPLLCQIKSQRRVTSSTLRNSSLVRVSPPHFASGSLSFRRRSFVLGHRWKFARCVEATGPDSSGSPSGDDEQEDALQATIDKSKKVLDMQRNLLHQIAERRKLVSSIKESTPNLVDGKPSAKEDANTADAAKNDKMDGDGNGNPLPSYLTKTPETPSIKTEEYMETKEEMAHEEASSDTDEPSKDEEQPPPLAGANVMNVILVAAECAPFSKTGGLGDVAGALPKALARRGHRVMVVVPRYAEYEEAKDVGVRKRYKVAGQDMEVMYFHAYIDGVDFVFIDSPVFRHLSSNIYGGHRLDILKRMVLFCKAAVEVPWYVPCGGVCYGDGNLAFIANDWHTALLPVYLKAYYRDHGLMKYTRSVLVIHNIAHQGRGPVDDFSYVDLPGHYLDSFKLYDPVGGEHFNIFAAGLKAADRVLTVSHGYSWEFRGIVNGIDTKEWNPKFDLHLHSDDYTNYSLETLQIGKPQCKAALQKELGLPVRPDVPLIGFIGRLDHQKGVDLIAEAVPWMMSQDVQLVMLGTGRPDLEEVLRQMEHQYRDKARGWVGFSVKTAHRITAGADILLMPSRFEPCGLNQLYAMNYGTIPVVHAVGGLRDTVQQFDPYSETGLGWTFDSAEAGKLIHALGNCLLTYREYKESWEGLQRRGMTQDLSWDNAAEKYEEVLVAAKYQW", "cigar": 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"description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 612, "end": 754, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 116, 326, 347, 373, 410, 425, 483 ] }, { "node_id": 4737369, "distance_to_parent": 0.023409, "left_index": 398, "right_index": 443, "taxon_id": 1437201, "taxon_name": "Pentapetalae", "node_type": "speciation", "bootstrap": 5, "children": [ { "node_id": 4737416, "distance_to_parent": 0.166658, "left_index": 437, "right_index": 442, "taxon_id": 4107, "taxon_name": "Solanum", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425919, "distance_to_parent": 0.008056, "left_index": 440, "right_index": 441, "protein_stable_id": "PGSC0003DMT400003356", "gene_stable_id": "PGSC0003DMG400001328", "gene_display_label": "SS2", "gene_description": "Granule-bound starch synthase 2, chloroplastic/amyloplastic", "sequence": "MENSILLHSGNQFHPNLPLLALRPKKLSLIHGSSREQMWRIKRVKATGENSGEAASADESNDALQVTIEKSKKVLAMQQDLLQQIAERRKVVSSIKSSLANAKGTYDGGSGSLSDVDIPDVDKDYNVTVPSTAATPITDVDKNTPPAISQDFVESKREIKRDLADERAPPLSRSSITASSQISSTVSSKRTLNVPPETPKSSQETLLDVNSRKSLVDVPGKKIQSYMPSLRKESSASHVEQRNENLEGSSAEANEETEDPVNIDEKPPPLAGTNVMNIILVASECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPRYDNYPEPQDSGVRKIYKVDGQDVEVTYFQAFIDGVDFVFIDSHMFRHIGNNIYGGNRVDILKRMVLFCKAAIEVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGIMNYTRSVLVIHNIAHQGRGPLEDFSYVDLPPHYMDPFKLYDPVGGEHFNIFAAGLKTADRVVTVSHGYSWELKTSQGGWGLHQIINENDWKLQGIVNGIDTKEWNPELDVHLQSDGYMNYSLDTLQTGKPQCKAALQKELGLPVRDDVPLIGFIGRLDPQKGVDLIAEAVPWMMGQDVQLVMLGTGRRDLEQMLRQFECQHNDKIRGWVGFSVKTSHRITAGADILLMPSRFEPCGLNQLYAMKYGTIPVVHAVGGLRDTVQPFDPFNESGLGWTFSRAEASQLIHALGNCLLTYREYKKSWEGIQTRCMTQDLSWDNAAQNYEEVLIAAKYQW", "cigar": "432D3M92D2M917D2M150D19M91D4M7D3M92D4M35D4MD3M14D4M3D3M7D5M166D4M127D3M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD4M91D6MD12M56D19M2D29MD9M6D3M45D2MD10M56D13MDM5D11M20D9M53D2M20D9M18D4M13D4M23D5M17D9MD2M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4113, "taxon_name": "Solanum tuberosum", "assembly": "SolTub_3.0", "representative": { "id": "PGSC0003DMG400001328", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 277, "end": 519, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": 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"MENSIVLHTGNQFHPSLPFFSFRPKKLSRIHGSSREQMWRIKRVKATGENSGEAASADESDDALQVTIEKSKKVLAMQQDLLQQIAERRKVVSSIKSSLADATGTYDGGSGSLSDVDIPDVDKDYNVTVPSTAATPITDVDKNTPPAISQDFVESKREVKRDLADERAPPLSRSSITASSQTSSTVSSKRILNVPPETPKFSQETLLNVNSRKSLVDVPGKKIQSYMPSLCKESSAQSLVEKRNENLEGSSAEANEETEDLVNIDEKPPPLAGTNVMNIILVASECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPRYDNYPEPQDSGVRKIYKVHGQDVEVTYFQAFIDGVDFVFIDSHMFRHIGNNIYGGNRVDILKRMVLFCKAAIEVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGIMNYTRSVLVIHNIAHQGRGPLEDFSYVDLPPHYMDPFKLYDPVGGEHFNIFAAGLKTADRVVTVSHGYSWELKTSEGGWGLHQIINENDWKLRGIVNGIDTKEWNPELDVHLQSDGYVNYSLDTLQTGKPQCKAALQKELGLPVRDDVPLIGFIGRLDPQKGVDLIAEAVPWMMGQDVQLVMLGTGRPDLEQMLRQFECQHNDKIRGWVGFSVKTSHRITAGADILLMPSRFEPCGLNQLYAMTYGTIPVVHAVGGLRDTVQPFDPFNESGLGWTFSRAEANQLIHALGNCLLTYREYKKSWEGIQTRCMTQDLSWDNAAQNYEEVLIAAKYQW", "cigar": "432D3M92D2M917D2M150D19M91D4M7D3M92D4M35D4MD3M14D4M3D3M7D5M166D4M127D3M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD4M91D6MD12M56D19M2D29MD9M6D3M45D2MD10M56D13MDM5D11M20D9M53D2M20D10M17D4M13D4M23D5M17D9MD2M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4081, "taxon_name": "Solanum lycopersicum", "assembly": "SL2.50", "representative": { "id": "Solyc02g088000.2", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 278, "end": 520, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 579, "end": 721, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 84, 293, 314, 340, 377, 392, 450 ] } ], "representative": { "id": "PGSC0003DMG400001328", "score": -149.991944 } }, { "node_id": 4737370, "distance_to_parent": 0.008813, "left_index": 399, "right_index": 436, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 425942, "distance_to_parent": 0.112139, "left_index": 434, "right_index": 435, "protein_stable_id": "VIT_14s0108g00940.t01", "gene_stable_id": "VIT_14s0108g00940", "gene_display_label": "AtSS2", "gene_description": "Putative uncharacterized protein", "sequence": "MASVGCVSFVTERAASIWSGRDRRPRFSFPVYRLRMSPGCAISKDSIFGYSREDCVRFSLCSRRQVLGSRGVRARGEGSVEGEDGDRLEDAFDATIEKSKKVLAMQRDLLQQNGHEDPKVGVEQDFDVGAASVSVTFNISIAERRKLVSSIKSSIINPEDNEVSYKGRDSSFPNMDLTSTGDSGGDEDYNGGILSGNYVHSNADKVPAALSSATSRGFGEGEKELGKDLSLENPSLDLEAPKQLKDTSPKTVWSDPLPSFLSKSVETASPKEEKQEDFRELSSEEVNNEAAVSMGEDVKPPPLAGTNVMNIILVAAECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPRYGNYAEAQETGVRKKYKVDGQDMEVTYFQAYIDGVDFVFIDSHMFRHIEKNIYGGNRMDILKRMVLFCKAAIEVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSALVIHNIAHQGRGPVEDFSYTGLPEHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSHGYAWELKTSEGGWGLHQIINENDWKLRGIVNGIDVKDWNPELDIYLESDGYVNYSLETLHTGKPQCKAALQKELGLPIREDVPLIGFIGRLDHQKGVDLIAEAVPWMVGQDVQLVMLGTGRNDLEQMLRQFESQHHDKIRGWVGFSVKMAHRITAGADILLMPSRFEPCGLNQLYAMNYGTIPVVHAVGGLRDTVQPFDPYNESGLGWTFDRAEANRLIHALGNCLLTYRQYKQSWEGLQRRGMMQDLSWDHAAQNYEEVLVAAKYQW", "cigar": "432D2M93D3M164D2M466DM151D5M35D2M90D2M150D27M47D7M40D3M10DMD3M20D2M54D5M35D4MD3M14D4M3D4M7D4M166D4M127D3M454D10M66D4M12DMDM221DMD3M14D30M12D4M60DM22D9MD4M37D3M45D5M3D3M4D2M3D5M3D7M45D9M2D9M2D22M8D8M56DMD4M68D7M11D7M75D6MD2M19D11M17D4M13D4M23D5M16D10MD2M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 29760, "taxon_name": "Vitis vinifera", "assembly": "IGGP_12x", "representative": { "id": "VIT_14s0108g00940", "score": -50 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 310, "end": 552, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 609, "end": 753, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 112, 140, 325, 346, 372, 409, 424, 482 ] }, { "node_id": 4737371, "distance_to_parent": 0.02552, "left_index": 400, "right_index": 433, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4737411, "distance_to_parent": 0.110487, "left_index": 427, "right_index": 432, "taxon_id": 3641, "taxon_name": "Theobroma cacao", "node_type": "duplication", "bootstrap": 57, "duplication_confidence_score": 1, "children": [ { "node_id": 425742, "distance_to_parent": 0.195169, "left_index": 430, "right_index": 431, "protein_stable_id": "EOY03478", "gene_stable_id": "TCM_018567", "gene_description": "Starch synthase 2, putative", "sequence": "MFPEQLLETIAKTDSVITGKSWFFQVPWHVPCKGACYGDGNLVFIANDWHTALLPMYLKAYYRDNGLMSFTRSVLVIHKIAHQGKGLVEDFYHVDFLEHYMDLFKLYEPVEGDHFNIFTARLKTTDIVVTVSHGIILVVHAINGMKDIVQPFKAFEKSKLGGTFDSADANKLIHALGNCLLTYHK", "cigar": "432D2M728DM230DM1592DM128D8M289D3M993D2M6DM138DM2DM28DM139D3M89D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D9M596DM33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D3M2167D", "taxon_id": 3641, "taxon_name": "Theobroma cacao", "assembly": "Theobroma_cacao_20110822", "representative": { "id": "TCM_018567", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 43, "end": 134, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 15, 83, 134 ] }, { "node_id": 425807, "distance_to_parent": 0.008913, "left_index": 428, "right_index": 429, "protein_stable_id": "EOY03481", "gene_stable_id": "TCM_018569", "gene_description": "Starch synthase 2", "sequence": "MAYIASSSSPFIIESKRENRPVFPFSTFRPRKSKSLAVLNVSTCGFSLFSNKGLLWRFKPVRVAGSLDGVGGGGDDSEDTFQATIEKSKKVLAMQRDLLQQIAERRKLVSSIKSSITDQDEDEVFHEQRDDYLPKVDLASSSSDGMDENKNGSILLSSHVNLTMKDVPEIPPSDEVGQEPEQHLAPEKASSNIGPSKQLKTTDHKPLKSDVLPSYLSSSSDTARLAVEENENLTEAGLEEVGEVDGPAIEDEKPPPLAGANVMNVILVAAECAPWSKTGGLGDVAGSLPKALARRGHRVMVVAPRYADYAEPQDTGVRKRYKVDGQDVEVSYFQAYIDGVDFVFMDSPMFRHMQKNIYGGNRMDILKRMVLFCKAAVEVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMSFTRSVLVIHNIAHQGRGPVEDFSYVDLPEHYMDLFKLYDPVGGDHFNIFAAGLKTADRVVTVSHGYAWELKTSEGGWGLHGIINESDWKLRGIVNGIDTKDWNPQYDVHLKSDGYTNYSLETLQTGKAQCKAALQKELGLPGREDVPLIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLVMLGTGQPDLEEMLRQFENQHRDKVRGWVGFSVKTAHRITAGADILLMPSRFEPCGLNQLYAMNYGTIPVVHAVGGLRDTVQPFKPYEESGLGWTFGSADANKLIHALGNCLLTYREYKKSWEGLQRRAMMQDLSWDNAAEKYEEVLVAAKYQW", "cigar": "432D4M91D3M164D2M466DM151D5M35DM246D24M47D7M40D3M92D4M35D4MD3M14D4M3D3M7D5M166D4M127D3M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD4M37D3M45D5M3D3M7D7M3D7M45D9M2D9M2D11M5D4M11D8M7D2M45D2MD3M70D6M11D7M75D6MD2M19D11M17D4M13D4M23D5M16D4MD5MD2M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 3641, "taxon_name": "Theobroma cacao", "assembly": "Theobroma_cacao_20110822", "representative": { "id": "TCM_018569", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 264, "end": 506, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 566, "end": 708, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 101, 279, 300, 326, 363, 378, 436 ] } ], "representative": { "id": "TCM_018569", "score": -99.991087 } }, { "node_id": 4737372, "distance_to_parent": 0, "left_index": 401, "right_index": 426, "taxon_id": 91835, "taxon_name": "fabids", "node_type": "speciation", "bootstrap": 1, "children": [ { "node_id": 4737379, "distance_to_parent": 0.066295, "left_index": 408, "right_index": 425, "taxon_id": 3814, "taxon_name": "Papilionoideae", "node_type": "duplication", "bootstrap": 75, "duplication_confidence_score": 0.3333, "children": [ { "node_id": 425929, "distance_to_parent": 0.234461, "left_index": 423, "right_index": 424, "protein_stable_id": "GLYMA18G49480.1", "gene_stable_id": "GLYMA18G49480", "gene_description": "Uncharacterized protein", "sequence": "MWDWSSKSQQEPVMIADNHEEDDERLSDPTPDEPESSKRPRRNPQLPARLQDCVMFNDNNPSDEEIINFALFAGYGPITFEEALSYKNWRKAMDDEIHAIGELNVKLPQNEDKRTKTKESSYRDGNVPWHVPCGGVCYGDGNLAFIENDWHTALLPVYLKAYYRDQGLMQYARSVLVIHNIAHQGRGPVDDFFFVDLPEHHKDLFKFHIGGDHFNIFAAGLKTADRVVTVSHGYAWELKTSEGGWGLHGIINENDWKLGHYGYTNYSLETLSSGKAKCKAALQKELGLPIHEDVPKGIDLIAKAIPWLMSQDVQLKTCLGNFKSNTMTRITAGADILLMPSRFEPCGLNQLYAMNYGTVPVVHAVGGLRDTVQPFDPFNESGLGWTFDRNCLWTYRERGMTQDLSWDNAAQQYEEVLLAAKYQW", "cigar": "432D3M255DM3D3M465DM218DM11DM6DM41D3M382DM235D5M918D2M40D4M60D2M140D7M120D4M30D2M12D2MD3M176D3M63D5M54D2M5D4M64D2M471D2M3DM54D8M165D6M23D11M5D6M6D2M2DM5D3M37D7M57D3M2D6MDM48D5M3DM49DM31D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD6M29D3M3D13M6D16MD5M6D10M7D2M21D3M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D6M17D2M132D13M12D3M26DM2DM7D3M17DM30D2M49D3M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D2M59DM15DM28D3M34D3M88D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 3847, "taxon_name": "Glycine max", "assembly": "V1.0", "representative": { "id": "GLYMA18G49480", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 148, "end": 253, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 329, "end": 383, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 104, 126, 184, 261, 295, 315, 329, 389, 397 ] }, { "node_id": 4737380, "distance_to_parent": 0.025312, "left_index": 409, "right_index": 422, "taxon_id": 3814, "taxon_name": "Papilionoideae", "node_type": "speciation", "bootstrap": 93, "children": [ { "node_id": 4737400, "distance_to_parent": 0.085803, "left_index": 416, "right_index": 421, "taxon_id": 163742, "taxon_name": "Trifolieae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425745, "distance_to_parent": 0.039216, "left_index": 419, "right_index": 420, "protein_stable_id": "AES74718", "gene_stable_id": "MTR_6g012380", "gene_description": "granule bound starch synthase", "sequence": "MLSLGSDTTVLLFHTKNLKFTPKINTLNADSGFSRSRGRLNYGSVGLKYKHIRAVGKSIGNDENEDEDEDDVLNATIEKSKKVLALQKELIQQIAERKKLVSSIDSDSIPGLEGNGISYESSEKSASSDSNPQKGSTRSGSGSAVENQNGGTVLRSSVHSREKETQDVSSAGINQDFVEQKKRNDAEMASSRQRFDEQFKNKRYEGKKSIRPDTVPKDLSSNIKTYSQKFENLKRESESSSKEVTNEPENIESEGENPPPLAGPNVMNIILVAAECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEAQDIGVRKRYKVAGQDMEVTYFQTYIDGVDFVFIDSPIFQHLESNIYGGNRVDILRRMALFCKAAVEVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDHGLMNYTRSVLVIHNIAHQGRGPLDDFNIVDLPGNYIDLFRMYDPVGGEHFNIFAAGLKTADRIVTVSHGYAWELKTSEGGWGLNGIINENDWKFRGIVNGVDTKDWNPQFDVHLKSEGYTNYTLETLQTGKRQCKAALQKELGLPVREDVPIIAFIGRLDQQKGVDLIGEAIPWMMSHDVQLIMLGTGRPDLEEMLRQFEWQHHDKIRGWVGFSVKMAHRITAGADILLMPSRFEPCGLNQLYAMNYGTVPVVHAVGGLRDTVQPFNPFDESGVGWTFDRAEANKLKAALWNCILTYRDYKKSWEGIQRRGMSQDLSWDNAAEQYEEVLVAAKYQW", "cigar": "432D2M93D3M164D2M466DM149D5M36D4MD2M19D2M61D6M137D5M8D3M2D7M110D2M10D5M121D3M14D4M3D3M7D5M166D4M126D4M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD5M36D3M45D5M4D3MD12M3D6M45D10M2D9M2D12M21D6M6D4M42D11M74DM5D11M20D3M52D6MD2M19D11M13D8M40D5M16D10MD2M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 3880, "taxon_name": "Medicago truncatula", "assembly": "MedtrA17_4.0", "representative": { "id": "MTR_6g012380", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 268, "end": 510, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 568, "end": 711, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 93, 283, 304, 330, 367, 382, 440 ] }, { "node_id": 425796, "distance_to_parent": 0.038871, "left_index": 417, "right_index": 418, "protein_stable_id": "Tp57577_TGAC_v2_mRNA9112", "gene_stable_id": "Tp57577_TGAC_v2_gene8813", "sequence": "MMLSLGSDTTVLLFHTKNLKFTPKINTLNVDSAFSRGLSGGRLNYGSVRLKHKQLGAVGKSFGTDENEDEEKSDDDVVNATIEKSKKVLALQRELIQQIAERKKLVSSIDSDNVPGLEGNGISYESSEESLSSGSNTQESSSTSASRNAVENQNGGNVLRNNAYSKEKETRDDSSVGINQGFDERKKRNDAERSSSWLHFNEQRKNLVSSIQTSSLKFENLQRESESNSKEVSNEPDNVESDGENPPPLAGANVMNIILVAAECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGDYAETQDIGVRKRYKVAGQDMEVTYFQAYIDGVDFVFIDSPIFRHLESNIYGGNRVDILRRMALFCKAAVEVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMNYTRSVLVIHNIAHQGRGPLEDFNYVDLPGNYVDLFKMYDPVGGEHFNIFAAGLKTADRIVTVSHGYAWELKTTEGGWDGYTNYTLATLQTGKRQCKAALQKELGLPVREDVPIISFIGRLDQQKGVDLIAEAIPWMMSHDVQLIMLGTGRPDLEQMLRQFECQHHDKIRGWVGFSVKMAHRITAGADILLMPSRFEPCGLNQLYAMNYGTVPVVHAVGGLRDTVQPFNPFDESGVGWTFDRAEANKLMAALWNCISTYREYKKSWEGIQQRGMSQDLSWDNAAQQYEEVLVAAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD2M19D2M61D6M137D5M8D12M110D2M10D5M121D3M14D4M3D3M7D5M166D4M124D6M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD5M36D3M45D5M4D3MD12M3D6M45D10M2D9M2D12M21D6M6D4M42D8M37D3M37DM5D5M109D11M13D8M40D5M16D10MD2M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M66D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 57577, "taxon_name": "Trifolium pratense", "assembly": "Trpr", "representative": { "id": "Tp57577_TGAC_v2_gene8813", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 256, "end": 491, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 522, "end": 664, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 98, 271, 292, 318, 355, 370, 428, 492 ] } ], "representative": { "id": "MTR_6g012380", "score": -99.960784 } }, { "node_id": 4737396, "distance_to_parent": 0.058892, "left_index": 410, "right_index": 415, "taxon_id": 3847, "taxon_name": "Glycine max", "node_type": "duplication", "bootstrap": 100, "duplication_confidence_score": 1, "children": [ { "node_id": 426031, "distance_to_parent": 0.02458, "left_index": 413, "right_index": 414, "protein_stable_id": "GLYMA19G02690.1", "gene_stable_id": "GLYMA19G02690", "gene_description": "Starch synthase IIa-2; Uncharacterized protein", "sequence": "MASMGSLPFLVEANADSTVMMMMLHNRNHKFSSSKFSTLNASSLVRGWGRGRVKHRCSRGLLCLVEKNKHISALGKSSGTSEDKDDSDEVLQATIEKSKKVLALQRELLQQISERKKLVSSINSETTPEIGDSISYEHSDKSLSSDSNPQKGSARRGSAFENENGGVVSSNYVESIEKEIPDVSFVGIDLGLDKSEEEDDNLSPVEKASPRLYVDEQLNSKRYEIIKPDTLPSDIPCSTETFSRKIEILEALSESSTKEVANEADNVEGEGEKPPPLAGANVMNVILVAAECAPFVKTGGLGDVVGSLPKALARRGHRVMVVVPRYSHYAEAQDLGVRKRYKVDGQDMEVTYFHSYIDGVDFVFIDSPNFRHLQDNIYRGSREDILKRMVLFCKAAAEVPWHVPCGGVCYGDGNLAFIANDWHTALLPVYLKAYYRDHGIMKYTRSVLVIHNIAHQGRGPVDDFRYTDLPEHYIDLFKLYDPVGGEHFNIFAAGLKAADRIVTVSHGYAWEIKTSEGGWGLHGIIYENDWKLRGIVNGIDTKDWNPKFDVHLKSDGYTNYTLETLQSGKRRCKAALQKELGFPVREDVPLLGFIGRLDQQKGIDLIAESIPWIVSQDVQLVMLGTGRPDLEDMLRQFESQHRDKVRGWVGFSVKMAHRITAGADILLMPSRFEPCGLNQLYAMNYGTIPVVHAVGGLRDTVKPFNPFEESGLGWTFDSAETNKLINAIGNCLLTFRQYKQSWEGLQRRGMTQDLSWDNAAQQYEEVLVAAKYQW", "cigar": "432D2M93D3M164D2M466DM151D5M35D3MD3M85D2M150D11M6D10M47D7M40D3M12D3M20D2M55D5M20D2M12D4MD3M14D4M3D3M7D5M166D4M127D3M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD4M37D3M45D5M3D3M2D12M3D6M47D8M2D9M2D20M11D8M6D3M45D2MD3M70D6M11D7M75D6MD2M19D11M17D4M13D4M23D5M16D10MD2M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 3847, "taxon_name": "Glycine max", "assembly": "V1.0", "representative": { "id": "GLYMA19G02690", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 284, "end": 525, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 111, 299, 320, 346, 383, 398, 456 ] }, { "node_id": 425676, "distance_to_parent": 0.014566, "left_index": 411, "right_index": 412, "protein_stable_id": "GLYMA13G05441.1", "gene_stable_id": "GLYMA13G05441", "gene_description": "Uncharacterized protein", "sequence": "MASMGSLPFLVEANADSTLMMMMLQNRNHKFSSPKFNTVNASSLVRGWGRGRVNHRCSSRGLLCLVEKNKHISALGKSSGTSEDKDESEEVLQATIEKSKKVLALQRELLQQISERRKLVSSINSESTPEIEGDSISYEHSDESLSSDSIPQKGSAKRGSAVENENGVLVSSNYVQSIEKEIPDVSFVGIDLGLDKGEEEDDNLSPVEKASPRLYFDEQLNSKRYETITPDTLTSEIPRSTETSNRKIEILEALSESSTKEVANEGDNVESKGENPPPLAGANVMNVILVAAECAPFVKTGGLGDVAGSLPKALARRGHRVMVVVPRYSHYADAQDIGVWKRYKVDGQDMEVTYFHSYIDGVDFVFIDSPNFRHLQDNIYGGNREDILKRMVLFCKAAAEVPWHVPCGGVCYGDGNLAFIANDWHTALLPVYLKAYYRDHGLMKYTRSVLVIHNIAHQGRGPIDDFRYTDLPEHYIDLFKLYDPVGGEHFNIFSAGLKAADRIVTVSHGYAWEIKTSEGGWGLHGIINENDWKLRGIVNGIDTKDWNPKIDVHLKSDGYTNYTLETLQSGKRQCKAALQKELGLPVREDVPLLGFIGRLDQQKGIDLIAEAIPWIVGQDVQLVMLGTGRPDLEDMLRQFESQHRDKVRGWVGFSVKMAHRITAGADILLMPSRFEPCGLNQLYAMNYGTIPVVHAVGGLRDTVKPFNPFEESGLGWTFDSAETNKLINALGNCLLTFRQYKQSWEGLQRRGMTQDLSWDNAAQQYEEVLVAAKYQW", "cigar": "432D2M93D3M164D2M466DM151D5M35D3MD3M85D2M150D11M6D10M47D7M40D3M12D3M20D2M54D6M20D2M12D4MD3M14D4M3D3M7D5M166D4M127D3M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD5M36D3M45D5M3D3M2D12M3D6M47D8M2D9M2D20M11D8M6D3M45D2MD3M70D6M11D7M75D6MD2M19D11M17D4M13D4M23D5M16D10MD2M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 3847, "taxon_name": "Glycine max", "assembly": "V1.0", "representative": { "id": "GLYMA13G05441", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 286, "end": 528, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 587, "end": 725, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 112, 301, 322, 348, 385, 400, 458 ] } ], "representative": { "id": "GLYMA13G05441", "score": 0.014566 } } ], "representative": { "id": "MTR_6g012380", "score": -99.874981 } } ], "representative": { "id": "MTR_6g012380", "score": -99.849669 } }, { "node_id": 4737376, "distance_to_parent": 0.013617, "left_index": 402, "right_index": 407, "taxon_id": 91835, "taxon_name": "fabids", "node_type": "speciation", "bootstrap": 54, "children": [ { "node_id": 426015, "distance_to_parent": 0.112612, "left_index": 405, "right_index": 406, "protein_stable_id": "EMJ16167", "gene_stable_id": "PRUPE_ppa001734mg", "gene_display_label": "AtSS2", "gene_description": "starch synthase 2", "sequence": "MASIGSLPFMIETKTESSVLLHSNNNRRLRFPFFTHRPGRSIEVTGINAEVVGMCSRQINWCTKGKLWKIEPLRATGKVSVEGEDGGEPEDALRATIEKSKKVLAMQRDLLQQIAERRKLVSSIQSSSINQEEDKASFEQGNDSFPNVESSSTSGDNTVEDQIGSIASSSYGDSTEDKELETVPSAVSRGLNKIEKDHGEPLPLNKAPSEVESTKHVNKISSKTEWSDALPSFISTTAETSTPIDEELVDLKEPSLEEVNNWETDLMSEDVKPPPLAGANVMNVILVAAECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPLYGDYAEPQYSGIRKIYKVDGQDLEVAYFHAFIDGVDFVFIECPMFRHMGHNIYGGKREDILKRMVLFCKAAVEVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMTYTRSILVIHNIAHQGRGPVADFSFVDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSHGYAWEVKTVEGGWGLHGIINENDWKFKGIVNGIDTQEWNPQLDVYLTSDGYTNYSLVTLQTGKPQCKAALQKELGLPIREDVPVIGFIGRLDQQKGVDLIAEAIPWMMGQDVQLIMLGSGRPDLEQMLKEFEHQHRDKVRGWVGFSVQTAHRITAGADILLMPSRFEPCGLNQLYAMNYGTIPVVHAVGGLRDTVQPFNPYDESGLGWTFDSAEAGKLIHALGNCLLTYREYKKSWEGIQRRGMKQDLSWDHAAQNYEEVLVAAKYQW", "cigar": "432D2M93D3M164D2M466DM151D5M35D3MD3M54D7M181D22M47D7M36DM4D2M12D3M75D2MD3M35D4MD3M14D4M3D3M7D5M166D4M127D3M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD4M37D3M45D5MDMD3M8D6M3D7M45D9M2D9M2D21M10D8M7D2M45D2MD3M70D6M10D8M76D5MD2M19D11M17D4M13D4M23D5M16D10MD2M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 3760, "taxon_name": "Prunus persica", "assembly": "Prupe1_0", "representative": { "id": "PRUPE_ppa001734mg", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 283, "end": 525, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 582, "end": 726, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 113, 298, 319, 345, 382, 397, 455 ] }, { "node_id": 425702, "distance_to_parent": 0.102262, "left_index": 403, "right_index": 404, "protein_stable_id": "POPTR_0017s12040.1", "gene_stable_id": "POPTR_0017s12040", "gene_display_label": "POPTRDRAFT_1105268", "gene_description": "starch synthase 2", "sequence": "MSSIGSLPFIIETTKAESPVLLSRKNKNRDKFSFFTCRTKKSHNLAVLNYGFSPKSKPVRATVEEGASGDESEDALQASIEKSKKVLAMQRDLLQQIAERRKIVSSIKSSIIDSEVDEDHTSSSGQGVHEKQNGSILWKNYIHSTADEVPETSTLDISKGYDDDKRELEQQLPPKKASSHEDSSEQLKVTGSEKVWSDKLPSFLSNTSEISTTNEKQENVNEPILPEINNIENDPATEDILPPPLAGANVMNVIMVAAECAPWSKTGGLGDVAGSLPKALARRGHRVMVVAPRYGNYAEPHDIGVRKRYKVDGQDIEVTFFQTYIDGVDFVFIDSHVFCHIEGNIYGGSRLDILKRMALFCKAAVEVPWHVPCGGICYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMKFTRSILVIHNIAHQGRGPVDDFFHVDLPEYYIDLFKLHDPVGGEHFNIFAAGLKAADRVVTVSHGYSWELKTSEGGWGLHNIIKENDWKFSGIVNGIDTKEWNPLFDVHLTSDGYTNYSLETLHTGKPQCKAALQKELGLPVRPDVPMIGFIGRLDQQKGVDLIAEAVPWMVGQDVQLVMLGTGRQDLEQMLRQFENQHHDKIRGWVGFSVKMAHRITAGSDVLLMPSRFEPCGLNQLYAMMYGTIPVVHAVGGLRDTVQPFDPFNESGLGWTFDGAEANKLIHALGNCLFTYREYKKSWEGLQRRGMTQDLSWDHAAEKYEEVLVAAKYQW", "cigar": "432D2M93D3M164D2M466DM151D5M34D4MD3M85D2M150D27M50D3M175D4MD3M14D3M13D6M166D4M127D3M454D10M66D4M12DMDM221DMD3M14DM28DM12D4M60DM22D9MD4M93D3M12D2M3D7M45D9M2D9M2D21M10D8M7D2M45D2MD3M70D6M11D7M75D6MD2M19D7MD3M17D4M13D4M23D5M16D10MD2M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 3694, "taxon_name": "Populus trichocarpa", "assembly": "JGI2.0", "representative": { "id": "POPTR_0017s12040", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 252, "end": 495, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { 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"432D3M92D4M163D2M466DM149D5M36D4MD6M78DM160D5M8D2M54DMDM2D2M10DM30D2M9D6M10D2M5D4MDM51DM3D4M40D2M14D4M3D3M7D3M25D5MDM136D3M126D5M454D10M345DM8DM12D4M60D2M22D7M43D2M46D5MD6MD3M66D7M2D7M4D27M6D6M6D3M29D13M3D2MD2M64D13M9D8M21D8M47DMD4MD2M20D9M14D8M13D3M24D5M16D3MD9M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4558, "taxon_name": "Sorghum bicolor", "assembly": "Sorghum_bicolor_v2", "representative": { "id": "SORBI_010G093400", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 280, "end": 522, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 582, "end": 730, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 95, 295, 316, 342, 379, 394, 452 ] } ], "representative": { "id": "SORBI_010G093400", "score": 0.020828 } } ], "representative": { "id": "Si005900m.g", "score": 0.04608 } }, { "node_id": 4737581, "distance_to_parent": 0.005287, "left_index": 307, "right_index": 380, "taxon_id": 359160, "taxon_name": "BEP clade", "node_type": "speciation", "bootstrap": 35, "children": [ { "node_id": 4737613, "distance_to_parent": 0.05179, "left_index": 334, "right_index": 379, "taxon_id": 147380, "taxon_name": "Oryzeae", "node_type": "speciation", "bootstrap": 98, "children": [ { "node_id": 425980, "distance_to_parent": 0.052161, "left_index": 377, "right_index": 378, "protein_stable_id": "LPERR06G07610.1", "gene_stable_id": "LPERR06G07610", "sequence": "MSSAVVASSTTFLVALASVPRRERVPTPLALRGGAVGKLALRWAPRRRRDAAVARADGGENEEVERGDEEEEEEIAAGGAWQPPRSRRSGGIGKVAKRRGSVPPVGRYGSGGDGTRGRAVAAPAPTQDAVSFSQNGSLVSGDGKPVSPISQNGSLVGGDNKPASTAAAAAPSVTMRKISDVFLPSVDETPEIAVGDTTASVPRPDLADNPELRTDKNAKFVESAPKPEAPRSSLIPAVQEEAWDFNKFIDFDEWIAQQDRDDSWVDVDAADSSENHQDVDSGPLAGENVMNVIVVAAECGLGDVAGALPKALARRGHRVMVVVPRYGDYAEAQDIGIRKYYKAAGQDLEVKYFHAFIDGVDFVFIDAPLFRHRQDDIYGGSRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFIANDWHTALLPVYLKAYYRDHGTMQYTRSVLVIHNIAHQGRGPVDEFPYMDLPEHYLEHFKLYDPVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTEGGWGLHDIIRQNDWKMNGIVNGIDYREWNPEVDVHLQSDGYTNYNLDSLDTGKRQCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWITGQDVQLVMLGSGRRDLEVMLQRLEAQHKGKVRGWVGFSVRMAHRITAGADVLAMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVSAFDPFAGSGLGWTFDRAESHKLIEALGHCLDTYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4M84D2M160D5M64D7M40D3M9D6M9D2M6D5M56D4M40D2M14D4M13D6M25D2M138D5MD3M119D6M454D10M342D4M8DM12D4M60D2M22D7M43D3M48D2MD6MD3M2D7M3D11M15D5M20D10M2D23M4D11M6D7M53D2MD2M64D13M9D8M21D8M47D6MD2M20D9M14D8M13D4M22D6M16D3MD9M5D4M64DM13D4M3D2M428DM81D11M162D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 77586, "taxon_name": "Leersia perrieri", "assembly": "Lperr_V1.4", "representative": { "id": "LPERR06G07610", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 292, "end": 526, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 585, "end": 733, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 94, 299, 320, 346, 383, 398, 456 ] }, { "node_id": 4737626, "distance_to_parent": 0.003074, "left_index": 335, "right_index": 376, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 98, "children": [ { "node_id": 425711, "distance_to_parent": 0.029223, "left_index": 374, "right_index": 375, "protein_stable_id": "OB06G17800.1", "gene_stable_id": "OB06G17800", "gene_description": "Uncharacterized protein", "sequence": "MSSSAVVASSTTFLVALASASPRGGPSGRGRVAAPAPLALRDGSGRALALRCAQRAPRRRDAFVARADGGENEEPEREDDDDVAVGGWQQPRSRRGGVGVGKVAKRRGSVPPVGRYGSGEAARGRGTAAPAPRQDAASSQNRSILSGDDKPASASSQNGSLVSGDGKPAAATPSITTLKVPAPDSGVIPSVDKSLEIAIPDKMGPTPPSPSVSGLGSSAPFPRLDSAENSELTEEMSERVVQSAPKREAPSSPIPAVQEEAWDFKKYIDFNEPIAEKDYDWVDEDAADSSDNHKDYDSGSLAGENVMNVIVVAAECSPWCKTGGLGDVAGALPKALARRGHRVMVVVPRYGDYEEAQDVGIRKYYKAAGQDLEVKYFHAYIDGVDFVFIDAPLFRHRQDDIYGGSRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFIANDWHTALLPVYLKAYYRDHGTMQYTRSVLVIHNIAHQGRGPVDEFPYMDLPEHYVEHFKLYDPVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTEGGWGLHDIIRQNDWKMNGIVNGIDYREWNPEVDVHLQSDGYTNYTLSSLDAGKRQCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAVPWIVGQDVQLVMLGSGRRDLEVMLQRLEAQHGSKVRGWVGFSVPMAHRITAGADVLLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVTAFDPFGDSGLGWTFDRAEPHKLIEALGHCLDTYRSYKESWRGLQVRGMSQDLSWDHAAELYEEVLVKAKYQW", "cigar": "432D4M91D3M164D2M466DM149D5M36D4MD6M78D2M159D5M8D2M54D7M10DM30D2M9D6M9D5M3D4M57D4M40D2M14D4M13D6M25D2M138D5M124D5M454D10M341D5M8DM12D4M60D2M22D7M43D3MDM49D6MD3M2D7M4D10M15D5M20D10M2D7M4D20MD8MD9M37D2MD2M2D7M3D2MD2M64D13M9D8M21D9M48D4MD2M20D9M14D8M13D3M24D5M16D3MD9M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4533, "taxon_name": "Oryza brachyantha", "assembly": "Oryza_brachyantha.v1.4b", "representative": { "id": "OB06G17800", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 308, "end": 550, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 102, 323, 344, 370, 407, 422, 480 ] }, { "node_id": 4737632, "distance_to_parent": 0.032135, "left_index": 336, "right_index": 373, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425734, "distance_to_parent": 0.020676, "left_index": 371, "right_index": 372, "protein_stable_id": "OPUNC06G08000.1", "gene_stable_id": "OPUNC06G08000", "sequence": "MSSAVVASSTTFLVALASASRGGPRRGRVAAPPALLYDGGAGRLALRAPPRPRPRDAAVVRAGGDGENEAAVERVGDYDDDDEEVSSGAWQPPRSRRVGGGGKVAKRRGTVPPVGRYGSGGDSARGRAAAAPAPAPTQDAAASSKNGALLSGDDDTPASRNGSIVSGDDKPAAATPPVILLKIPAPDSSVILPSVDKPQPEIVVPDATAPPPRGSNFRSSAPLPKPDNSEFAEDKSAKVVESAPKPKAVRSSTIPVVQEETWDFKKYFDLNEPDSAEDDDDWVDADASDSSEIDHDDDSGPLAGENVMNVIVVAAECSPWCKTGMDTMLLFIFIFCSSVLVNLLELLICMNNCCICTGGLGDVAGALPKALARRGHRVMVVVPRYGDYEEAHDVGIRKYYKAAGQDLEVKYFHAFIDGVDFVFIDAPLFRHRQDDIYGGNRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFLANDWHTALLPVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYDPVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTEGGWGLHDIIRENDWKMNGIVNGIDYREWNPEVDVHLQSDGYANYTVTSLDSGKPRCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVMLGSGRRDLEVMLQRFEAQHNGKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVSAFDPFEDSGLGWTFDRAEPHKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D3M2D6M78DM160D5M64D8M39D3M9D6M9D4M4D4M57D4M40D2M14D4M8DM4D7M24D2M120DM17D5MD3M119D6M454D10M342D4M8DM12D4M60D2M22D7M43D3M48D2MD6MD12M3D11M15D3M22D10M2D7M4D27M5D8M5D2M29D2MDM3D7M3D2MD2M64D5M3D5M9D8M21D8M47D6MD2M20D9M14D8M11D4M25D5M16D3MD9M5D4M64DM13D4M3D2M428DM81D13M27D2M4D20M4D16M6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4537, "taxon_name": "Oryza punctata", "assembly": "AVCL00000000", "representative": { "id": "OPUNC06G08000", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 355, "end": 586, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 644, "end": 794, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 103, 379, 405, 442, 457, 515 ] }, { "node_id": 4737635, "distance_to_parent": 0.00654, "left_index": 337, "right_index": 370, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 92, "children": [ { "node_id": 425881, "distance_to_parent": 0.00785, "left_index": 368, "right_index": 369, "protein_stable_id": "OMERI06G09850.1", "gene_stable_id": "OMERI06G09850", "gene_display_label": "OMERI06G09850", "sequence": "MSSAVVASSTTFLVALASSASRGGPRRGRVVGVAAPPALLYDGRAGRLALRAPPPPRRRDAAVVRRAGDGENEAAVERVGDDDDGDDEEFSSGAWQPPRSRRGGVGKVLKRRGTVPPVGRYGSGGDAARVRVAAAPPAPTQDAASSKNGALLSGGGDDDTPASRNGLVVTGADKPAATPPVTIPNLPAPDSPVILPSVDKPQPEFVIPDATAPAPPPPGSNPRSSAPLPEPDNSEFAEDKSAKVVESAPKPKATRSSPIPAVEEETWDFKKYFDLNEPDAAEDGDDDDDWADSDASDSEIDQDDDSGPLAGENVMNVIVVAAECGLGDVAGALPKALARRGHRVMVVVPRYGDYAEAQDVGIRKYYKAAGQDLEVKYFHVFIDGVDFVFIDAPLFRHRQDDIYGGNRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFLANDWHTALLPVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYDPVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTEGGWGLHDIIRENDWKMNGIVNGIDYREWNPEVDVHLQSDGYANYTVASLDSGKPRCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRRDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVSAFDPFEDTGLGWTFDRAEPHKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD6M78DM160D6M44D2M17D8M39D3M9D6M9D5M4D3M57D4M40D2M14D4M8DM4D7M24D2M120DM17D9M119D6M454D8MDM342D4M8DM12D4M60D2M22D7M43D3M48D2MD6MD4MD6M4D12M13D4M22D10M2D7M5D26M5D8M5D3M19DM8D2MDM3D7M3D2MD2M64D5M3D5M9D8M21D8M47D6MD2M20D9M14D8M11D6M22D6M16D3MD4MD4M5D4M64DM13D4M3D2M428DM81D11M162D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 40149, "taxon_name": "Oryza meridionalis", "assembly": "Oryza_meridionalis_v1.3", "representative": { "id": "OMERI06G09850", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 317, "end": 552, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 610, "end": 760, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 107, 324, 345, 371, 408, 423, 481 ] }, { "node_id": 4737636, "distance_to_parent": 0.003114, "left_index": 338, "right_index": 367, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 74, "children": [ { "node_id": 426075, "distance_to_parent": 0.000727, "left_index": 365, "right_index": 366, "protein_stable_id": "KN538722.1_FGP043", "gene_stable_id": "KN538722.1_FG043", "sequence": "MSSAVVASSTTFLVALASSASRGGPGRGRVPAAATPPVTIPNLPAPDSPVILPSVDKPQPEFVIPDATAPAPPPPGSNPRSSAPLPKPDDSEFAEDKSAKVVESAPKPKATRSSPIPAVEEETWDFKKYFDLNEPDAAEDGDDDDDWADSDASDSEIDQDDDSGPLAGENVMNVIVVAAECGLGDVAGALPKALARRGHRVMVVVPRYGDYAEAQDVGIRKYYKAAGQDLEVKYFHAFIDGVDFVFIDAPLFRHRQDDIYGGNRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFLANDWHTALLPVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYDPVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTEGGWGLHDIIRENDWKMNGIVNGIDYREWNPEVDVHLQSDGYANYTVASLDSGKPRCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRRDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVSAFDPFEDTGLGWTFDRAEPHKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD6M78DM160D5M66DM1641D27M5D8M5D3M19DM8D2MDM3D7M3D2MD2M64D5M3D5M9D8M21D8M47D6MD2M20D9M14D8M11D6M22D6M16D3MD4MD4M5D4M64DM13D4M3D2M428DM81D11M162D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4528, "taxon_name": "Oryza longistaminata", "assembly": "O_longistaminata_v1.0", "representative": { "id": "KN538722.1_FG043", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 174, "end": 409, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 467, "end": 617, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 30, 181, 202, 228, 265, 280, 338 ] }, { "node_id": 4737640, "distance_to_parent": 0.002113, "left_index": 339, "right_index": 364, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 10, "children": [ { "node_id": 425706, "distance_to_parent": 0.002487, "left_index": 362, "right_index": 363, "protein_stable_id": "OGLUM06G08830.1", "gene_stable_id": "OGLUM06G08830", "sequence": "MSSAVVASSTTFLVALASSASRGGPRRGRVVGVAAPPALLYDGRAGRLALRAPPPPRPRPRRRDAGVVRRADDGENEAAVERAGEDDDDEEEFSSGAWQPPRSRRGGVGKVLKRRGTVPPVGRYGSGGDAARVRGAAAPAPAPTQDAASSKNGALLSGRDDDTPASRNGSVVTGADKPAAATPPVTITKLPAPDSPVILPSVDKPQPEFVIPDATAPAPPPPGSNPRSSAPLPKPDNSEFAEDKSAKVVESAPKPKATRSSPIPAVEEETWDFKKYFDLNEPDAAEDGDDDDDWADSDASDSEIDQDDDSGPLAGENVMNVIVVAAECSPWCKTGGLGDVAGALPKALARRGHRVMVVVPRYGDYAEAQDVGIRKYYKAAGQDLEVKYFHAFIDGVDFVFIDAPLFRHRQDDIYGGNRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFLANDWHTALLPVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYDPVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTEGGWGLHDIIRENDWKMNGIVNGIDYREWNPEVDVHLQSDGYANYTVASLDSGKPRCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRRDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVSAFDPFEDTGLGWTFDRAEPHKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD6M78DM160D6M44D2M17D8M39D3M9D6M9D12M57D4M40D2M14D4M8DM4D7M24D2M120DM17D5MD3M119D6M454D8MDM342D4M8DM12D4M60D2M22D7M43D3M48D2MD6MD11M4D11M14D4M22D10M2D7M4D27M5D8M5D3M19DM8D2MDM3D7M3D2MD2M64D5M3D5M9D8M21D8M47D6MD2M20D9M14D8M11D6M22D6M16D3MD4MD4M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 40148, "taxon_name": "Oryza glumipatula", "assembly": "ALNU02000000", "representative": { "id": "OGLUM06G08830", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 320, "end": 563, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 621, "end": 771, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 110, 335, 356, 382, 419, 434, 492 ] }, { "node_id": 4737643, "distance_to_parent": 0, "left_index": 340, "right_index": 361, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 4, "children": [ { "node_id": 4737655, "distance_to_parent": 0.001656, "left_index": 355, "right_index": 360, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 88, "children": [ { "node_id": 426042, "distance_to_parent": 0, "left_index": 358, "right_index": 359, "protein_stable_id": "OBART06G08250.1", "gene_stable_id": "OBART06G08250", "sequence": "MSSAVVASSTTFLVALASSASRGGPRRGRVVGVAAPPALLYDGRAGRLALRAPPPPRPRPRRRDAGVVRRADDGENEAAVERAGEDDDEEEEFSSGAWQPPRSRRGGVGKVLKRRGTVPPVGRYGSGGDAARVRGAAAPAPAPTQDAASSKNGALLSGRDDDTPASRNGSVVTGADKPAAATPPVTITKLPAPDSPVILPSVDKPQPEFVIPDATAPAPPPPGSNPRSSAPLPKPDNSEFAEDKSAKVVESAPKPKVTRSSPIPAVEEETWDFKKYFDLNEPDAAEDGDDDDDWADSDASDSEIDQDDDSGPLAGENVMNVIVVAAECSPWCKTGGLGDVAGALPKALARRGHRVMVVVPRYGDYAEAQDVGIRKYYKAAGQDLEVKYFHAFIDGVDFVFIDAPLFRHHQDDIYGGNRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFLANDWHTALLPVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYDPVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTEGGWGLHDIIRENDWKMNGIVNGIDYREWNPEVDVHLQSDGYANYTVASLDSGKPRCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRRDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVSAFDPFEDTGLGWTFDRAEPHKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD6M78DM160D6M44D2M17D8M39D3M9D6M9D12M57D4M40D2M14D4M8DM4D7M24D2M120DM17D5MD3M119D6M454D8MDM342D4M8DM12D4M60D2M22D7M43D3M48D2MD6MD11M4D11M14D4M22D10M2D7M4D27M5D8M5D3M19DM8D2MDM3D7M3D2MD2M64D5M3D5M9D8M21D8M47D6MD2M20D9M14D8M11D6M22D6M16D3MD4MD4M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 65489, "taxon_name": "Oryza barthii", "assembly": "O.barthii_v1", "representative": { "id": "OBART06G08250", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 320, "end": 563, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 621, "end": 771, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 110, 335, 356, 382, 419, 434, 492 ] }, { "node_id": 425921, "distance_to_parent": 0, "left_index": 356, "right_index": 357, "protein_stable_id": "ORGLA06G0078600.1", "gene_stable_id": "ORGLA06G0078600", "gene_description": "Uncharacterized protein", "sequence": "MSSAVVASSTTFLVALASSASRGGPRRGRVVGVAAPPALLYDGRAGRLALRAPPPPRPRPRRRDAGVVRRADDGENEAAVERAGEDDDEEEEFSSGAWQPPRSRRGGVGKVLKRRGTVPPVGRYGSGGDAARVRGAAAPAPAPTQDAASSKNGALLSGRDDDTPASRNGSVVTGADKPAAATPPVTITKLPAPDSPVILPSVDKPQPEFVIPDATAPAPPPPGSNPRSSAPLPKPDNSEFAEDKSAKVVESAPKPKVTRSSPIPAVEEETWDFKKYFDLNEPDAAEDGDDDDDWADSDASDSEIDQDDDSGPLAGENVMNVIVVAAECSPWCKTGGLGDVAGALPKALARRGHRVMVVVPRYGDYAEAQDVGIRKYYKAAGQDLEVKYFHAFIDGVDFVFIDAPLFRHRQDDIYGGNRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFLANDWHTALLPVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYDPVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTEGGWGLHDIIRENDWKMNGIVNGIDYREWNPEVDVHLQSDGYANYTVASLDSGKPRCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRRDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVSAFDPFEDTGLGWTFDRAEPHKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLVKAKYQW", "cigar": 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"Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 621, "end": 771, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 110, 335, 356, 382, 419, 434, 492 ] } ], "representative": { "id": "OBART06G08250", "score": 0 } }, { "node_id": 4737647, "distance_to_parent": 0, "left_index": 341, "right_index": 354, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "dubious", "bootstrap": 2, "duplication_confidence_score": 0, "children": [ { "node_id": 4737650, "distance_to_parent": 0.001658, "left_index": 348, "right_index": 353, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 89, "children": [ { "node_id": 425999, "distance_to_parent": 0.00167, "left_index": 351, "right_index": 352, "protein_stable_id": "BGIOSGA022586-PA", "gene_stable_id": "BGIOSGA022586", "gene_description": "Soluble starch synthase 2-3, chloroplastic/amyloplastic", "sequence": "MSSAVVASSTTFLVALASSASRGGPRRGRVVGVAAPPALLYDGRAGRLALRAPPPPRPRPRRRDAGVVRRADDGENEAAVERAGEDDDEEEEFSSGAWQPPRSRRGGVGKVLKRRGTVPPVGRYGSGGDAARVRGAAAPAPAPTQDAASSKNGALLSGRDDDTPASRNGSVVTGADKPAAATPPVTITKLPAPDSPVILPSVDKPQPEFVIPDATAPAPPPPGSNPRSSAPLPKPDNSEFAEDKSAKVVESAPKPKATRSSPIPAVEEETWDFKKYFDLNEPDAAEDGDDDDDWADSDASDSEIDQDDDSGPLAGENVMNVIVVAAECGLGDVAGALPKALARRGHRVMVVVPRYGDYAEAQDVGIRKYYKAAGQDLEVKYFHAFIDGVDFVFIDAPLFRHRQDDIYGGNRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFLANDWHTALLPVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYDPVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTEGGWGLHDIIRENDWKMNGIVNGIDYREWNPEVDVHLQSDGYANYTVASLDSSKPRCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRRDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVSAFDPFEDTGLGWTFDRAEPHKLIEALGHCLETYRKYKESWRGFQVRGMSQDLSWDHAAELYEEVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD6M78DM160D6M44D2M17D8M39D3M9D6M9D12M57D4M40D2M14D4M8DM4D7M24D2M120DM17D5MD3M119D6M454D8MDM342D4M8DM12D4M60D2M22D7M43D3M48D2MD6MD11M4D11M14D4M22D10M2D7M4D27M5D8M5D3M19DM8D2MDM3D7M3D2MD2M64D5M3D5M9D8M21D8M47D6MD2M20D9M14D8M11D6M22D6M16D3MD4MD4M5D4M64DM13D4M3D2M428DM81D11M162D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 39946, "taxon_name": "Oryza sativa Indica Group", "assembly": "ASM465v1", "representative": { "id": "BGIOSGA022586", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 321, "end": 556, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 614, "end": 764, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 110, 328, 349, 375, 412, 427, 485 ] }, { "node_id": 425935, "distance_to_parent": 0.000828, "left_index": 349, "right_index": 350, "protein_stable_id": "OS06T0229800-01", "gene_stable_id": "OS06G0229800", "gene_display_label": "SSII-3", "gene_description": "Soluble starch synthase 2-3, chloroplastic/amyloplastic", "sequence": "MSSAVVASSTTFLVALASSASRGGPRRGRVVGVAAPPALLYDGRAGRLALRAPPPPRPRPRRRDAGVVRRADDGENEAAVERAGEDDDEEEEFSSGAWQPPRSRRGGVGKVLKRRGTVPPVGRYGSGGDAARVRGAAAPAPAPTQDAASSKNGALLSGRDDDTPASRNGSVVTGADKPAAATPPVTITKLPAPDSPVILPSVDKPQPEFVIPDATAPAPPPPGSNPRSSAPLPKPDNSEFAEDKSAKVVESAPKPKATRSSPIPAVEEETWDFKKYFDLNEPDAAEDGDDDDDWADSDASDSEIDQDDDSGPLAGENVMNVIVVAAECSPWCKTGGLGDVAGALPKALARRGHRVMVVVPRYGDYAEAQDVGIRKYYKAAGQDLEVKYFHAFIDGVDFVFIDAPLFRHRQDDIYGGNRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFLANDWHTALLPVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYDPVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTEGGWGLHDIIRENDWKMNGIVNGIDYREWNPEVDVHLQSDGYANYTVASLDSSKPRCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRRDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTMSAFDPFEDTGLGWTFDRAEPHKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD6M78DM160D6M44D2M17D8M39D3M9D6M9D12M57D4M40D2M14D4M8DM4D7M24D2M120DM17D5MD3M119D6M454D8MDM342D4M8DM12D4M60D2M22D7M43D3M48D2MD6MD11M4D11M14D4M22D10M2D7M4D27M5D8M5D3M19DM8D2MDM3D7M3D2MD2M64D5M3D5M9D8M21D8M47D6MD2M20D9M14D8M11D6M22D6M16D3MD4MD4M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 39947, "taxon_name": "Oryza sativa Japonica Group", "assembly": "IRGSP-1.0", "representative": { "id": "OS06G0229800", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 320, "end": 563, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 110, 333, 356, 382, 419, 434, 492 ] } ], "representative": { "id": "OS06G0229800", "score": -149.999172 } }, { "node_id": 4737652, "distance_to_parent": 0, "left_index": 342, "right_index": 347, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 6, "children": [ { "node_id": 425802, "distance_to_parent": 0.002485, "left_index": 345, "right_index": 346, "protein_stable_id": "ONIVA06G09520.1", "gene_stable_id": "ONIVA06G09520", "sequence": "MSSAVVASSTTFLVALASSASRGGPRRGRVVGVAAPPALLYDGRAGRLALRAPPPARPRPRRRDAGVVRRADDGENEAAVERAGEDDDEEEEFSSGAWQPPRSRRGGVGKVLKRRGPVPPVGRYGSGGDAARVRGAAAPAPAPTQDAASSKNGALLSGRDDDTPASRNGSVVTGADKPAAATPPVTITKLPAPDSPVILPSVDKPQPEFVIPDATAPAPPPPGSNPRSSAPLPKPDNSEFAEDKSAKVVESAPKPKATRSSPIPAVEEETWDFKKYFDLNEPEAAEDGDDDDDWADSDASDSEIDQDDDSGPLAGENVMNVIVVAAECSPWCKTGGLGDVAGALPKALARRGHRVMVVVPRYGDYAEAQDVGIRKYYKAAGQDLEVKYFHAFIDGVDFVFIDAPLFRHRQDDIYGGNRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFLANDWHTALLPVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYDPVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTEGGWGLHDIIRENDWKMNGIVNGIDYREWNPEVDVHLQSDGYANYTVASLDSGKPRCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRRDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVSAFDPFEDTGLGWTFDRAEPHKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD6M78DM160D6M44D2M17D8M39D3M9D6M9D12M57D4M40D2M14D4M8DM4D7M24D2M120DM17D5MD3M119D6M454D8MDM342D4M8DM12D4M60D2M22D7M43D3M48D2MD6MD11M4D11M14D4M22D10M2D7M4D27M5D8M5D3M19DM8D2MDM3D7M3D2MD2M64D5M3D5M9D8M21D8M47D6MD2M20D9M14D8M11D6M22D6M16D3MD4MD4M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4536, "taxon_name": "Oryza nivara", "assembly": "AWHD00000000", "representative": { "id": "ONIVA06G09520", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 320, "end": 563, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 621, "end": 771, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 110, 335, 356, 382, 419, 434, 492 ] }, { "node_id": 425963, "distance_to_parent": 0.001657, "left_index": 343, "right_index": 344, "protein_stable_id": "ORUFI06G08580.1", "gene_stable_id": "ORUFI06G08580", "sequence": "MSSAVVASSTTFLVALASSASRGGRGRVVGVAAPPALLYDGRAGRLALRAPPPPRPRPRRRDAGVVRRADDGENEAAVERAGEDDDEEEEFSSGAWQPPRSRRGGVGKVLKRRGTVPPVGRYGSGGDAARVRGAAAPAPAPTQDASSSKNGALLSGRDEDTPASRNGSVVTGADKPAAATPPVTITKLPAPDSPVILPSVDKPQPEFVIPDATAPAPPPPGSNPRSSAPLPKPDNSEFAEDKSAKVVESAPKPKATRSSPIPAVEEETWDFKKYFDLNEPDAAEDGDDDDDWADSDASDSEIDQDDDSGPLAGENVMNVIVVAAECSPWCKTGGLGDVAGALPKALARRGHRVMVVVPRYGDYAEAQDVGIRKYYKAAGQDLEVKYFHAFIDGVDFVFIDAPLFRHRQDDIYGGNRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFLANDWHTALLPVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYDPVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTEGGWGLHDIIRENDWKMNGIVNGIDYREWNPEVDVHLQSDGYANYTVASLDSGKPRCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRRDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVSAFDPFEDTGLGWTFDRAEPHKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD6M240D5M44D2M17D8M39D3M9D6M9D12M57D4M40D2M14D4M8DM4D7M24D2M120DM17D5MD3M119D6M454D8MDM342D4M8DM12D4M60D2M22D7M43D3M48D2MD6MD11M4D11M14D4M22D10M2D7M4D27M5D8M5D3M19DM8D2MDM3D7M3D2MD2M64D5M3D5M9D8M21D8M47D6MD2M20D9M14D8M11D6M22D6M16D3MD4MD4M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4529, "taxon_name": "Oryza rufipogon", "assembly": "OR_W1943", "representative": { "id": "ORUFI06G08580", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 318, "end": 561, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 619, "end": 769, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 108, 333, 354, 380, 417, 432, 490 ] } ], "representative": { "id": "ORUFI06G08580", "score": 0.001657 } } ], "representative": { "id": "OS06G0229800", "score": -149.997514 } } ], "representative": { "id": "OS06G0229800", "score": -149.997514 } } ], "representative": { "id": "OS06G0229800", "score": -149.997514 } } ], "representative": { "id": "OS06G0229800", "score": -149.995401 } } ], "representative": { "id": "OS06G0229800", "score": -149.99228699999998 } } ], "representative": { "id": "OS06G0229800", "score": -149.98574699999998 } } ], "representative": { "id": "OS06G0229800", "score": -149.95361199999996 } } ], "representative": { "id": "OS06G0229800", "score": -149.95053799999997 } }, { "node_id": 4737584, "distance_to_parent": 0.030556, "left_index": 308, "right_index": 333, "taxon_id": 147368, "taxon_name": "Pooideae", "node_type": "speciation", "bootstrap": 99, "children": [ { "node_id": 425732, "distance_to_parent": 0.05521, "left_index": 331, "right_index": 332, "protein_stable_id": "BRADI1G45130.1", "gene_stable_id": "BRADI1G45130", "sequence": "MLSAVASPASFLALASASRRQPRVSTAPPLHAGANRCLALHHWPPPQRTARDGAVVRAEAGAAGKKDARGDDAAPAAARQPRLRRGGAAGKVAKRRDPAVRPVDRYGSGDAAGTAHQSPPTPRQDAPQPRVPILNGVLVSGEDKSIVTAPPTKIVKVPTPDSGAILTARNKAAESIVLVKKTPPPSGSNFASSVSAPRSNTASNVELVEKKGAEIAKEAPKPKSSVSAPRSDIVGHVEPAEKKGADIVKEASKLKTPVTAPRSDTVNNLEPAEKKGADIVKEAPKPKTLPPPAAPTVQEAAWDFKKYIGFEESAEVKDNGLAAADGAGSFEDHQNNHSGPLAGENVMNVIVVAAEWGLGDVAGALPKALARRGHRVMVVVPRYGDYQEAYDLGIRKYYKAAGQDLEVNYFHAYIDGVDFVFIDAPLFRHRQGDIYGGSRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFIANDWHTALLPVYLKAYYRDHGLMQYTRSVLVIHNIAHQGRGPVDEFPFTDLPEHYLEHFKLYDPVGGEHANYFAAGLKMADQVVAVSRGYLWELKTVEGGWGLHDIIRQNDWKINGIVNGIDNKEWNPEVDVHLQSDGYTNYSLRTLDAGKRQCKASLQRELGLQVRDDVPLIGFIGRLDGQKGVEIIGDAMPWIVSQDVQLVMLGTGRSDLEQMLQHFEWQHKDKVRGWVGFSVPMAHRITAGVDVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVSPFDPFGDSGLGWTFDRAEAHKLIEALGHCLDTYRNYRESWRGLQQRGMSQDFSWDHAAQLYEDVLVKAKYQW", "cigar": "432D3M92D2M165D2M466DM149D4M37D4MDM83D2M159D5M7D3M54DMDM2D2M10DM30D2M9D7M8D3M5D4MDM51DM3D4M40D2M14D4M3D3M7D4M24D2M141D3M126D5M454D10M342D4M8DM12D4M60D2M21D8M43D2M49D2MD6MD3M2D21M15D6M43D26M6D6M6D3M28D2MDM3D7M3D2MD79M9D8M21D8M47D6MD2M20D9M14D8M13D3M24D5M16D3MD9M5D4M64DM13D4M3D2M428DM81D10M30DM132D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 15368, "taxon_name": "Brachypodium distachyon", "assembly": "v1.0", "representative": { "id": "BRADI1G45130", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 357, "end": 583, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 91, 356, 377, 403, 440, 455, 513 ] }, { "node_id": 4737592, "distance_to_parent": 0.052276, "left_index": 309, "right_index": 330, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 63, "children": [ { "node_id": 425658, "distance_to_parent": 0.018068, "left_index": 328, "right_index": 329, "protein_stable_id": "MLOC_69670.1", "gene_stable_id": "MLOC_69670", "gene_description": "Uncharacterized protein", "sequence": "MLYMQGRGPVDEFPFTELPEHYLEHFRLYDPVGGEHANYFAAGLKMADQVVVVSPGYLWELKTVEGGWGLHDIIRQNDWKTRGIVNGIDNMEWNPEVDVHLKSDGYTNFSLKTLDSGKRQCKEALQRELGLQVRGDVPLLGFIGRLDGQKGVEIIADAMPWIVSQDVQLVMLGTGRHDLESMLQHFEREHHDKVRGWVGFSVRLAHRITAGADALLMPSRFEPCGLNQLYAMAYGTIPVVHAVGGLRDTVPPFDPFNHSGLGWTFDRAEAHKLIEALGHCLRTYRDHKESWRGLQERGMSQDFSWEHAAKLYEDVLVQAKYQW", "cigar": "4931D4M85D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 112509, "taxon_name": "Hordeum vulgare subsp. vulgare", "assembly": "ASM32608v1", "representative": { "id": "MLOC_69670", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 3, "end": 75, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 135, "end": 279, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ] }, { "node_id": 4737596, "distance_to_parent": 0.004595, "left_index": 310, "right_index": 327, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 49, "children": [ { "node_id": 426071, "distance_to_parent": 0.012463, "left_index": 325, "right_index": 326, "protein_stable_id": "TRIAE_CS42_7BS_TGACv1_592860_AA1945350.1", "gene_stable_id": "TRIAE_CS42_7BS_TGACv1_592860_AA1945350", "sequence": "MSSAVASAASFLALASASPGRSRRRTRVSASPPHTGAGRLHWPPSPPQRTARDGAVAARAAGKKDAGIDDAAPARQPRALRGGAATKVAERRDPVKTLDRDAAEGGAPSPPAPRQEDARLPSMNGMPVNGENKSTGGGGATKDSGLPAPARAPQPSSQNRVPVNGENKANVASPPTSIAEVAAPDPAATISISDKAPESVVPAEKAPPSSGSNFVPSASAPGSDTVSDVELELKKGAVIVKEAPNPKALSPPAAPAVQQDLWDFKKYIGFEEPVEAKDDGRAVADDAGSFEHHQNHDSGPLAGENVMNVVVVAAECSPWCKTGGLGDVAGALPKALAKRGHRVMVVVPRYGDYEEAYDVGVRKYYKAAGQDMEVNYFHAYIDGVDFVFIDAPLFRHRQEDIYGGSRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFIANDWHTALLPVYLKAYYRDHGLMQYTRSIMVIHNIAHQGRGPVDEFPFTELPEHYLEHFRLYDPVGGEHANYFAAGLKMADQVVVVSPGYLWELKTVEGGWGLHDIIRQNDWKTRGIVNGIDNMEWNPEVDVHLKSDGYTNFSLGTLDSGKRQCKEALQRELGLQVRGDVPLLGFIGRLDGQKGVEIIADAMPWIVSQDVQLVMLGTGRHDLEGMLRHFEREHHDKVRGWVGFSVRLAHRITAGADALLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVPPFDPFNHSGLGWTFDRAEAQKLIEALGHCLRTYRDYKESWRGLQERGMSQDFSWEHAAKLYEDVLVKAKYQW", "cigar": "432D3M92D2M165D2M466DM149D4M37D4MD3MD2M78D2M159D5M7D3M54DMDM3DM10DM30D2M9D3M12D5M3D4MDM51DM3D4M40D2M17DM3D3M7D4M24D2M141D3M127DMD2M454D10M342D4M8DM12D4M60D2M22D6M96DMD6MD3M2D7M2D12M15D7M2D26M2D7M4D27M6D6M6D3M28D2MDM3D7M3D2MD2M64D13M9D8M21D8M47D6MD2M20D9M14D8M13D3M24D5M16D3MD9M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_7BS_TGACv1_592860_AA1945350", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 308, "end": 550, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 610, "end": 755, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 87, 323, 344, 370, 407, 422, 480 ] }, { "node_id": 4737598, "distance_to_parent": 0.005028, "left_index": 311, "right_index": 324, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 45, "children": [ { "node_id": 4737602, "distance_to_parent": 0.009202, "left_index": 318, "right_index": 323, "taxon_id": 4564, "taxon_name": "Triticum", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425724, "distance_to_parent": 0.004378, "left_index": 321, "right_index": 322, "protein_stable_id": "TRIUR3_14117-P1", "gene_stable_id": "TRIUR3_14117", "sequence": "MTLWLGELRWSEEIRTKPSTISISDKAPESVAPAEKPPPSSGSNFVVSASAPRLDIDSDVEPELKKGAVIVEEAPNPKALSPPAAPAVQEDLWDFKKYIGFEEPVEAKDDGWAVEDDAGSFEHHQNHDSGPLAGENVMNVVVVAAECGLGDVAGALPKALAKRGHRVMVVVPRYGDYEEAYDVGVRKYYKAAGQDMEVNYFHAYIDGVDFVFIDAPIFRHRQEDIYGGSRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFIANDWHTALLPVYLKAYYRDHGLMQYTRSIMVIHNIAHQHRQVSINTDIIHDLIQLFLNKPTSSLNSGSTFMVAQVLRTIARSGNVVVMTIHQPNTQNPQHHLTGRGPVDEFPFTELPEHYLEHFRLYDPVGGEHANYFAAGLKMADQVVVVSPGYLWELKTVEGGWGLHDIIRQNDWKTRGIVNGIDNMEWNPEVDVHLQSDGYTNFSLSTLDSGKRHCKEALQRELGLQLYAMAYGTVPVVHAVGGLRDTVPPFDPFNHSGLGWTFDRAEAHKLIEALGHCLRTYRDYKESWRGLQERGMSQDFSWEHAAKLYEDVLLKAKYQW", "cigar": "1313D3M37D4MDM387D3M1562DM4D6M12D9M6D6M6D3M28D2MDM3D7M3D2MD2M64D13M9D8M21D8M47D6MD2M20D9M14D8M13D3M24D5M16D3MD9M5D4M64DM13D4M3D2M428DM81D11M162D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3D2M3D80M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D2M424D9M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4572, "taxon_name": "Triticum urartu", "assembly": "ASM34745v1", "representative": { "id": "TRIUR3_14117", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 140, "end": 307, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 19, 147, 168, 194, 231, 246, 304, 369, 496 ] }, { "node_id": 426034, "distance_to_parent": 0, "left_index": 319, "right_index": 320, "protein_stable_id": "TRIAE_CS42_7AS_TGACv1_569190_AA1809640.1", "gene_stable_id": "TRIAE_CS42_7AS_TGACv1_569190_AA1809640", "sequence": "MHQPTNETVQLLTVLHPSKKKSCSALSIYLHNQRGPPAPSPQAPFRPQSSRGFCNLLPAACHHGRFLVRCSRGTGPAFQRAPRGPRPQIADPTRHPPGGRSYVPAPRVKPPPSSPSPARGHFPGLTPCVYPTEHTPVQSSPLPPRYSPLPLPPPPPAPRSGRRTNPRIVPSPAPIPAAAMSSAVASAASFLALASASPGRSRRRARVSAPPPHAGAGRLHWPPWPPQRTARDGGVAARAAGKKDARVDDDAASARQPRARRGGAATKVAERRDPVKTLDRDAAEGGAPAPPAPRQDAARPPSMNGTPVNGENKSTGGGGATKDSGLPAPARAPHPSTQNRVPVNGENKANVASPPTSIAEVVAPDSAATISISDKAPESVVPAEKPPPSSGSNFVVSASAPRLDIDSDVEPELKKGAVIVEEAPNPKALSPPAAPAVQEDLWDFKKYIGFEEPVEAKDDGWAVADDAGSFEHHQNHDSGPLAGENVMNVVVVAAECSPWCKTGGLGDVAGALPKALAKRGHRVMVVVPRYGDYEEAYDVGVRKYYKAAGQDMEVNYFHAYIDGVDFVFIDAPIFRHRQEDIYGGSRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFIANDWHTALLPVYLKAYYRDHGLMQYTRSIMVIHNIAHQGRGPVDEFPFTELPEHYLEHFRLYDPVGGEHANYFAAGLKMADQVVVVSPGYLWELKTVEGGWGLHDIIRQNDWKTRGIVNGIDNMEWNPEVDVHLQSDGYTNFSLSTLDSGKRQCKEALQRELGLQVRADVPLLGFIGRLDGQKGVEIIADAMPWIVSQDVQLVMLGTGRHDLESMLRHFEREHHDKVRGWVGFSVRLAHRITAGADALLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVPPFDPFNHSGLGWTFDRAEAHKLIEALGHCLRTYRDYKESWRGLQERGMSQDFSWEHAAKLYEDVLLKAKYQW", "cigar": "7D3M14D4M22D4M28D7M6D2M6D4M81D16M82D14M7D128M92D2M165D2M466DM149D4M37D4MD3MD2M78D2M159D5M7D3M54DMDM3DM10DM30D2M9D3M12D5M3D4MDM51DM3D4M40D2M17DM3D3M7D4M24D2M141D3M126D2MD2M454D10M342D4M8DM12D4M60D2M22D6M96DMD6MD3M2D7M2D12M15D7M2D26M2D7M4D27M6D6M6D3M28D2MDM3D7M3D2MD2M64D13M9D8M21D8M47D6MD2M20D9M14D8M13D3M24D5M16D3MD9M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_7AS_TGACv1_569190_AA1809640", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 488, "end": 730, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 791, "end": 934, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 267, 503, 524, 550, 587, 602, 660 ] } ], "representative": { "id": "TRIAE_CS42_7AS_TGACv1_569190_AA1809640", "score": 0 } }, { "node_id": 4737599, "distance_to_parent": 0.007072, "left_index": 312, "right_index": 317, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 71, "children": [ { "node_id": 425780, "distance_to_parent": 0.031181, "left_index": 315, "right_index": 316, "protein_stable_id": "EMT13996", "gene_stable_id": "F775_20620", "gene_description": "Soluble starch synthase 2-3, chloroplastic/amyloplastic", "sequence": "MPVNGETKSTGGGGATKDSGLPTPARAPHPSTQNRAPVNATISISDKAPESVVPAEKTPPSSGSNFESSASAPGSDTVSDVEQELKKGAVVVEEAPKPKALSPPAAPAVQEDLWDFKKYIGFEEPVEAKDDGRAVADDAGSFEHHQNHDSGPLAGENVMNVVVVAAECSPWCKTGMDITSSVSLPVVHKTLLELLIRTNIVLHRWSGRCCGCSAQGFGKERTSCYGTTSFHLTLLGPYVRIISVVVPRYGDYEEAYDVGVRKYYKAAGQDMEVNYFHAYIDGVDFVFIDAPLFRHRQEDIYGGSRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFIANDWHTALLPVYLKAYYRDHGLMQYTRSIMVIHNIAHQLLDRAYVAIGPTHSLFTCGPHLSTYDINKWKFIIKMMAWGLENGTSQGRGPVDEFPFTELPEHYLEHFRLYDPVGGEHANYFAAGLKMADQVVVVSPGYLWELKTVEGGWGLHDIIRQNDWKTRGIVNGIDNMEWNPEVDAHLKSDGYTNFSLRTLDSGKRQCKEALQRELGLQVRADVPLLGFIGRLDGQKGVEIIADAMPWIVSQDVQLVMLGTGRHDLESMLRHFEREHHDKVRGWVGFSVRLAHRITAGADALLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVPPFDPFNHSGLGWTFDRAEAHKLIEALGHCLRTYRDFKESWRALQERGMSQDFSWEHAAKLYEDVLVKAKYQW", "cigar": 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transferase, family 1" } ], "exon_junctions": [ 40, 243, 269, 306, 321, 379, 426 ] }, { "node_id": 425843, "distance_to_parent": 0.002268, "left_index": 313, "right_index": 314, "protein_stable_id": "TRIAE_CS42_7DS_TGACv1_624145_AA2059200.1", "gene_stable_id": "TRIAE_CS42_7DS_TGACv1_624145_AA2059200", "sequence": 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"432D3M92D2M165D2M466DM149D4M37D4MD3MD2M78D2M159D5M7D3M54DMDM3DM10DM30D2M9D3M12D5M3D4MDM51DM3D4M40D2M17DM3D3M7D4M24D2M141D3M126D2MD2M454D10M342D4M8DM12D4M60D2M22D6M96DMD6MD3M2D7M2D12M15D7M2D26M2D7M4D27M6D6M6D3M28D2MDM3D7M3D2MD2M64D13M9D8M21D8M47D6MD2M20D9M14D8M13D3M24D5M16D3MD9M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_7DS_TGACv1_624145_AA2059200", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 309, "end": 551, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 612, "end": 754, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 88, 324, 345, 371, 408, 423, 481 ] } ], "representative": { "id": "F775_20620", "score": -99.968819 } } ], "representative": { "id": "F775_20620", "score": -99.961747 } } ], "representative": { "id": "F775_20620", "score": -99.956719 } } ], "representative": { "id": "F775_20620", "score": -99.95212400000001 } } ], "representative": { "id": "F775_20620", "score": -99.899848 } } ], "representative": { "id": "OS06G0229800", "score": -149.89874799999996 } } ], "representative": { "id": "OS06G0229800", "score": -149.89346099999995 } }, { "node_id": 4737539, "distance_to_parent": 0.053146, "left_index": 228, "right_index": 305, "taxon_id": 4479, "taxon_name": "Poaceae", "node_type": "speciation", "bootstrap": 18, "children": [ { "node_id": 4737575, "distance_to_parent": 0.040369, "left_index": 291, "right_index": 304, "taxon_id": 147369, "taxon_name": "Panicoideae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425836, "distance_to_parent": 0.018699, "left_index": 302, "right_index": 303, "protein_stable_id": "Si016492m", "gene_stable_id": "Si016492m.g", "gene_description": "Uncharacterized protein", "sequence": "MSGAIASSSSAFLLLVASSSPRRRRSRVGAALRSYRYSYGGAELRLHWTRRGLLRNGAAVVRAAAEPAGGEGEEAAAAGESSTPKGVTVQGSKAKAAGSAPPPKPVTSAPKQRHSAAKQNGALGSSSASKPGAPASEPIAESTAPVSERTETETDASAKVEEPKPTALDDAKESVGIAEPVEAKAGAAVAADAATSAADGSEDKEPGPLAGPNVMNVVVVASECAPFCKTGGLGDVVGALPKALARRGHRVMVVIPRYGEYAEARDLGVRRRYRVAGQDSEVTYFHSYIDGVDFVFIEAPPFRHRHNDIYGGERLDVLKRMILFCKAAVEVPWYAPCGGTVYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYARSVLVIHNIAHQGRGPVDDFFNFDLPEHYIDHFKLYDPVGGDHSNVFAAGLKMADRVVTVSRGYLWELRTSEGGWGLHDIINQNDWKLDGIVNGIDMSEWNPAVDVHLHSDDYTNYTFETLDTGKRQCKAALQRQLGLQVRDDVPLIGFIGRLDHQKGVDIIADAIHWIAGQDVQLVMLGTGRPDLEEMLRRCEAEHGDKVRAWVGFSVPMAHRITAGADVLLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFADAGLGWTFDRAEANRMIDALGHCLNTYRNYKESWRGLQARGMAQDLSWDHAAELYEDVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD2M82D3M158D5M7D3M54D7M10DM29D3M9D4M11D7MDM60D4M37DM2D2M14D4M3D3M7DM170DMDM126D5M459D5M342D4M8DM12D4M60D2M74DM45D5MD6MD3M2D7M55D9M2D4M39D7M6D3M31D2M12D2MD2M64D5M3D5M9D8M21D4M83D7M13D8M13D3M24D5M16D13M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4555, "taxon_name": "Setaria italica", "assembly": "JGIv2.0", "representative": { "id": "Si016492m.g", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 216, "end": 458, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 517, "end": 663, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 95, 231, 252, 278, 315, 330, 388 ] }, { "node_id": 4737576, "distance_to_parent": 0.032442, "left_index": 292, "right_index": 301, "taxon_id": 147429, "taxon_name": "Andropogoneae", "node_type": "speciation", "bootstrap": 77, "children": [ { "node_id": 426006, "distance_to_parent": 0.028665, "left_index": 299, "right_index": 300, "protein_stable_id": "EES05532", "gene_stable_id": "SORBI_004G238600", "gene_description": "hypothetical protein", "sequence": "MSAAISSSSSAFLLLIASSSPRRRRGRVGAALRSYGYSGAELRLHWARRAPSRDAAAVVVRAAAAPAGGEEGEEAAAAGMSSSSKGVAVQGSKAKAVDSTSPPKPVTSATKQSPSAANQNGTVGSSSASKSATPVSELKAETSAPVTKTETDASAKVEEPKPAVDDAKPVESIGVAEPVDAKVDVAAATDVEASAADDSEDKKPGPLAGPNVMNVVVVASECAPFCKTGGLGDVVGALPKALARRGHRVMVVIPRYGEYAEARDLGVRKRYRVAGQDSEVTYFHSYIDGVDFVFIEAPPFRHRHNNIYGGERLDILKRMILFCKAAVEVPWYAPCGGTVYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYARSVLVIHNIAHQGRGPVDDFVNFDLPEHYIDHFKLYDNIGGDHSNVFAAGLKAADRVVTVSNGYLWELKTSEGGWGLHDIINQNDWKLQGIVNGIDMSEWNPAVDVHLHSDGYTNYTFETLDTGKRQCKAALQRQLGLQVRDDVPLIGFIGRLDGQKGVDLIGDAIHWIAGQDVQLVMLGTGRPDLEDMLRRCEAEHNDKVRAWVGFSVPLAHRITAGADVLLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFNDTGLGWTFDRAEANRMIDALHHCLNTYRNFKESWRGLQERGMAQDLSWDHAAVLYEDVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD2M82D3M158D5M7D3M54D7M41D2M9D4M11D7MDM60D4M37DMD3M14D4M3D3M7DM170D3M126D5M459D5M342D4M8DM12D4M60D2M74DM45D5MD6MD3M2D7M55D9M2D4M39D7M6D3M31D2M12D2MD2M64D3M6D4M9D8M21D4M84D7M11D9M13D3M24D5M16D13M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4558, "taxon_name": "Sorghum bicolor", "assembly": "Sorghum_bicolor_v2", "representative": { "id": "SORBI_004G238600", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 214, "end": 456, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 515, "end": 663, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 95, 229, 250, 276, 313, 328, 386 ] }, { "node_id": 4737577, "distance_to_parent": 0, "left_index": 293, "right_index": 298, "taxon_id": 4577, "taxon_name": "Zea mays", "node_type": "duplication", "bootstrap": 77, "duplication_confidence_score": 1, "children": [ { "node_id": 425831, "distance_to_parent": 0.027509, "left_index": 296, "right_index": 297, "protein_stable_id": "Zm00001d018033_P001", "gene_stable_id": "Zm00001d018033", "gene_description": "", "sequence": "MAGATSSSSVSLILILVASSSPRRSRGRVGIALRSYGYSGAELRLHWARRGSSRDGPAVVRAAAVPAGGEGEDAAATQAVYSTSPPKTATSAPKQNQSAAKQNGTVGSSSASKSPAPAVSESKAEPSAPVTKTETDASAKVEELKPSVDDAKPVESIGIPEPVDAKVDAAAATDAAASAADDTEDKEHGPLAGPNVMNVVVVASECAPFCKTGGLGDVVGALPKALARRGHRVMVVIPRYGEYAEARDLGVRRRYRVAGQDSEVTYFHSYIDGVDFVFIEAPPFRHRHNDIYGGERSDVLKRIILFCKAAVEVPWYAPCGGTVYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYARSVLVIHNIAHQGRGPVDDFVNFDLPEHYIDHFKLYDNIGGEHCNVFAAGLKMADQVVTVSNGYLWELRTSEGGWGLHDIINQNDWKLQGIVNGIDMSEWNPAVDVHLHSDEYTNYTFETLDTGKRQCKAALQRQLGLQVRDDVPLIGFIGRLDHQKGVDIIADAIHWIAGQDVQLVMLGTGRPDLEDMLRRCEAEHSDKVRAWVGFSVPLAHRITAGADVLLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFNDTGLGWTFDRAEANRMIDALSHCLNTFRNYKESWRGLEARGMAQDLSWDHAAVLYEDVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM148D6M36D4MD2M82D3M158D5M7D3M54D7M41D2M9D4M11D7MDM60D4M37DM2D2M14D4M3D3M7DM170DMDM126D5M459DM557D5MD6MD3M2D7M55D9M2D4M39D7M5D4M31D2M12D2MD2M64D3M6D4M9D8M21D4M84D7M11D9M13D3M24D5M16D13M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4577, "taxon_name": "Zea mays", "assembly": "AGPv4", "representative": { "id": "Zm00001d018033", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 198, "end": 440, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 76, 213, 234, 260, 297, 312, 370 ] }, { "node_id": 426030, "distance_to_parent": 0.022751, "left_index": 294, "right_index": 295, "protein_stable_id": "Zm00001d052263_P001", "gene_stable_id": "Zm00001d052263", "gene_description": "", "sequence": "MPGAISSSSSAFLLPVASSSPRRRRGSVGAALRSYGYSGAELRLHWARRGPPQDGAASVRAAAAPAGGESEEAAKSSSSSQAGAVQGSTAKTQAVDSASPPNPLTSAPKQSQSAAMQNGTSGGSSASTAAPVSGPKADHPSAPVTKREIDASAVKPEPAGDDARPVESIGIAEPVDAKADAAPATDAAASAPYDREDNEPGPLAGPNVMNVVVVASECAPFCKTGGLGDVVGALPKALARRGHRVMVVIPRYGEYAEARDLGVRRRYKVAGQDSEVTYFHSYIDGVDFVFVEAPPFRHRHNNIYGGERLDILKRMILFCKAAVEVPWYAPCGGTVYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYARSVLVIHNIAHQGRGPVDDFVNFDLPEHYIDHFKLYDNIGGDHSNVFAAGLKTADRVVTVSNGYMWELKTSEGGWGLHDIINQNDWKLQGIVNGIDMSEWNPAVDVHLHSDDYTNYTFETLDTGKRQCKAALQRQLGLQVRDDVPLIGFIGRLDHQKGVDIIADAIHWIAGQDVQLVMLGTGRADLEDMLRRFESEHSDKVRAWVGFSVPLAHRITAGADILLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFNDTGLGWTFDRAEANRMIDALSHCLTTYRNYKESWRGLQARGMAQDLSWDHAAVLYEDVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD2M82D3M158D5M7D3M54D7M41D2M9D4M11D7MDM60D4M37DM2D2M14D4M3D3M7DM170DMDM126D5M459D2M2DM342D4M8DM12D4M60D2M22DM50D2M45D5MD6MD3M2D7M55D9M2D4M39D2MD4M6D3M31D2M12D5M64D3M6D4M9D6M23D4M84D7M11D9M13D3M24D5M16D13M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4577, "taxon_name": "Zea mays", "assembly": "AGPv4", "representative": { "id": "Zm00001d052263", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 210, "end": 452, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": 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"432D3M92D3M164D2M466DM149D5M36D4MD10M50D4M20D3M158DM2D2M7D3M58DM43D2M9D4M11D7MDM60D4M39D3M16D2M3D3M7DM170D3M126D5M458D6M342D4M8DM12D4M60D2M22DM49D3M45D5MD6MD3M2D2M61D8M2D3M40D7M6D3M31D2M12D2MD2M64D3M6D4M9D8M21D4M84D5M14D8M13D3M24D5M21D8M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2D4M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 77586, "taxon_name": "Leersia perrieri", "assembly": "Lperr_V1.4", "representative": { "id": "LPERR02G26450", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 204, "end": 446, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 505, "end": 648, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 97, 219, 240, 266, 303, 318, 376 ] }, { "node_id": 4737543, "distance_to_parent": 0.006514, "left_index": 249, "right_index": 286, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 426049, "distance_to_parent": 0.03537, "left_index": 284, "right_index": 285, "protein_stable_id": "OB02G39280.1", "gene_stable_id": "OB02G39280", "gene_description": "Uncharacterized protein", "sequence": "MSGAIASSPAAFHLLAGSSSATSSSPRRRWGRVSGSVGSFGGTGLRLHWARPGLVRDGAVVCSASAAGGEDGAGKAKPAGSSKAVAVKGSTAKGDDVEDSVSSPKQNGALGSSPSKSDAPVSKPKVGPSVPASKAEADGNAQVAESKSAMGDKEDVGVTGPLDAKADPGVDVEAASSADDIENKESGPLAGVNVMNVIVVASECSPFCKTGGLGDVVGALPKALARRGHRVMVVIPRYGEYAEAKDLGVRRRYRVAGQDSEVNYFHAFIDGVDFVFLEAPPFRHRHNDIYGGERFDVLKRMILFCKAAVEVPWYAPCGGTVYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSVLVIHNIAHQGRGPVDDFATMDLPEHYIDHFRLYDPVGGEHSNVFAAGLKMADRVVTVSHGYLWELKTMDGGWGLHEIINNNDWKLHGIVNGIDMAEWNPEVDVHLQSDGYTNYTFETLDTGKRQCKAALQRQLGLQVRDDVPLIGFIGRLDHQKGVDIIGDAMPWIAGQDVQLVMLGTGRPDLEEMLRRFESEHHDKVRGWVGFSVPLAHRITAGADVILMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVPPFDPFADTGLGWTFDRAEANQMIDALGHCLNTYRNYKESFRALQARGMAQDLSWDHAAELYEDVLVKAKYQWRLCTGRTAFARTMAVARRGDGGMRCRAGMPPRGRSKVSNGASDPSAGQVSELAPESQVYPGGQEAAAMQGSGRALRASDRLLAAPTVAEAVESLVRAWRQVRVELLVPLLRGAVVMCVVLSVIVLAEKVFLGVVSSVVKVLRRRPSRLYRCDPVVEDKEAGSASFPMVLVQIPMYNEKEVYQLSIGAACRLTWPADRLIVQVLDDSTDAIVKELVRKECDKWGKKGINIKYETRKDREGYKAGNLKEGMRHGYVQGCEFVAMFDADFQPAPDFLLKTVPFLVHNPRLALVQTRWEFDDNAAADLLLSSPPALIRTPVLCMNANDCLLTRMQEMSMDYHFKVEQEAGSSLCNFFGYNGTAGVWRRQAIDESGGWEDRTTAEDMDLALRAGLLGWQFVYVGSIKVKSELPSTLKAYRSQQHRWSCGPALLFKKMFWGIIAAKRTASHERFLSRGADSVVGADLHPCSYYSSQFSWDSELLDHKDAHLTNSMCFRSIHLIVLWFLFENVMALHRLKATMIGFLEAGRANEWIVTQKLGNVHKLKSIVRVTKSCRFKDRFHCLELLIGGLLLISACYDYLYRDDSFYIFVLPQSIMYFLFCPSRLCILQLDLNSWVSVSLVRSRQSKSKTCSGTRYCSPIFYRVDKGKFYSYTLHSLKGGRRRRRQVRASAQGGSTAGGSGELGRGRGVATAIHIAINHIDEQLPTSCRLLHLPTCLHAVELVHHARSILADTTRHHMELGAAVKIAGEAAVLFWSRRFSVRIDNHIVVDPVFLAVIEQQNHSEMQLCLT", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD3M57D4M20D3M158D5M7D3M54D5M43D2M9D4M11D7MDM60D4M39D3M16D2M3D3M7DM170D3M126D5M458D5M345D2M8DM12D4M60D2M22DM49D3M45D5MD6M72D5M2D3M40D7M6D3M31D2M12D2MD2M64D3M6D4M9D8M21D4M84D5M14D8M13D3M24D5M16D3MD9M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMD78MD78M2D33M8D75MD2M47D31M46D6M62D18M8D86M11D2M171DM9D3M18D31M29D13M15D16M3D6M16D3M6DM2D7M5D6M49D15M20D6M14D6M3D5M2DM132D8M172D8M2D141M4D4MD16MD30M16D4M4D12M2D6M33D9M16D2M9D10M12D8M5D", "taxon_id": 4533, "taxon_name": "Oryza brachyantha", "assembly": "Oryza_brachyantha.v1.4b", "representative": { "id": "OB02G39280", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 196, "end": 438, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR029044", "root": 29044, "start": 850, "end": 1124, "name": "Nucleotide-diphossugar_trans", "description": "Nucleotide-diphospho-sugar transferases" } ], "exon_junctions": [ 93, 211, 232, 258, 295, 310, 368, 612, 686, 734, 757, 865, 898, 983, 1006, 1043, 1088, 1126, 1162, 1241, 1317, 1342 ] }, { "node_id": 4737545, "distance_to_parent": 0.010209, "left_index": 250, "right_index": 283, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 99, "children": [ { "node_id": 425931, "distance_to_parent": 0.006172, "left_index": 281, "right_index": 282, "protein_stable_id": "OPUNC02G29850.1", "gene_stable_id": "OPUNC02G29850", "sequence": "MSGAIASSPAASLFLAGSSSSPRRRRSRVSGGAVSAYGGTGLRLHWARRGLVRDGAVVCSASAAGGEDGVAKAKSAGSSKAVAVQGSTAKADDVEDSVSSPKSVKPAVAEQNRALGSNGSKSDAPVSKPKVEPSVPASKAEADGNAQVAESKAALDKKEDVGVAEPLEAKVDAGGDAGATSSADDSENKESGPLAGANVMNVIVVASECSPFCKTGGLGDVVGALPKALARRGHRVMVVIPRYGEYAEAKDLGVRKRYRVAGQDSEVSYFHAFIDGVDFVFLEAPPFRHRHNNIYGGERFDVLKRMILFCKAAVEVPWFAPCGGSIYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSVLVIHNIAHQGRGPVDDFATMDLPEHYIDHFRLYDPVGGEHSNVFAAGLKMADRVVTVSHGYLWEIKTMDGGWGLHEIINHNDWKLQGIVNGIDMAEWNPEVDVHLQSDGYTNYTFETLDTGKKQCKAALQRQLGLQVRDDMPLIGFIGRLDHQKGVDIIGDAMPWIAGQDVQLVMLGTGRPDLEEMLRRFESEHNDKVRGWVGFSVQLAHRITAGADVLLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFAGTGLGWTFDRAEANRMIDALGHCLNTYRNYKESWRGLQARGMAQDLSWDHAAELYEDVLIKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD3M81D3M158D5M7D4M53D5M43D2M9D4M11D7MDM60D4M39D3M16D2M3D3M7DM170D3M126D5M458D5M345D2M8DM12D4M60D2M22DM49D3M45D5MD6MD3M2D2M61D8M2D3M40D7M6D3M31D2M12D2MD2M64D3M6D4M9D8M21D4M84D5M14D8M13D3M24D5M16D3MD9M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4537, "taxon_name": "Oryza punctata", "assembly": "AVCL00000000", "representative": { "id": "OPUNC02G29850", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 201, "end": 443, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 502, "end": 646, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 90, 216, 237, 263, 300, 315, 373 ] }, { "node_id": 4737546, "distance_to_parent": 0.004966, "left_index": 251, "right_index": 280, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 85, "children": [ { "node_id": 425713, "distance_to_parent": 0.008306, "left_index": 278, "right_index": 279, "protein_stable_id": "KN539373.1_FGP011", "gene_stable_id": "KN539373.1_FG011", "sequence": "MTLQIEAPQADDVEDSVSSPKSVKPAVAKQNGAVVSRAPKSDAPVSKPKVDPSIPASKAEADGNAQVAESKAALDKKEDVGVAEPLEAKADAGGDAGAASSADDSENKESGPLAGPNVMNIIVVASECSPFCKTGGLGDVVGALPKALARRGHRVMVVIPRYGEYAEAKDLGVRKRYRVAGQDSEVNYFHAFIDGVDFVFLEAPPFRHRHNDIYGGERFDVLKRMILFCKAAVEIRSPPCHEWATQVPWFAPCGGSIYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSVLVIHNIAHQGRGPVDDFATMDLPEHYIDHFRLYDPVGGEHSNVFAAGLKMADRVVTVSHGYLWEIKTMDGGWGLHEIINHNDWKLQGIVNGIDMAEWNPEVDEHLQSDGYANYTFETLDTGKKQCKAALQRQLGLQVRDDVPLIGFIGRLDHQKGVDIIGDAMPWIAGQDVQVVMLGTGRPDLEEMLRRFESEHNGKVRGWVGFSVQLAHRITAGADVLLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFADTGLGWTFDRAEANRMIDALGHCLNTYRDYKESWRGLQARGMAQDLSWDHAAELYEDVLVKAKYQCTSVLDFLSPTPRGTSPVHDRRLHAGDLALRAGGDRLLVADTVAAVVESLVQAWRQVRMELVVPLLRGAVVACMAMSVIVLAEKVFLGVVSAVVKLLRRRPARLHKCDPVVVEDDDEAGRASFPMVLVQIPMYNEKEDSFTGVTLAPPDKNSEQCRLTWPADRLIVQVLDDSTDAIVKELVRKECERWGKKGINVKYETRKDRAGYKAGNLREGMRRGYVQGCEFVAMFDADFQPPPDFLLKTVPFLVHNPRLALVQTRWEFGKKVDYAATALTMWTPCVILLFFLPHITNVLARLTWPADRLIVQVLDDSTDAIVKELVRKECERWGKKGINVKYETRKDRAGYKAGNLREGMRRGYVQGCEFVAMFDADFQPPPDFLLKTVPFLVHNPRLALVQTRWEFVNANDCLLTRMQEMSMDYHFKVEQEAGSSLCNFFGYNGTAGVWRRQVIDESGGWEDRTTAEDMDLALRAGLLGWEFVYVGSIKVKSELPSTLKAYRSQQHRWSCGPALLFKKMFWEILAAKKVSVWKKLYMTYNFFIARRIISTFFTFFFFSILLPMKVFFPEVQIPLWELILIPTAIILLHSVGTPSYYDQKDGTSHELHVLQNVMALHRLKATLIGFFEAGRANEWIVTQKLGNIQKLKSIVRVTKNCRFKDRRNAAAIEGFDKL", 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}, { "id": "IPR001296", "root": 1296, "start": 513, "end": 657, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 101, 227, 248, 274, 311, 326, 384 ] }, { "node_id": 425786, "distance_to_parent": 0.00083, "left_index": 261, "right_index": 262, "protein_stable_id": "BGIOSGA005631-PA", "gene_stable_id": "BGIOSGA005631", "gene_description": "Soluble starch synthase II-2", "sequence": 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"432D3M92D3M164D2M466DM149D5M36D4MD3M60DM20D3M158D5M7D4M53D5M43D2M9D4M11D7MDM60D4M39D3M16D2M3D3M7DM170D3M126D5M454DM2D6M345D2M8DM12D4M60D2M22DM49D3M45D5MD6MD3M2D2M61D8M2D3M40D7M6D3M31D2M12D2MD2M64D3M6D4M9D8M21D4M84D5M14D8M13D3M24D5M16D3MD9M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 39946, "taxon_name": "Oryza sativa Indica Group", "assembly": "ASM465v1", "representative": { "id": "BGIOSGA005631", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 204, "end": 446, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 505, "end": 649, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 93, 219, 240, 266, 303, 318, 376 ] } ], "representative": { "id": "BGIOSGA005631", "score": -99.99917 } }, { "node_id": 4737554, "distance_to_parent": 0, "left_index": 254, "right_index": 259, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 40, "children": [ { "node_id": 425689, "distance_to_parent": 0.000904, "left_index": 257, "right_index": 258, "protein_stable_id": "OBART02G32300.1", "gene_stable_id": "OBART02G32300", "sequence": "MSGAIASSPAATLFLAGSSSSSPRRRRSRVSGVWWHSYGGTGLRLHWERRGLVRDGAVVCSASAAGGEDGVAKAKAKSAGSSKAVAVQGSTAKADHVEDSVSSPKSVKPAVAKQNGAVVSRATKSDAPVSKPKVDPSVPASKAEADGNAQAVESKAALDKKEDVGVAEPLEAKADAGGDAGAVSSADDSENKESGPLAGPNVMNVIVVASECSPFCKTGGLGDVVGALPKALARRGHRVMVVIPRYGEYAEAKDLGVRKRYRVAGQDSEVSYFHAFIDGVDFVFLEAPPFRHRHNDIYGGERFDVLKRMILFCKAAVEVPWFAPCGGSIYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSVLVIHNIAHQGRGPVDDFATMDLPEHYIDHFRLYDPVGGEHSNVFAAGLKMADRAVTVSHGYLWEIKTMDGGWGLHEIINHNDWKLQGIVNGIDMAEWNPEVDEHLQSDGYANYTFETLDTGKKQCKEALQRQLGLQDVQVVMLGTGRPDLEEMLRRFESEHNDKVRGWVGFSVQLAHRITAGADVLLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFADTGLGWTFDRAEANRMIDALGHCLNTYRNYKESWRGLQARGMAQDLSWDHAAELYEDVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD3M60DM20D3M158D5M7D4M53D5M43D2M9D4M11D7MDM60D4M39D3M16D2M3D3M7DM170D3M126D5M454DM2D6M345D2M8DM12D4M60D2M22DM49D3M45D5MD6MD3M2D2M61D8M2D3M40D7M6D3M31D2M12D2MD2M64D3M6D4M9D8M21D4M84D5M14D8M13D3M24D5M16D3MD9M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D2M207D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 65489, "taxon_name": "Oryza barthii", "assembly": "O.barthii_v1", "representative": { "id": "OBART02G32300", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 204, "end": 446, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 501, "end": 616, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 93, 219, 240, 266, 303, 318, 376, 503 ] }, { "node_id": 425770, "distance_to_parent": 0.000829, "left_index": 255, "right_index": 256, "protein_stable_id": "ORGLA02G0278400.1", "gene_stable_id": "ORGLA02G0278400", "gene_description": "Uncharacterized protein", "sequence": "MSGAIASSPAATLFLAGSSSSSPRRRRSRVSGVWWHSYGGTGLRLHWERRGLVRDGAVVCSASAAGGEDGVAKAKAKSAGSSKAVAVQGSTAKADHVEDSVSSPKSVKPAVAKQNGAVVSRATKSDAPVSKPKVDPSVPASKAEADGNAQAVESKAALDKKEDVGVAEPLEAKADAGGDAGAVSSADDSENKESGPLAGPNVMNVIVVASECSPFCKTGGLGDVVGALPKALARRGHRVMVVIPRYGEYAEAKDLGVRKRYRVAGQDSEVSYFHAFIDGVDFVFLEAPPFRHRHNDIYGGERFDVLKRMILFCKAAVEVPWFAPCGGSIYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSVLVIHNIAHQGRGPVDDFATMDLPEHYIDHFRLYDPVGGEHSNVFAAGLKMADRAVTVSHGYLWEIKTMDGGWGLHEIINHNDWKLQGIVNGIDMAEWNPEVDEHLQSDGYANYTFETLDTGKKQCKEALQRQLGLQVRDDVPLIGFIGRLDHQKGVDIIGDAMPWIAGQDVQVVMLGTGRPDLEEMLRRFESEHNDKVRGWVGFSVQLAHRITAGADVLLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFADTGLGWTFDRAEANRMIDALGHCLNTYRNYKESWRGLQARGMAQDLSWDHAAELYEDVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD3M60DM20D3M158D5M7D4M53D5M43D2M9D4M11D7MDM60D4M39D3M16D2M3D3M7DM170D3M126D5M454DM2D6M345D2M8DM12D4M60D2M22DM49D3M45D5MD6MD3M2D2M61D8M2D3M40D7M6D3M31D2M12D2MD2M64D3M6D4M9D8M21D4M84D5M14D8M13D3M24D5M16D3MD9M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4538, "taxon_name": "Oryza glaberrima", "assembly": "AGI1.1", "representative": { "id": "ORGLA02G0278400", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 204, "end": 446, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 505, "end": 649, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 93, 219, 240, 266, 303, 318, 376 ] } ], "representative": { "id": "ORGLA02G0278400", "score": 0.000829 } } ], "representative": { "id": "BGIOSGA005631", "score": -99.99917 } } ], "representative": { "id": "BGIOSGA005631", "score": -99.99917 } } ], "representative": { "id": "BGIOSGA005631", "score": -99.99571300000001 } } ], "representative": { "id": "BGIOSGA005631", "score": -99.99074700000001 } } ], "representative": { "id": "BGIOSGA005631", "score": -99.98053800000001 } } ], "representative": { "id": "BGIOSGA005631", "score": -99.97402400000001 } }, { "node_id": 4737569, "distance_to_parent": 0.025964, "left_index": 230, "right_index": 247, "taxon_id": 147368, "taxon_name": "Pooideae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 426005, "distance_to_parent": 0.058782, "left_index": 245, "right_index": 246, "protein_stable_id": "BRADI3G59440.1", "gene_stable_id": "BRADI3G59440", "sequence": "MSGAVASSSAAFLLLVANSSSSLRRRRSRVSTAVRSYGAAGTRLHWARRGFTWDGAVLCAASAAAGGEEGAAAGESSKGVSVQRGKVKAARNKDPASSPKAATSALKQDSSVAKQNGAAVSRDESGARVAESTAASGYWKDVVVAEPVEAKVDAAGDAEVATSAADDSENKGSYVPLAGPNVMNVVVVASECAPFCKTGGLGDVVGALPKALARRGHRVMVVIPKYGDYAEACDLGVRKHYKVAGQESEVTYFHSYIDGVDFVFLEAPPFRHLHNDIYGGKRTDVLKRMILFCKAAVEVPWYAPCGGVVYGDGNLVFIANDWHTALLPVYLKAYYRDNALMQYARSVLVIHNIAHQGRGPVEDFFDMDLPGHYIDHFKLYDPTGGEHNNVFAAGLKMADRVVTVSHGYMWELKTIEGGWGLHDIINQNDWKLHGIVNGIDTAEWNPEVDTHLHSDDYTNYTFETLDTGKRQCKAALQRELGLQVRDDVPVIGFIGRLDRQKGVDLIAEAMPWITQQDVQLVMLGTGRADLEDMLRRFEGEHRDKVRGWVGFSVKMAHRITAGADVLLMPSLFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFGGTGLGWTFDRADAGRMIDALGHCLNTYWNYKESWRGLQQRGMSQDLSWDHAAELYEDVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD3M80D4M158D5M7D3M54D5M43D2M9D4M11D7MDM60D4M39D3M15D3M3D3M7DM170D3M126D5M459D5M354DM12D4M60D2M72D3M45D5MD6MD3M2D7M55D9M58D3M136D8M21D4M84D5M14D8M13D3M24D5M16D13M5D4M64DM8DM4D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 15368, "taxon_name": "Brachypodium distachyon", "assembly": "v1.0", "representative": { "id": "BRADI3G59440", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 184, "end": 426, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 88, 199, 220, 246, 283, 298, 356 ] }, { "node_id": 4737571, "distance_to_parent": 0.031436, "left_index": 231, "right_index": 244, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 96, "children": [ { "node_id": 425760, "distance_to_parent": 0.03001, "left_index": 242, "right_index": 243, "protein_stable_id": "MLOC_15538.1", "gene_stable_id": "MLOC_15538", "gene_description": "Uncharacterized protein", "sequence": "MNAMFICCEHVQVPWYAPCGGTIYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSVLVIHNIAHQGRGPVDDFNMMDLPEHYIDHFKLYDPLCGEHNNVFAAGLKMADRVVTVSHGYMWELKTMEGGWGLHDIINQNDWKLDGIVNGIDTAEWNPAVDVHLHSDDYTNYTRDTLDTGKRQCKAALQRELGLQVRDDVPLIGFIGRLDHQKGVDIIAEAMPWITQQDVQLVMLGTGRPDLEDMLRRFEGEHRDKVRGWVGFSVRMAHRITAGADILLMPSLFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFGGTGLGWTFDRADAGRMIDALGHCLNTYWNYKESWRGLQVRGMSQDLSWDHAAELYENVLVKAKYQW", "cigar": "4325D6M470D6M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 112509, "taxon_name": "Hordeum vulgare subsp. vulgare", "assembly": "ASM32608v1", "representative": { "id": "MLOC_15538", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 30, "end": 140, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 70 ] }, { "node_id": 4737573, "distance_to_parent": 0.002749, "left_index": 232, "right_index": 241, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 61, "children": [ { "node_id": 426066, "distance_to_parent": 0.041523, "left_index": 239, "right_index": 240, "protein_stable_id": "TRIAE_CS42_6AL_TGACv1_471669_AA1512520.1", "gene_stable_id": "TRIAE_CS42_6AL_TGACv1_471669_AA1512520", "sequence": "MLGHIASSSAAFLLLVASSSSSRRWRSSSPRSFGAAGTRLHWERRGFSRDGSVPCRRVSAAAAVAGGEEGAGKAIAGEGSRQAASGQRGKLEAAENEDAVSQKSVASAPRPDSTVAEQHWAAGSRSEVDPSAPVSAAASGYWKDVVVAEQVGAKVDAGGDAAKVWSSPVDSENMGSAPLAGPNVMNVIVVASECAPFCKTGGLGDVVGALPKALARRGHRVMVVIPKYGDYGEARDLGVRKRYKVAGQDSEVSYFHSYIDGVDFVFLEAPPFRHRHNDIYGGERPDVLKRMILFCKAAVEVPWYAPCGGTIYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSVLVIHNIAHQGRGPVDDFNIMDLPEHYMDHFKLYDPLGGQHNNVFAAGLKMADRVVTVSHGYMWELKTMEGGWGLHDIINQNDWKLDGIVNGIDTAEWNPAVDVHLHSDDYTNYTRDTLDIGKRQCKAALQRELGLQVRDDVPLIGFIGRLDHQKGVDIIAAAMPWIAQQDVQLVMLGTGRPDLEDMLRRFEGEHRDKVRGWVGFSVRMAHRITAGADVLLMPSLFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFGGTGLGWTFDRADAGRMIDALGHCLNTYWNYKEKLEGPAGPRHVAGPQLGPRRRALRERPRQGQVPVVMRLMLTPLLQRMHVLRGQPEVVPTIAITGAPE", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD3M57DM24D2M138DM23DM7D3M54D5M43D2M9D4M11D7MDM60D4M39D3M14D4M3D3M7D4M167D3M126D5M459D5M342D4M8DM12D4M60D2M22DM50D2M45D5MD4MDMD3M2D7M55D9M2D2M56DM31D2M12D2MD2M64D3M6D3M127D5M14D8M13D3M24D5M16D13M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D8M8D9M26D8M10D3M3D6M2D9M4DM8DM16DM3DM4D3M8D4MD4M3DM7DM6DM23DM7D3M184DM13DM1745D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_6AL_TGACv1_471669_AA1512520", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 186, "end": 428, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 92, 201, 222, 248, 285, 300, 358, 643 ] }, { "node_id": 4737574, "distance_to_parent": 0.00418, "left_index": 233, "right_index": 238, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 62, "children": [ { "node_id": 425975, "distance_to_parent": 0.018295, "left_index": 236, "right_index": 237, "protein_stable_id": "TRIAE_CS42_6BL_TGACv1_501591_AA1619110.1", "gene_stable_id": "TRIAE_CS42_6BL_TGACv1_501591_AA1619110", "sequence": "MSGYIASSSAAFLLLVASSSCSSSSPRRWRSSSPRSFAAAGTRLHWERRGFSRDGPVPCRSPCAAAGGEDGAAAGESSKEGVAGLRGKLKAAENEDPVSQKSVASAPRLDSSVAEQNGAAATRSKADPSAPVSAAASGYWKDVVVAEQVGTKVDTGGDAAEVSRSPVDSENKGSAPLAGPNVMNVIVVASECAPFCKTGGLGDVVGALPKALARRGHRVMVVIPKYGDYAEARDLGVRKRYKVAGQDSEVSYFHSYIDGVDFVFLEAPPFRHRHNDIYGGERPDVLKRMILFCKAAVEVPWYAPCGGTIYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSVLVIHNIAHQGRGPVDDFNIMDLPDHYMGHFKLHDPLGGEHNNVFAAGLKMADRVVTVSHGYMWELKTVEGGWGLHDIINQNDWKLDGIVNGIDTAEWNPAVDVHLHSDDYTNYTRDTLDIGKRQCKAALQRELGLQVRDDVPLIGFIGRLDHQKGVDIIAAAMPWITQQDVQLVMLGTGRPDLEDMLRRFEGEHRDKVRGWVGFSVRMAHRITAGADVLLMPSLFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFGGTGLGWTFDRADAGRMIDALGHCLNTYWNYKESWRGLQVRGMSQDLSWDHAAELYENVLVKAKYQW", "cigar": "432D3M92D3M164D2M466DM149D5M36D4MD3M57D4M20D3M138DM23DM7D3M54D5M43D2M9D4M11D7MDM60D4M39D3M14D4M3D3M7DM170D3M126D5M459D5M43DM310DM12D4M60D3M72D2M45D5MD5M2D3M2D7M55D9M58D3M31D2M12D2MD2M64D3M6D3M127D5M14D8M13D3M24D5M16D13M5D4M64DM13D4M3D2M428DM81D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D10M8D8M39D2M2D6MDM33D2M5D4M2D7M3D13M7D2M5D10M18D15M12D2M16D3M10D2M6D3M24D3M7D6MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18DM9D3M3D13M6D16MD5M6D10M7D14MD11M17D6M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M17D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6DM23DM7D3M184DM13DMDM1743D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_6BL_TGACv1_501591_AA1619110", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 184, "end": 426, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" 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"MEASVAMAMLECTASLPSTLCTSSSGKISSSVSGTGLACFPMQGRSWAKLKQCHGGMWKGAHRRTVITRAQVGKKGPAGGGGRKDRGVMLDESKKLLAMQKELLDKIEERQKLLSSSGQPSASIGVDQLSEPKPSISQSTVEVSEASSSTQTAPSETSDRSGSAVAQPYSPGISMPDGQQKESTDFHSDHGRVGTAGNVSEMPQPAAVEAEAAAPSEAEKPPPLAGPNVMNVIVVAAECAPWSKTGGLGDVVGALPKALARRGHRVMVVAPRYSNYNDAWETGIRRIYNVSGQDMEVGYFHCFLDGVDYVFIDNPIFHAYANNIYGGSREDVLNRMILLSKAAVETPWHVPCGGVCYGDGNLVFIANDWHTALVPVYLQAHYRDNGYMKFARSVLVIHNMAHQGRGPLKDYGKLGLPDHYISKFRLYDPQGGEHNNIFMAGLITAHRIVTVSHGYAWEVQTPEGGWGLDGVIRDHNWKLRGVVNGIDDKEWNPDLDVHLKSDGYTNYDIETLDSGKAACKAALQKELGFPVRPEVPLLGFIGRLDSQKGIDIIAQAMPWLVTQDIQLVMLGTGRKDYEDMLRHFEGAYRDKVRGWVGFSVQTAHRITAGVDILLMPSRFEPCGLNQLYAMRYGTVPVVHAVGGLKDTVQQFNPFNESGLGWTFDGLNADAFIHALGNAMWTYLDFKTSWKGIQQRGMSQNLSWDHAAQQYEEVLLAAKYTW", "cigar": 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"taxon_id": 3193, "taxon_name": "Embryophyta", "node_type": "speciation", "bootstrap": 9, "children": [ { "node_id": 4737668, "distance_to_parent": 0.242242, "left_index": 20, "right_index": 197, "taxon_id": 58023, "taxon_name": "Tracheophyta", "node_type": "speciation", "bootstrap": 32, "children": [ { "node_id": 425922, "distance_to_parent": 0.236505, "left_index": 195, "right_index": 196, "protein_stable_id": "EFJ35243", "gene_stable_id": "SELMODRAFT_80176", "gene_description": "Starch synthase", "sequence": 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386, 428, 464, 483, 496 ] }, { "node_id": 4737669, "distance_to_parent": 0.129996, "left_index": 21, "right_index": 194, "taxon_id": 3398, "taxon_name": "Magnoliophyta", "node_type": "speciation", "bootstrap": 1, "children": [ { "node_id": 425698, "distance_to_parent": 0.173373, "left_index": 192, "right_index": 193, "protein_stable_id": "ERN14077", "gene_stable_id": "AMTR_s00021p00224370", "gene_description": "Glycogen/starch synthases, ADP-glucose type", "sequence": "MEIPQVPVALSAARLWRSPTNLAVLIPNLGFVKVVSPNKFQRCNGVFLNGSDRRLMGFCSLKGNSGFVGERDLEGVLLERNGLEHSSESDKLGPDDSNVDSSSDRKQSVSGEEGVKTKPKITQNIVFVASEANPYAKTGGLGDVVGSLPVVLARRGHRVMVVIPRYMNGITDKVYGNALDTKLRIKVSCFGGDHEVAFFHEYKEGVDWVFVNHPSYHRPGNPYGDNFGAFGDNQFRFTLFCYAACEAPLVLPLGGYIYGERCIFLVNDWHASLVPILLAAKYRPYGVYKHARSVLVIHNLAHQGVEPATTFGNLGLPPEWYGALEWVFPTWARKHALDRGEAVNPLKGGIVTADRIVTVSQGYAWEITTAEGGTGLDELLRSRKSVINGITNGIDIDEWNPVSDRHISCQYSVIDLSGKAECKLALQKELGLAVRPDVPLVGFIGRLDYQKGVDLIRSSLDELMQDDVQFIMLGSGDPDIEQWMRTAECNYRDKFRGWVGFSVPVSHRVTAGCDILLMPSRFEPCGLNQLYAMRYGTVPVVHGTGGLKDTVENFDPFANGGEGRGTGWSFSPLSKEAMLGTLRIATQTYREYKNSWEGIMRRGMERDYTWEKAAAQYEQVFQWAMMDPPYCNMT", "cigar": "432D4M91DM85D3M17D2M57D5M463D3M149D5M36D4MD5M38D4M37D7M139D2M8D10M75D5MDM29D3M89D8M34D4MD3M14D8M181D2M586D3M645DM290DM45DM20D7M17D7M17D6M12D3M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M27D2M936D", "taxon_id": 13333, "taxon_name": "Amborella trichopoda", "assembly": "AMTR1.0", "representative": { "id": "AMTR_s00021p00224370", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 124, "end": 381, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 437, "end": 582, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 90, 208, 234, 276, 303, 361, 389, 419, 440, 470, 512, 548, 567, 580 ] }, { "node_id": 4737670, "distance_to_parent": 0.064565, "left_index": 22, "right_index": 191, "taxon_id": 3398, "taxon_name": "Magnoliophyta", "node_type": "speciation", "bootstrap": 3, "children": [ { "node_id": 4737744, "distance_to_parent": 0.0673, "left_index": 125, "right_index": 190, "taxon_id": 1437201, "taxon_name": "Pentapetalae", "node_type": "speciation", "bootstrap": 29, "children": [ { "node_id": 426048, "distance_to_parent": 0.204256, "left_index": 188, "right_index": 189, "protein_stable_id": "KMT15999", "gene_stable_id": "BVRB_3g051810", "gene_description": "hypothetical protein", "sequence": 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"432D4M91D4M81D4M17D2M57D5M463D3M240D2M37D4M238D4MDM29D3M89D8M34D4MD3M14D8M7D8M22DM143D2M586D9M360D2M5D3M61D2M21D3M176D7M112D6M58D2M112D8M2D21M14D10M11D8M17D7M2D27M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12MD13M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D11M10D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D2M966D", "taxon_id": 3555, "taxon_name": "Beta vulgaris subsp. vulgaris", "assembly": "RefBeet-1.2.2", "representative": { "id": "BVRB_3g051810", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 196, "end": 453, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 508, "end": 661, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 108, 280, 306, 348, 375, 433, 461, 491, 512, 542, 584, 620, 641, 654 ] }, { "node_id": 4737745, "distance_to_parent": 0.02652, "left_index": 126, "right_index": 187, "taxon_id": 1437201, "taxon_name": "Pentapetalae", "node_type": "speciation", "bootstrap": 12, "children": [ { "node_id": 4737747, "distance_to_parent": 0.188141, "left_index": 181, "right_index": 186, "taxon_id": 4107, "taxon_name": "Solanum", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425905, "distance_to_parent": 0.016102, "left_index": 184, "right_index": 185, "protein_stable_id": "Solyc03g083090.2.1", "gene_stable_id": "Solyc03g083090.2", "sequence": "MGSLRTPTNLSNKSCLCVSGRVVKGLRVERQVGLGFSWLLKGRRNRKVQSLCVTSSVSDGSSIAENKKVSEGLLLGPERDGSGSVVGFQLIPHSVAGDATMVESHDIVANDRDDLREDAEEMEETPIKLTFNIIFVTAEAAPYSKTGGLGDVCGSLPMALAARGHRVMVVSPRYLNGGPSDEKYANAVDLDVRATVHCFGDAQEVAFYHEYRAGVDWVFVDHSSYRRPGTPYGDIYGAFGDNQFRFTLLSHAACEAPLVLPLGGFTYGEKCLFLANDWHASLVPLLLAAKYRPYGVYKDARSIVAIHNIAHQGVEPAATYNNLGLPPQWYGALEWIFPTWARAHALDTGETVNVLKGAISVADRILTVSQGYSWEITTPEGGYGLHELLSSRQSVLNGITNGIDVNDWNPSTDEHIASHYSINDLSGKAQCKTDLQKELGLPIRPDCPLIGFIGRLDYQKGVDIILSAIPELLQKDVQFVMLGSGEKQYEDWMRHTENLFKDKFRAWVGFNVPVSHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVVHSTGGLRDTVKDFNPYAQEGKGEGTGWTFSPLTSEKLLDTLKLAIGTYTEHKSSWEGLMKRGMGRDYSWENAAIQYEQVFTWAFMDPPYVR", "cigar": "432D4M91D2M84D3M17D2M57D5M463D3M149D5M36D4MDM42DM284D2MDM29D3M89D8M34D4MD3M14D7M182D2M586D8M83DMDM221DM124D2M21D3M176D7M112D6M58D2M112DM23D5M17D7M13D8M17D4M26D6M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12MD13M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 4081, "taxon_name": "Solanum lycopersicum", "assembly": "SL2.50", "representative": { "id": "Solyc03g083090.2", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 132, "end": 390, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 444, "end": 592, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 95, 217, 243, 285, 312, 370, 398, 428, 449, 479, 521, 557, 576, 589 ] }, { "node_id": 425710, "distance_to_parent": 0.013322, "left_index": 182, "right_index": 183, "protein_stable_id": "PGSC0003DMT400047731", "gene_stable_id": "PGSC0003DMG402018552", "gene_display_label": "SSI1", "gene_description": "Soluble starch synthase 1, chloroplastic/amyloplastic", "sequence": "MGSLQTPTNLSNKSCLCVSGRVVRGLRVERQVGLGFSWLLKGRRNRKVQSLCVTSSVSDGSSIAENKKVSEGLLLGAERDGSGSVVGFQLIPHSVAGDATMVESHDIVANDRDDLSEDTEEMEETPIKLTFNIIFVTAEAAPYSKTGGLGDVCGSLPMALAARGHRVMVVSPRYLNGGPSDEKYANAVDLDVRATVHCFGDAQEVAFYHEYRAGVDWVFVDHSSYCRPGTPYGDIYGAFGDNQFRFTLLSHAACEAPLVLPLGGFTYGEKCLFLANDWHAALVPLLLAAKYRPYGVYKDARSIVAIHNIAHQGVEPAVTYNNLGLPPQWYGAVEWIFPTWARAHALDTGETVNVLKGAIAVADRILTVSQGYSWEITTPEGGYGLHELLSSRQSVLNGITNGIDVNDWNPSTDEHIASHYSINDLSGKVQCKTDLQKELGLPIRPDCPLIGFIGRLDYQKGVDIILSAIPELMQNDVQVVMLGSGEKQYEDWMRHTENLFKDKFRAWVGFNVPVSHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPIVHSTGGLRDTVKDFNPYAQEGNGEGTGWTFSPLTSEKLLDTLKLAIGTYTEHKSSWEGLMKRGMGRDYSWENAAVQYEQVFTWAFIDPPYVR", "cigar": "432D4M91D2M84D3M17D2M57D5M463D3M149D5M36D4MDM42DM284D2MDM29D3M89D8M34D4MD3M14D7M182D2M586D8M83DMDM221DM124D2M21D3M176D7M112D6M58D2M112DM23D5M17D7M13D8M17D4M26D6M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12MD13M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 4113, "taxon_name": "Solanum tuberosum", "assembly": "SolTub_3.0", "representative": { "id": "PGSC0003DMG402018552", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 132, "end": 390, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 444, "end": 592, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 95, 217, 243, 285, 312, 370, 398, 428, 449, 479, 521, 557, 576, 589 ] } ], "representative": { "id": "PGSC0003DMG402018552", "score": -149.986678 } }, { "node_id": 4737752, "distance_to_parent": 0.01296, "left_index": 127, "right_index": 180, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "dubious", "bootstrap": 18, "duplication_confidence_score": 0, "children": [ { "node_id": 4737790, "distance_to_parent": 0.237575, "left_index": 158, "right_index": 179, "taxon_id": 3700, "taxon_name": "Brassicaceae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 4737800, "distance_to_parent": 0.039836, "left_index": 165, "right_index": 178, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "duplication", "bootstrap": 82, "duplication_confidence_score": 0.3333, "children": [ { "node_id": 4737802, "distance_to_parent": 0.015824, "left_index": 172, "right_index": 177, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425948, "distance_to_parent": 0, "left_index": 175, "right_index": 176, "protein_stable_id": "CDX88091", "gene_stable_id": "GSBRNA2T00147519001", "gene_display_label": "BnaA06g26820D", "sequence": "MASLQISGGSVRFVAGFNRTGCIRPICSLGFPHSRSRFSIGRPLLLRRASVSGESETDDITDAERDVSASSSASLLGFQLVPPGDQEIISTNTTKETTHQEETSDATDESEMADFGVPGNRAVEEGAAEVEYTSVKAEVINNLVFVTSEAAPYSKTGGLGDVCGSLPIALAGRGHRVMVISPRYLNGTSADKNYARAKDLGVRVTVHCFGGSQEVSFYHEYRDGVDWVFIDHQSYHRPGNPYGDSKGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKSLFLVNDWHAGLVPILLAAKYRPYGVYKDARSILIIHNLAHQGVEPAATYSNLGLPSEWYGAVGWVFPTWARTHALDTGEAVNVLKGAIVTSDRIITVSQGYAWEITTVEGGYGLQDLLSSRKSVINGITNGINIDEWDPSKDEHIPFHYSLDDYSNKVKCKMALQKELGLPIRPECPMIGFIGRLDYQKGIDLIQTAGPDLMVDDIQFVMLGSGDPKCESWMRSMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLRDTVENFNPYAEGGAGAGTGWVFSPLSKDSMVSALRLAAATYREYKESWEGLMRRGMSRNYSWENAAVQYEQVFQWVFMDPPYIN", "cigar": "432D4M91D4M163D3M463D2M153D2M36D4MDM42D4M37DM243D2MDM29D3M89D8M34D4MD3M14D2MD4M10D3M2DM22DM143D2M1049D3M176D8M107D2MD7M58D2M112DM23D7M14D9M12D8M17D12M9D14M6D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12MD13M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 3708, "taxon_name": "Brassica napus", "assembly": "AST_PRJEB5043_v1", "representative": { "id": "GSBRNA2T00147519001", "score": -50 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 143, "end": 400, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 455, "end": 604, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 84, 227, 295, 322, 380, 408, 438, 459, 489, 531, 567, 586, 599 ] }, { "node_id": 425879, "distance_to_parent": 0, "left_index": 173, "right_index": 174, "protein_stable_id": "Bra009747.1-P", "gene_stable_id": "Bra009747", "gene_display_label": "SSI1", "gene_description": "AT5G24300 (E=0.0) SSI1, SSI, ATSS1 | SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1); starch synthase/ transferase, transferring glycosyl groups ", "sequence": "MASLQISGGSVRFVAGFNRTGCIRPICSLGFPHSRSRFSIGRPLLLRRASVSGESETDDITDAERDVSASSSASLLGFQLVPPGDQEIISTNTTKETTHQEETSDATDESEMADFGVPGNRAVEEGAAEVEYTSVKAEVINNLVFVTSEAAPYSKTGGLGDVCGSLPIALAGRGHRVMVISPRYLNGTSADKNYARAKDLGVRVTVHCFGGSQEVSFYHEYRDGVDWVFIDHQSYHRPGNPYGDSKGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKSLFLVNDWHAGLVPILLAAKYRPYGVYKDARSILIIHNLAHQGVEPAATYSNLGLPSEWYGAVGWVFPTWARTHALDTGEAVNVLKGAIVTSDRIITVSQGYAWEITTVEGGYGLQDLLSSRKSVINGITNGINIDEWDPSKDEHIPFHYSLDDYSNKVKCKMALQKELGLPIRPECPMIGFIGRLDYQKGIDLIQTAGPDLMVDDIQFVMLGSGDPKCESWMRSMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLRDTVENFNPYAEGGAGAGTGWVFSPLSKDSMVSALRLAAATYREYKESWEGLMRRGMSRNYSWENAAVQYEQVFQWVFMDPPYIN", "cigar": "432D4M91D4M163D3M463D2M153D2M36D4MDM42D4M37DM243D2MDM29D3M89D8M34D4MD3M14D2MD4M10D3M2DM22DM143D2M1049D3M176D8M107D2MD7M58D2M112DM23D7M14D9M12D8M17D12M9D14M6D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12MD13M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 51351, "taxon_name": "Brassica rapa subsp. pekinensis", "assembly": "IVFCAASv1", "representative": { "id": "Bra009747", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 143, "end": 400, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 455, "end": 604, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 84, 227, 295, 322, 380, 408, 438, 459, 489, 531, 567, 586, 599 ] } ], "representative": { "id": "Bra009747", "score": -150 } }, { "node_id": 4737806, "distance_to_parent": 0.012278, "left_index": 166, "right_index": 171, "taxon_id": 3705, "taxon_name": "Brassica", "node_type": "speciation", "bootstrap": 82, "children": [ { "node_id": 426059, "distance_to_parent": 0.008634, "left_index": 169, "right_index": 170, "protein_stable_id": "Bo7g097020.1", "gene_stable_id": "Bo7g097020", "gene_display_label": "SSI1", "gene_description": "Glycogen/starch synthases, ADP-glucose type", "sequence": "MASLQISGGSVRFVAGFNRTGCIRPICSLGFPRSRRRISIGRPLLLRCSTLSGESETDEITDSDRDGSGASSASLLGFQLAPPGDQQIISTNTTKEATHQEENTDATDESEMADFGVPGNRAVEEGAAEIEYTTVKAEVINNLVFVTSEAAPYSKTGGLGDVCGSLPIALAGRGHRVMVISPRYLNGTSADKNYSRAKDLGVRVTVHCFGGSQEVSFYHEYRDGVDWVFIDHQSYHRPGNPYGDSKGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKSLFLVNDWHAGLVPILLAAKYRPYGVYKDARSILIIHNLAHQGVEPAASYSNLGLPSEWYGAVGWVFPTWARTHALDTGEAVNVLKGAIVTSDRIITVSQGYAWEITTVEGGYGLQDLLSSRKSVINGITNGINIDEWDPSKDEHIPFHYSLDDYSNKVKCKMALQKELGLPIRPECPMIGFIGRLDYQKGIDLIQTAGPDLMVDDIQFVMLGSGDPKCESWMRSMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLRDTVENFNPYAEGGAGTGTGWVFSPLSKDSMVSALRLAAATYREYKESWEGLVRRGMIRNYSWENAAVQYEQVFQWVFMDRPYIN", "cigar": "432D4M91D4M163D3M463D2M153D2M36D4MDM42D4M37DM243D2MDM29D3M89D8M34D4MD3M14D2MD4M10D3M2DM22DM143D2M1049D3M176D8M107D2MD7M58D2M112DM23D7M14D9M12D8M17D12M9D14M6D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12MD13M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 109376, "taxon_name": "Brassica oleracea var. oleracea", "assembly": "v2.1", "representative": { "id": "Bo7g097020", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 143, "end": 400, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 455, "end": 604, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 84, 227, 295, 322, 380, 408, 438, 459, 489, 531, 567, 586, 599 ] }, { "node_id": 425681, "distance_to_parent": 0.006618, "left_index": 167, "right_index": 168, "protein_stable_id": "CDX80428", "gene_stable_id": "GSBRNA2T00133501001", "gene_display_label": "BnaC07g30160D", "sequence": "MASLQISGGSVRFVAGFNRTGCIRPICSLGFPRSRRRISIGRPLLLRCSTLSGESETDEITDSDRDGSGASSASLLGFQLAPPGDQQIISTNTTKEATHQEENTDATDESEMADFGVPGNRAVEEGAAEIEYTTVKAEVINNLVFVTSEAAPYSKTGGLGDVCGSLPIALAGRGHRVMVISPRYLNGTSADKNYSRAKDLGVRVTVHCFGGSQEVSFYHEYRDGVDWVFIDHQSYHRPGNPYGDSKGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKSLFLVNDWHAGLVPILLAAKYRPYGVYKDARSILIIHNLAHQGVEPAASYSNLGLPSEWYGAVGWVFPTWARTHALDTGEAVNVLKGAIVTSDRIITVSQGYAWEITTVEGGYGLQDLLSSRKSVINGITNGINIDEWDPSKDEHIPFHYSLDDYSNKVKCKMALQKELGLPIRPECPMIGFIGRLDYQKGIDLIQTAGPDLMVDDIQFVMLGSGDPKCESWMRSMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLRDTVENFNPYAEGGAGAGTGWVFSPLSKDSMVSALRLSAATYREYKESWEGLMRRGMSRNYSWENAAVQYEQVFQWVFMDRPYIN", "cigar": "432D4M91D4M163D3M463D2M153D2M36D4MDM42D4M37DM243D2MDM29D3M89D8M34D4MD3M14D2MD4M10D3M2DM22DM143D2M1049D3M176D8M107D2MD7M58D2M112DM23D7M14D9M12D8M17D12M9D14M6D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12MD13M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 3708, "taxon_name": "Brassica napus", "assembly": "AST_PRJEB5043_v1", "representative": { "id": "GSBRNA2T00133501001", "score": -50 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 143, "end": 400, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 455, "end": 602, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 84, 227, 295, 322, 380, 408, 438, 459, 489, 531, 567, 586, 599 ] } ], "representative": { "id": "Bo7g097020", "score": -149.991366 } } ], "representative": { "id": "Bra009747", "score": -149.984176 } }, { "node_id": 4737791, "distance_to_parent": 0.036965, "left_index": 159, "right_index": 164, "taxon_id": 3701, "taxon_name": "Arabidopsis", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425848, "distance_to_parent": 0.019446, "left_index": 162, "right_index": 163, "protein_stable_id": "fgenesh2_kg.6__2423__AT5G24300.1", "gene_stable_id": "fgenesh2_kg.6__2423__AT5G24300.1", "gene_display_label": "SSI1", "gene_description": "Putative uncharacterized protein", "sequence": "MASLQISGSVKFEPLVGFNRIRYFRPIGSLGIPRFRRRFSIGRPLLLRRSSSFSGDKIGESVGDEKGFITDAERDGSGSVLGFQLTPTGDQEIFSTSTGEITHQEEKKEAIDETVMADFGVPGNRAVEEGAVEVGIPSGKAEVVNNLVFVTSEAAPYSKTGGLGDVCGSLPIALAGRGHRVMVVSPRYLNGTAADNNYARAKDLGIRITVNCFGGSQEVSFYHEYRDGVDWVFVDHKSYHRPGNPYGDSKGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKSLFLVNDWHAGLVPILLAAKYRPYGVYKDARSILIIHNLAHQGVEPAATYTNLGLPSEWYGAVGWVFPTWARTHALDTGEAVNVLKGAIVTSDRIITVSQGYAWEITTVEGGYGLQDLLSSRKSVINGITNGINVDEWNPSTDEHIPFHYSADDFSEKVKCKMALQKELGLPIRPECPMIGFIGRLDYQKGIDLIQTAGPDLMVDDIQFVMLGSGDPKYESWMRSMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVVHGTGGLRDTVENFNPYAEGGAGAGTGWVFTPLSKDSMVSALRLAAATYREYKESWEGLMRRGMTRNYSWENAAVQYEQVFQWVFMDPPYVS", "cigar": "432D4M91D3M164D3M463D3M151D3M36D4MDM42D4M37DM243D2MDM29D3M89D8M34D4MD3M14D7M10D6M22D2M141D4M1025D2M21D3M176D7M112D6M58D2M112DM23D7M14D2MD6M12D8M17D12M9D14M6D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12MD13M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 81972, "taxon_name": "Arabidopsis lyrata subsp. lyrata", "assembly": "v.1.0", "representative": { "id": "fgenesh2_kg.6__2423__AT5G24300.1", "score": -50 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 147, "end": 404, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 459, "end": 608, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 89, 231, 257, 299, 326, 384, 412, 442, 463, 493, 535, 571, 590, 603 ] }, { "node_id": 425895, "distance_to_parent": 0.014655, "left_index": 160, "right_index": 161, "protein_stable_id": "AT5G24300.1", "gene_stable_id": "AT5G24300", "gene_display_label": "SS1", "gene_description": "Starch synthase 1, chloroplastic/amyloplastic", "sequence": "MASLQISGSVKFEPFVGFNRIRHFRPIASLGFPRFRRRFSIGRSLLLRRSSSFSGDSRESDEERFITDAERDGSGSVLGFQLTPPGDQQTVSTSTGEITHHEEKKEAIDQIVMADFGVPGNRAVEEGAAEVGIPSGKAEVVNNLVFVTSEAAPYSKTGGLGDVCGSLPIALAGRGHRVMVISPRYLNGTAADKNYARAKDLGIRVTVNCFGGSQEVSFYHEYRDGVDWVFVDHKSYHRPGNPYGDSKGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKSLFLVNDWHAGLVPILLAAKYRPYGVYKDARSILIIHNLAHQGVEPAATYTNLGLPSEWYGAVGWVFPTWARTHALDTGEAVNVLKGAIVTSDRIITVSQGYAWEITTVEGGYGLQDLLSSRKSVINGITNGINVDEWNPSTDEHIPFHYSADDVSEKIKCKMALQKELGLPIRPECPMIGFIGRLDYQKGIDLIQTAGPDLMVDDIQFVMLGSGDPKYESWMRSMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVVHGTGGLRDTVENFNPYAEGGAGTGTGWVFTPLSKDSMVSALRLAAATYREYKQSWEGLMRRGMTRNYSWENAAVQYEQVFQWVFMDPPYVS", "cigar": "432D4M91D3M164D3M463D3M151D3M36D4MDM42D4M37DM243D2MDM29D3M89D8M34D4MD3M14D7M10D3MD2M22DM143D3M1025D2M21D3M176D7M112D6M58D2M112DM23D7M14D2MD6M12D8M17D12M9D14M6D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12MD13M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 3702, "taxon_name": "Arabidopsis thaliana", "assembly": "TAIR10", "representative": { "id": "AT5G24300", "score": -175 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 144, "end": 401, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 456, "end": 605, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 86, 228, 254, 296, 323, 381, 409, 439, 460, 490, 532, 568, 587, 600 ] } ], "representative": { "id": "AT5G24300", "score": -174.985345 } } ], "representative": { "id": "AT5G24300", "score": -174.94838 } }, { "node_id": 4737754, "distance_to_parent": 0.019531, "left_index": 128, "right_index": 157, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "speciation", "bootstrap": 23, "children": [ { "node_id": 425864, "distance_to_parent": 0.124801, "left_index": 155, "right_index": 156, "protein_stable_id": "VIT_16s0098g01780.t01", "gene_stable_id": "VIT_16s0098g01780", "gene_display_label": "SSI1", "gene_description": "Putative uncharacterized protein", "sequence": "MESLQSPLVLSSKLLPNSLKKPVLEVGFACFFKQRRVIQSVSIKRSVVCCSRKGGGGGSQDGSSAMLVNTDKKDASDSVGFHLVPPPSGDNGVIDPHEKLSTQKEAETGNSEGEEERKTKVTYNIVFVTSESAPYSKTGGLGDVCGSLPIALAAHGHRVMVVSPRYQNGTCSDEIFSGASDLEHPIKVHCFGGVQEVSFFHEYRAGVDWVFVDHPSYHRPGNPYGDGYGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKCLFLVNDWHASLVPVLLAAKYRPHGVYKDARTVLVIHNLAHQGVEPAVTYDNLGLPPEWYGAVEWVFPTWARTHALDTGQAVNLLKGAIVTVDRILTVSKGYAWEVTTPEGGYGLHELLTSRKAVINGITNGIDVSEWDPSSDEHIPFHYSAEDLSGKVQCKIALQKELSLPIRPDCPLIGFIGRLDYQKGIDVIRLATPELMGEDVQLVMLGSGNPEDEEWMRVMESTYRDKFRGWVGFNVPISHRITASCDILLMPSRFEPCGLNQLYAMRYGAVPVVHGTGGLRDTVENFNPYAGGGSGEGTGWTFSPLSKDTMLAALRVAIRTYREHKPSWERLMKRGMEKDYTWDKAALEYEQVFKWAFIDPPYVS", "cigar": "432D4M91D2M84D3M17D2M57D2M660D3MDM42D4M37DM243D2MDM29D3M89D8M34D4MD3M14D2MD6M6D8M22DM143D2M963D2M61D2M21D3M176D7M112D6M58D3M111DM23D3M19D7M13D8M17D4M26D6M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12MD13M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 29760, "taxon_name": "Vitis vinifera", "assembly": "IGGP_12x", "representative": { "id": "VIT_16s0098g01780", "score": -50 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 124, "end": 382, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 435, "end": 586, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 89, 209, 235, 277, 304, 362, 390, 441, 471, 513, 549, 568, 581 ] }, { "node_id": 4737765, "distance_to_parent": 0.019328, "left_index": 129, "right_index": 154, "taxon_id": 71275, "taxon_name": "rosids", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 425849, "distance_to_parent": 0.112696, "left_index": 152, "right_index": 153, "protein_stable_id": "EOY23571", "gene_stable_id": "TCM_015424", "gene_description": "Glycogen/starch synthases isoform 2", "sequence": "MESLTLGRVLSCKLSTNISRKVCSFMPSKQLGFGHFLRRSFKNVKLTVVKSEESGNGGEFGGLADGSNSNAVEEEEEEEEEKKEDEKEKRGLMLGIDRDDSGSVIGLHLIPPSGDYEVIDSHEDVTTDTKEKDGEIEEEKPQTRITYNIVFVTAEAAPYSKSGGLGDVCGSLPVALAGRGHRVMVVSPRYLHGTPADKNIAGALDIDRRIKIYCFGGEQEVAFFHEYREGVDWVFVDHPSYHRPGNPYGDSHGAFGDNQFRFTLLCHAACEAPLVLPLGGYTYGEKCLFLVNDWHAGLVPVLLASKYHPFGVYKDARSILIIHNLAHQGVEPAATFKNLGLPSDWYGALEWVFPTWARTHALDTGEAVNILKGAIVTADRILTVSKGYAWEITTVEGGYGLHELLSSRRSVLNGIANGIDIAEWDPSSDEHIGFHYSADDLSGKVQCKTALQKELALPIRPECPLIGFIGRLDYQKGIDLIRWATPELMEDDVQFVMLGSGDPLYEDWMRAAETTYRDKFRGWVGFNIPISHRITAGCDILLMPSRFEPCGLNQLYAMRYATVPVVHATGGLRDTVENFNPYAGGGNGDGTGWTFSPLTKESMLEALRMAILTYREHKLTWEGLMRRGLQRDCTWESAAVQYEQVFEWASIDPPYIM", "cigar": "432D4M91D2M84D3M17D2M57D5M463D3M150D4M36D4MDM42DM287DM29D3M89D8M34D4MD3M14D2MD5M7D8M22DM143D3M584D9M83DMDM221DMD3M44D6M7D2M61D2M21D3M176D7M112D6M58D2M112DM23D3M19D7M13D8M17D4M26D5M6D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12MD13M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 3641, "taxon_name": "Theobroma cacao", "assembly": "Theobroma_cacao_20110822", "representative": { "id": "TCM_015424", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 148, "end": 406, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 460, "end": 611, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 114, 233, 259, 301, 328, 386, 414, 444, 465, 495, 537, 573, 592, 605 ] }, { "node_id": 4737768, "distance_to_parent": 0, "left_index": 130, "right_index": 151, "taxon_id": 91835, "taxon_name": "fabids", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 425744, "distance_to_parent": 0.116945, "left_index": 149, "right_index": 150, "protein_stable_id": "POPTR_0015s01470.1", "gene_stable_id": "POPTR_0015s01470", "gene_display_label": "POPTRDRAFT_1100713", "gene_description": "Glycogen/starch synthases, ADP-glucose type", "sequence": "MESLCIVGNGGVSTCQAFTRLDTTRVGLRPRAQLGFGCFVRERYKYGNLVIARSGRSEVGNSKDGNFAVENEKKEKRGGLILGPERDSSGSVIGFNLIPPSGMDISFTVLESHEDATTGGTEEAEDIEGVEKVQTRVTYNIVFVTSEAAPYSKTGGLGDVCGSLPIVLAARGHRVMVVSPRYLHGSPADKNFAGASELDCHIKVYCFGGEQEVAFFHEYREGVDWVFVDHPSYHRPGNPYGDSRGAFGDNQFRFALLCHAACEAPLVLPLGGYTYGEKCLFLVNDWHAGLVPVLLASKYRPYGVYKDARTILVIHNLAHQGVEPAATYTNLGLPSEWYGALGWVFPTWARTHALDTGEAVNLLKGAIVTVDRILTVSKGYAWEITTVEGGYGLHELLSSRRSVLNGITNGIDIYEWNPSSDKHIASNYSVDDLSGKVQCKIALQKELGLPIKPDCPLIGFIGRLDYQKGIDLIRWATPELLEDDVQFVMLGSGDPLYEDWMRATESTYKDKFRGWVGFNIPISHKITAGADILLMPSRFEPCGLNQLYAMRYGTVPVVHGTGGLRDTVQAFDPYSKGGLGEGTGWIFSPLSKESMLAALRVAIMTYRDHKSSWEGIMKRGMVKDSTWENAAVHYEQVFEWAFIDPPYIN", "cigar": "432D4M91D4M81D4M17D2M57D5M463D3M150D4M36D4MDM42DM287DM29D3M89D8M34D4MD3M14D2MD4M11D5M22DM143D2M586D7M360D3M7D3M60D2M21D3M176D7M112D6M58D2M112DM23D5M16D8M13D8M17D4M26D6M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12MD13M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 3694, "taxon_name": "Populus trichocarpa", "assembly": "JGI2.0", "representative": { "id": "POPTR_0015s01470", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 140, "end": 398, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 451, "end": 600, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 108, 225, 251, 293, 320, 378, 406, 436, 457, 487, 529, 565, 584, 597 ] }, { "node_id": 4737769, "distance_to_parent": 0.031711, "left_index": 131, "right_index": 148, "taxon_id": 91835, "taxon_name": "fabids", "node_type": "speciation", "bootstrap": 16, "children": [ { "node_id": 425977, "distance_to_parent": 0.09244, "left_index": 146, "right_index": 147, "protein_stable_id": "EMJ21839", "gene_stable_id": "PRUPE_ppa002686mg", "gene_display_label": "SSI1", "gene_description": "Glycogen/starch synthases, ADP-glucose type", "sequence": "MESLKFTSLIPCKSSVNLIPTTKFVNHEVIGQVGFVPLWKRRSTRPAFRLRAQVSGGSGGAQDGASALEDQREEKGVLLGAETDSSGSVIGFNLIPPNGELKVPDSPPEDATSDRLDETEDIDGKEKSKAKVTRNIVFVTAEAAPYSKTGGLGDVCGSLPTVLAARGHRVMVVSPRYQNGTAAADQKFSGALDLDTRIKIYCFGGDQEVGFFHEYREGVDWVFVDHPSFHRPGNPYGDSFGAFGDNQFRFTLLCHAACEAPLVLPLGGYTYGEKCLFMVNDWHAGLVPLLLAAKYRPYGVYKDARSVVVIHNLAHQGVEPAVTFKNLGIPPEWYGALEWVFPTWARTHALDTGEAVNILKGAIVTSDRILTVSEGYSWEITTVEGGYGLNELLSSRKSIITGITNGVDVVEWDPSSDVHIASHYSADDLSGKVQCKLALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIQSGMPQLMEDDVQFVMLGSGDPLCEDWMRAAEATYKDKFRGWVGFNVPVSHRITAGCDILLMPSRFEPCGLNQLYAMRYGTVPVVHSTGGLRDTVLNFNPYAQGGQGDGTGWTFSPLTKESMLAALRLACRTFTEYKPSWEGLMKRGMERDFTWESAAVKYEQVFEWAFIDPPYIC", "cigar": "432D4M91D4M84DM17D2M57D5M463D2M285D2M139D2M8D6M81D3MDM29D3M89D8M34D4MD2M15D2MD4M10D6M22DM143D2M586D8M83DMDM221DM124D2M21D3M176D7M112D6M58D2M112DM23D3M19D8M12D8M17D4M26D6M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D26M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 3760, "taxon_name": "Prunus persica", "assembly": "Prupe1_0", "representative": { "id": "PRUPE_ppa002686mg", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 135, "end": 394, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 448, "end": 595, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 99, 221, 247, 289, 316, 374, 402, 432, 453, 483, 525, 561, 580, 593 ] }, { "node_id": 4737771, "distance_to_parent": 0.109383, "left_index": 132, "right_index": 145, "taxon_id": 3814, "taxon_name": "Papilionoideae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 4737778, "distance_to_parent": 0.060738, "left_index": 139, "right_index": 144, "taxon_id": 3847, "taxon_name": "Glycine max", "node_type": "duplication", "bootstrap": 100, "duplication_confidence_score": 1, "children": [ { "node_id": 425791, "distance_to_parent": 0.028243, "left_index": 142, "right_index": 143, "protein_stable_id": "GLYMA06G13480.1", "gene_stable_id": "GLYMA06G13480", "gene_description": "Uncharacterized protein", "sequence": "MESLELVPLLLLHPRASPPLQSIRQPRFPSLLNRKTRNANLRSFSANLQGGGGGATSQGGPFSFEDQTSHHKDDRALLIARETDDFGYLVGFRLLPDSGLEELMSVSHTITEEDSSSDEVEKPEIEDTEEEGAKTRVSHNIVFVTSEAAPYSKTGGLADVCGSLPIALAGRGHRVMVVTPRYIHGTPEDLKFAGAVDLDQSTKVFCFGGAQEIGFYHEYREGVDWVFVDHPSFHRPGNPYGDTFGTFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKCLFLANDWHASLVPILLAAKYRPHGVYKDARSILVIHNIAHQGVEPAITYSNLGLPPEWYGALGWVFPTWARTHALDTGEAVNFLKGAVVTSDRIVTVSKGYSWEITTSEGGCGLHDLLSSRKSILSGITNGIDVTEWDPSCDKHIASNYSADDLSGKAECKISLQKELGLPVRPDCPMIGFIGRLDYQKGIDLIRLAMPELMEADVQFVMLGSGNPIYEDWMRATESAYKDKFRGWVGFNVPISHKITAGCDILLMPSAFEPCGLNQLYAMRYGTIPVVHETGGLRDTVHNYNPYTEESKAESTGWTFSPLTKDSMLAALRYAIQTYNEHKPSWEGLMIRGMTRDYTWVNAATQY", "cigar": "432D4M91D4M784D2M36D4MDM42DM2DM37DM5DM139D2M95D3MDM29D3M89D8M34D4MD3M14D2MD5M8D7M22DM143D2M586D8M83DMDM273D3M7D2M61D2M21D3M176D7M112D6M58D2M112DM23D7M14D8M13D8M17D5M24D6M6D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12MD13M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD3M1998D", "taxon_id": 3847, "taxon_name": "Glycine max", "assembly": "V1.0", "representative": { "id": "GLYMA06G13480", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 140, "end": 398, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 455, "end": 606, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 99, 225, 251, 293, 320, 378, 406, 436, 457, 487, 529, 565, 584, 597 ] }, { "node_id": 425869, "distance_to_parent": 0.013816, "left_index": 140, "right_index": 141, "protein_stable_id": "GLYMA04G41370.1", "gene_stable_id": "GLYMA04G41370", "gene_description": "Uncharacterized protein", "sequence": "MESLELVPLLLLLHPPPSQSFNNSRSIRQLRFPSLLNSKTRNANLRSFSGNLQGGGGATSQDGPFAFEDQVSHHKDDRALVLARETDDFGYLVGFRLLPNSGLEEFMNVSHSITEEDSSSDEVEKPKVEDTEEEEAKTRVSHNIVVVTSEAAPYSKTGGLADVCGSLPIALASRGHRVMVVTPRYIHGTSEDLKFAGAVDLDQSTKVFCFGGAQEIGFYHEYREGVDWVFVDHPSFHRPGNPYGDKFGTFGDNQFRFTLLCHAACEAPLVLPLGGFSYGEKCLFLANDWHASLVPILLAAKYRPHGVYKDARSILVIHNIAHQGVEPAITYRNLGLPSEWYGALEWVFPTWARTHALDTGEAVNFLKGAVVTADRIVTVSKGYSWEITTSEGGCGLHDLLSSRKSILSGITNGIDVTEWDPSCDKHIACNYSADDLSGKAECKISLQKELGLPMRPDCPMIGFIGRLDYQKGIDLIRLAMPELMEADVQFVMLGSGNPIYEDWMRATESIYKDKFRGWVGFNVPISHKITAGCDILLMPSAFEPCGLNQLYAMRYGTIPVVHETGGLRDTVHNFNPYAEESRAESTGWTFSPLTKESMLAALRYAIQTYNEYKSSWEGLMIRGMTRDYTWVNAATQYEQVIEWAFTDPPYC", "cigar": "432D4M91D4M783D3M36D4M85DM5DM139D2M8D6M81D3MDM29D3M89D8M34D4MD3M14D2MD4M9D7M22DM143D2M586D8M83DMDM273D3M7D2M61D2M21D3M176D7M112D6M58D2M112DM23D7M14D8M13D8M17D5M24D6M6D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12MD13M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D2M966D", "taxon_id": 3847, "taxon_name": "Glycine max", "assembly": "V1.0", "representative": { "id": "GLYMA04G41370", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 143, "end": 401, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 459, "end": 610, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 102, 228, 254, 296, 323, 381, 409, 439, 460, 490, 532, 568, 587, 600 ] } ], "representative": { "id": "GLYMA04G41370", "score": 0.013816 } }, { "node_id": 4737782, "distance_to_parent": 0.037792, "left_index": 133, "right_index": 138, "taxon_id": 163742, "taxon_name": "Trifolieae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 426014, "distance_to_parent": 0.049534, "left_index": 136, "right_index": 137, "protein_stable_id": "Tp57577_TGAC_v2_mRNA20061", "gene_stable_id": "Tp57577_TGAC_v2_gene19389", "sequence": "MRALHAGKTNGIQGDLRSGEVEKPDVESVEEEKAKTGVTYNIVFVTSEAAPYSKTGGLADVCGSLPIALAGRGHRVMVISPRYVHGTAADSKFSKAVDLGSPVSVFCFGGAQEVGFYHEYREGVDWVFVDHPSFHRPGNPYGDKHGTFKDNQFRFTLLSHAACEAPLVLPLGGYTYGEKCLFLVNDWHASLVSVLLAAKYRPYGVYKDARSILVIHNIAHQGVEPAITYSNLGLPQDWYGALGWVFPTWARTHALDTGEAVNFLKGAIVTSDRIVTVSKGYSWEITTNEGGFGLHEILRDRKSILSGITNGIDVTEWDPSSDEHIASNYSADDLSGKVKCKIALQKELGLPVRPDCPMIGFVGRLDYQKGIDLIRQAIPELMKDDVQFVMLGSGNPVYEDWMRATESIYKDKFRGWVGFNVPVSHRITAGCDILLMPSTFEPCGLNQLYAMRYGTIPVVHETGGLRDTVQTFNPFAAGSNAEGCNAEGTGWTFTPLTKESMLVALGYAIQTFNEHKSSWEGLMKRGMTRDYTWENAATQYEQIIKWAFMDPPYC", "cigar": "432D4M91DM3109D7M13D8M17D5M24D6M6D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12MD13M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M7D6MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D2M966D", "taxon_id": 57577, "taxon_name": "Trifolium pratense", "assembly": "Trpr", "representative": { "id": "Tp57577_TGAC_v2_gene19389", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 41, "end": 299, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 356, "end": 473, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 126, 152, 194, 221, 279, 307, 337, 358, 388, 430, 466, 490, 503 ] }, { "node_id": 425852, "distance_to_parent": 0.037644, "left_index": 134, "right_index": 135, "protein_stable_id": "AES72510", "gene_stable_id": "MTR_3g091570", "gene_description": "starch synthase 2/amyloplastic protein", "sequence": "MESLELPRLFLHHPRASSAPTRPHPHSTTNSSRFLPQFGFPSKLKNATLRSISVSSQDGPISFEDETQQLRHQDQEDEGRLLSREIDDFGSLVSFRLTPHSASASASGKTAETQGNLRSDEVEKPEIGNAEDEKAQTIVTRNIVFVTSEAAPYSKTGGLADVCGSLPIALAGRGHRVMVISPRYIHGTAADSKFSGAVDLGSPINVFCFGGAQEVGFFHEYREGVDWVFVDHPSFHRPGNPYGDKHGTFKDNQFRFTLLSHAACEAPLVLPLGGFTYGEKCLFLVNDWHASLVSVLLASKYRPYGVYKDARSILVIHNIAHQGVEPAITYSNLGLPQEWYGALGWVFPTWARTHALDTGEAVNFLKGAIVTADRIVTVSKGYSWEITTTEGGFGLQEILRDRKSILSGITNGIDVTEWDPSSDEHIASSYSADDLSGKVKCKIALQKELGLPVRPDCPVIGFVGRLDYQKGIDLIRQAIPELMQDDVQFVMLGSGNPIYEDWMRATESLYKDKFRGWVGFNVPVSHRITAGCDILLMPSTFEPCGLNQLYAMRYGTIPVVHETGGLRDTVQNFNPFAGGSGAEGCNAEGTGWTFSPLTKESMLVALRYAIQTYNEHKSSWEGLMKRGMTRDYTWEKAAAQYEQIIEWAFMDPPYC", "cigar": "432D4M91D2MDM783D3M36D4MDM42D4M37D2MD4M139D2M8D6M81D3MDM29D3M89D2M4D2M34D4MD3M14D2M18D3M22DM143D2M586D8M83DMDM221DM50D5M5D3M61D2M21D3M176D7M112D6M58D2M112DM23D3MD3M14D8M13D8M17D5M24D6M6D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12MD13M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D12M7D6MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D2M966D", "taxon_id": 3880, "taxon_name": "Medicago truncatula", "assembly": "MedtrA17_4.0", "representative": { "id": "MTR_3g091570", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 142, "end": 400, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 456, "end": 611, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 108, 227, 253, 295, 322, 380, 408, 438, 459, 489, 531, 567, 591, 604 ] } ], "representative": { "id": "MTR_3g091570", "score": -99.962356 } } ], "representative": { "id": "MTR_3g091570", "score": -99.924564 } } ], "representative": { "id": "PRUPE_ppa002686mg", "score": -149.90756 } } ], "representative": { "id": "PRUPE_ppa002686mg", "score": -149.875849 } } ], "representative": { "id": "PRUPE_ppa002686mg", "score": -149.875849 } } ], "representative": { "id": "PRUPE_ppa002686mg", "score": -149.856521 } } ], "representative": { "id": "AT5G24300", "score": -174.710805 } } ], "representative": { "id": "AT5G24300", "score": -174.697845 } } ], "representative": { "id": "AT5G24300", "score": -174.671325 } }, { "node_id": 4737671, "distance_to_parent": 0.04201, "left_index": 23, "right_index": 124, "taxon_id": 4734, "taxon_name": "commelinids", "node_type": "speciation", "bootstrap": 6, "children": [ { "node_id": 425954, "distance_to_parent": 0.182368, "left_index": 122, "right_index": 123, "protein_stable_id": "GSMUA_Achr3P03290_001", "gene_stable_id": "GSMUA_Achr3G03290_001", "gene_description": "Soluble starch synthase 1, chloroplastic/amyloplastic", "sequence": "MAAICVHRTPFAASKPQPPHGGPRPSPPSTVGSPRWIRRSYCSHVARWWSAAERRSRKEEDWPYLSAIGKAADPDGGAVQENGLLDPTLLAIGRTQNLGDDSVGEQKTEELAGVLEEEETNGDDSVSASRTVLDSSVEVSDSSTVPDCIVEETKAEKEVLMSSSALDVEEEEETDEQEQTQTRVTRTIVFVSAEAAPYSKTGGLGDVCGSLPISLAARGHRVMVVSPRYLNGVSNKNFANAMILESASRFCALEENMKFLFIMSTEQVFVDHPSYHRAGNPYGDSNGAFGDNQFRFTILCYAACEAPLVLPLGGYTYGEKSLFIVNDWHASLVAVLLAAKYRPYGVYKDARSILVIHNLAHQGVEPATTYEYMGLPPEWYGALEWIFPTWARKHALDKGEAVNLLKGAIVTADRIVTVSQGYSWEITTPEGGHGLNELLNSRKFVLNGITNGIDTNEWNPTSDKHIPFHYSVDDLSGKAQCKAALQKELGLPIRPDCPLIGFIGRLDYQKGTDVIRSALHELLQDDIQFIMLGSGNPETEDWMRWVESTNREKFRGWVGFNVPVSHRITAGCDILLMPSRYEPCGLNQLYAMRYGTVPVVNCTGGLRDTVENFDPFATDSSGQGTGWRFSPLSKESMLLKLRVAIQTYREHKASWEGLMKRGMSKDFSWDSAAIQYERIFDWTFVDPPYIR", "cigar": "432D4M91D4M782D4M36D4MD4M39D4M37D2M241D3MDM29D3M89D8M34D4MD3M14D23M22D2M141D3M586D9M63D8M10D2MDM221DMD3M14D2M27D3M11D3M60D2M21D5M174D7M109DMD7M58D2M135D8M14D10M11D8M17D7M17D12M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D3M7D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 214687, "taxon_name": "Musa acuminata subsp. malaccensis", "assembly": "MA1", "representative": { "id": "GSMUA_Achr3G03290_001", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 188, "end": 440, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 494, "end": 647, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 122, 267, 293, 335, 362, 420, 448, 478, 499, 529, 571, 607, 626, 639 ] }, { "node_id": 4737672, "distance_to_parent": 0.182865, "left_index": 24, "right_index": 121, "taxon_id": 4479, "taxon_name": "Poaceae", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4737673, "distance_to_parent": 0.032498, "left_index": 111, "right_index": 120, "taxon_id": 147369, "taxon_name": "Panicoideae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425763, "distance_to_parent": 0.037697, "left_index": 118, "right_index": 119, "protein_stable_id": "Si006038m", "gene_stable_id": "Si006038m.g", "gene_description": "Glycogen/starch synthases, ADP-glucose type", "sequence": "MATPAVGAACLLLARAAGPGPRRGSGGGGDQARPRRLQRAVRRRCVAELSREGPAPRPMPPQLAPPHVPGFLEPPRDPEPASTPPPVPEDDLGDLDLDLEGIAEDSINDTVVVASEEDLTIMVGKEQARAKITQSIVFVTGEASPYAKSGGLGDVCGSLPVALAARGHRVMVVMPRYLNGTSDKNYANAFYTEKRIRIPCFGGTHEVTFFHEYRDSVDWVFVDHPSYHRPGNIYGDKFGAYGDNQFRYTLLCYAACEAPLVLELGGYIYGQNCMFVVNDWHASLVPVLLAAKYRPYGVYKDSRSILVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSKGYSWEVTTAEGGQGLDELLSSRKSVLNGIVNGIDINDWNPATDKHIPCHYSADDLSGKAKCKAELQKELGLPIRPDVPLIGFIGRLDYQKGIDLIKLIMPDLMREDIQFAMLGSGDPELEDWMRSTESNFRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHATGGLRDTVENFNPFGDNGEQGTGWAFAPLTTENMLWTLRTAISTYREHKSSWEGLMKRGMSKDFTWDHAAEQYEQIFQWAFIDQPYVR", "cigar": "432D4M178D2M17DM59D4M463D3M238D4M37D7M139DM131D2M89D8M34D4MD3M14D8M181D2M586D2M71D5M13DMDM223D3M14D2M27D2M75D2M21D3M176D4M2DM290DM16D8M21D11M10D7M17D7M17D12M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MDMD2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 4555, "taxon_name": "Setaria italica", "assembly": "JGIv2.0", "representative": { "id": "Si006038m.g", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 136, "end": 392, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 445, "end": 597, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 101, 219, 245, 287, 314, 372, 400, 430, 451, 481, 523, 559, 577, 590 ] }, { "node_id": 4737674, "distance_to_parent": 0.020131, "left_index": 112, "right_index": 117, "taxon_id": 147429, "taxon_name": "Andropogoneae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425668, "distance_to_parent": 0.016481, "left_index": 115, "right_index": 116, "protein_stable_id": "KXG19354", "gene_stable_id": "SORBI_010G047700", "gene_description": "hypothetical protein", "sequence": "MATPSAVGAACLVLARAAAGLGLGPGRGGDRARPRRLQRVVRRRCVAELSREGPAPTPRPLPPALLAPPLVPAFLAPPSEPEGEPASTPPPLPDAGLGDLGLQPEGIAEGSIDETVVVASEQDSEIVVGKEQARAKVTQSIVFVTGEASPYAKSGGLGDVCGSLPVALAARGHRVMVVMPRYLNGTSDKNYANAFYTEKHIRIPCFGGEHEVTFFHEYRDSVDWVFVDHPSYHRPGNLYGDKFGAFGDNQFRYTLLCYAACEAPLVLELGGYIYGQNCMFVVNDWHASLVPVLLAAKYRPYGVYKDSRSILVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSKGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPATDKCIPCHYSVDDLSGKAKCKSALQKELGLPIRPEVPLIGFIGRLDYQKGIDLIQLIIPHLMRDDVQFVMLGSGDPELEDWMRSTESDFKDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHATGGLRDTVENFNPFGENGEQGTGWAFAPLTTENMLWTLRTAISTYKEHKSSWEGLMKRGMSKDFTWDHAAEQYEQIFQWAFIDRPYVM", "cigar": "432D4M177D3M17DM59D4M463D3M238D4M38D6M139DM131D2M89D8M34D4MD3M14D8M181D2M586D3M69D6M13DMDM221DMD3M14D2M27D2M75D2M21D3M176D7M290DM16D8M21D11M10D7M17D7M17D12M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MDMD2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 4558, "taxon_name": "Sorghum bicolor", "assembly": "Sorghum_bicolor_v2", "representative": { "id": "SORBI_010G047700", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 141, "end": 397, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 450, "end": 604, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 106, 224, 250, 292, 319, 377, 405, 435, 456, 486, 528, 564, 582, 595 ] }, { "node_id": 425697, "distance_to_parent": 0.01065, "left_index": 113, "right_index": 114, "protein_stable_id": "Zm00001d045261_P006", "gene_stable_id": "Zm00001d045261", "gene_description": "", "sequence": "MATPSAVGAAGVLGLEPEGIAEGSIDNTVVVASEQDSEIVVGKEQARAKVTQNIVFVTGEASPYAKSGGLGDVCGSLPVALAARGHRVMVVMPRYLNGTSDKNYANAFYTEKHIRIPCFGGEHEVTFFHEYRDSVDWVFVDHPSYHRPGNLYGDKFGAFGDNQFRYTLLCYAACEAPLVLELGGYIYGQNCMFVVNDWHASLVPVLLAAKYRPYGVYKDSRSILVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSKGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPATDKCIPCHYSVDDLSGKAKCKGALQKELGLPIRPDVPLIGFIGRLDYQKGIDLIQLIIPDLMREDVQFVMLGSGDPELEDWMRSTESIFKDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHATGGLRDTVENFNPFGENGEQGTGWAFAPLTTENMLWTLRTAISTYREHKSSWEGLMKRGMSKDFTWDHAAEQYEQIFQWAFIDRPYVM", "cigar": "432D4M177D3M17DM59D2M2946D7M10D7M17D7M17D12M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MDMD2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 4577, "taxon_name": "Zea mays", "assembly": "AGPv4", "representative": { "id": "Zm00001d045261", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 53, "end": 310, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 363, "end": 515, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 10, 19, 137, 163, 205, 232, 290, 318, 348, 369, 399, 441, 477, 495, 508 ] } ], "representative": { "id": "Zm00001d045261", "score": 0.01065 } } ], "representative": { "id": "Si006038m.g", "score": -99.962303 } }, { "node_id": 4737675, "distance_to_parent": 0.008226, "left_index": 25, "right_index": 110, "taxon_id": 359160, "taxon_name": "BEP clade", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 4737676, "distance_to_parent": 0.037475, "left_index": 48, "right_index": 109, "taxon_id": 147380, "taxon_name": "Oryzeae", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 425911, "distance_to_parent": 0.041841, "left_index": 107, "right_index": 108, "protein_stable_id": "LPERR06G03680.1", "gene_stable_id": "LPERR06G03680", "sequence": "MATAAGMGIGAASLAPPPPTMAGTPPRVRLGRVRRRCVAELSREGGKPVAPAPLVQQKAVPSFLVPMAPPAPTPSPSSAPAPTPPPLPDSGVGEIEPDLEGIVEDSVDRTVFVASDQDSEIMDVKEQAQAKVTQSIVFVTGEAEPYAKSGGLGDVCGSLPIALAAHGHRVMVVMPRYMNGTLNKNYANAFYTGKHIKIPCFGGEHEVIFFHEYRDNVDWVFVDHPSYHRPGNLYGDNFGAFGDNQFRYTLLCYAACEAPLILELGGYIYGQKCMFVVNDWHASLVPVLLAAKYRPYGVYRDSRSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTVEGGQGLNELLSSRKSVLNGIVNGIDINDWNPSTDKFLPYHYSVDDLSGKAKCKAELQKELSLPIRPDVPLIGFIGRLDYQKGIDLIKLAIPDLMREDIQFVMLGSGDPGFEEWMRSTESDYRDKFRGWVGFSVSVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVETFNPFGEKGEQGTGWAFSPLTIEKMLWALKIAVSTYKEHKSSWEGLMKRGMSRDFTWDHAASQYEQIFEWAFMDQPYVINNPPPQTTSNKNERSIEMTPSALVGKPAYGRMRAEHRAELVPKSVLLTNNEGDCDVDRGNSFWVKAALVYEAVTKHHIDDSNKPLARDLLLWIATQCYARIHPDDPILPPKADDEEGSDESKQMIDAIFLVVGFLSRLHKAMNKERASKATAAAARDAVDDTFKARHMQGIVADVIKLENQIPLSHLFDVAAHVERVVRDAPNSPELKAKLAAIATAGVEIDKYELGFDQASFGGVIDEFCWYYSPFFNNHVPVRTKVEQVAGVVAAAGDGDVAVAATATVSKEEGTLLDRLHASVVRMDRAGKGSGGGGGGKTSRIRTARELRRAGVRFAAVEEGRATVVAFVSAGGAASSATLRLPALAHDFKLATVARNLLAREHGEQTKPVTRYFQMMNELVMDAADARVLRRAGAVRAAAAKDEEIFDLIKRIDGLATYPSVFMAMDIEIEKVEEFYVKRMSNFFVRYRPAVIAASSVVAASVVAIVATRKRRG", "cigar": "432D4M177D3M17D2M57D5M463DM242D2M37D7M139DM225D4M35D4MD2M15D8M181D2M586DM3D4M65D4M240D3M14D2M27D2M75D2M21D5M174D7M290D3M12D10M21D11M10D7M17D7M17D12M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MDMD2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D6M8D4M2D96M13D6M11D8M4D50M18D78M72D26M30D9M172D21M65D16M21D15M6D7M4D4M2D13M6D21M3D87M18D2M9D10M12D13M", "taxon_id": 77586, "taxon_name": "Leersia perrieri", "assembly": "Lperr_V1.4", "representative": { "id": "LPERR06G03680", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 136, "end": 392, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 444, "end": 592, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 101, 219, 245, 287, 314, 372, 400, 430, 451, 481, 523, 559, 577, 590, 642, 754 ] }, { "node_id": 4737681, "distance_to_parent": 0.006383, "left_index": 49, "right_index": 106, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 425924, "distance_to_parent": 0.035044, "left_index": 104, "right_index": 105, "protein_stable_id": "OB06G13760.1", "gene_stable_id": "OB06G13760", "gene_description": "Uncharacterized protein", "sequence": "MATAAGMGMGIGAPSTEFSEEREYHFVARNCGRSFSVDGIVEDSIDKTIFVASEQDSEIMDVKEQVQAKVTRSIVFVTGEASPYAKSGGLGDVCGSLPIALAVRGHRVMVVMPRYMNGALNKNFANAFYTEKHIKIPCFGGEHEVTFFHEYRDSVDWVFVDHPSYHRPGNLYGDNFGAFGDNQFRYTLLCYAACEAPLILELGGYIYGQKCMFVVNDWHASLVPVLLAAKYRPYGVYRDSRSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPSTDKFLPCHYTVDDLSGKAKCKAELQKELGLPIRPDVPLIGFIGRLDYQKGIDLIKLAMPDLMQEDIQFVMLGSGDPGFEGWMRSTESSYRDKFRGWVGFSVPVSHRITAGFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSRDFTWDHAASQYEQIFEWAFMDQPYVM", "cigar": "432D4M177D3M17D2M57D3M709DM37D7M366D3M35D4MD2M15D8M181DM1594D6M17D7M17D12M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M23D6M17D10M33D11M4D9M12D4MDMD2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 4533, "taxon_name": "Oryza brachyantha", "assembly": "Oryza_brachyantha.v1.4b", "representative": { "id": "OB06G13760", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 74, "end": 330, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" } ], "exon_junctions": [ 13, 39, 157, 183, 225, 252, 310, 338, 368, 389, 419, 461, 488, 506, 519, 572 ] }, { "node_id": 4737684, "distance_to_parent": 0.022273, "left_index": 50, "right_index": 103, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 425725, "distance_to_parent": 0.00523, "left_index": 101, "right_index": 102, "protein_stable_id": "OPUNC06G03820.1", "gene_stable_id": "OPUNC06G03820", "gene_display_label": "SSS1", "gene_description": "Starch synthase I", "sequence": "MSRADPLLTFQCPIRLTEDSIDKTIFVASEQESEIMDVKEQAQAKVTRSVVFVTGEASPYAKSGGLGDVCGSLPIALALRGHRVMVVMPRYMNGALNKNFANAFYTEKHIKIPCFGGEHEVTFFHEYRDSVDWVFVDHPSYHRPGNLYGDNFGAFGDNQFRYTLLCYAACEAPLILELGGYIYGQKCMFVVNDWHASLVPVLLAAKYRPYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPSTDKFLPYHYSVDDLSGKAKCKAELQKELGLPIRPDVPLIGFIGRLDYQKGIDLIKLAIPDLMRDNIQFVMLGSGDPGFEGWMRSTESEYRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPYVV", "cigar": "1880D3M1087D2M14D2M27DM76D2M21D5M540D5M17D7M17D12M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MDMD2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 4537, "taxon_name": "Oryza punctata", "assembly": "AVCL00000000", "representative": { "id": "OPUNC06G03820", "score": -150 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 50, "end": 306, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 359, "end": 511, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 15, 133, 159, 201, 228, 286, 314, 344, 365, 395, 437, 473, 491, 504 ] }, { "node_id": 4737685, "distance_to_parent": 0.008596, "left_index": 51, "right_index": 100, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 0, "children": [ { "node_id": 425757, "distance_to_parent": 0.009349, "left_index": 98, "right_index": 99, "protein_stable_id": "OMERI06G04610.1", "gene_stable_id": "OMERI06G04610", "gene_display_label": "OMERI06G04610", "sequence": "MATAAGMGIGAACLVAPQVRPGRRLRLQRVRRRCVAELSRDGGSAQRPLAPAPLVKQPVLPTFLVPTSTPPTPTQSPAPAPTPPPLPDSGVGEIEPDLEGLTEDSIDKTIFVASEQESEIMDVKEQAQAKVTRSVVFVTGEASPYAKSGGLGDVCGSLPIALALRGHRVMVVMPRYMNGALNKNFANAFYTEKHIKIPCFGGEHEVTFFHEYRDSVDWVFVDHPSYHRPGNLYGDNFGAFGDNQFRYTLLCYAACEAPLILELGGYIYGQKCMFVVNDWHASLVPVLLAAKYRPYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPSTDKFLPYHYSVDDLSGKAKCKAELQKELGLPIRPNVPLIGFIGRLDYQKGIDLIKLAIPDLMRDNIQFVMLGSGDPGFEGWMRSTESEYRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPYVM", "cigar": "432D4M177D3M17D2M57D5M706D2M37D7M366D3M35D4MD2M15D8M181D2M586D8M65D4M240D3M14D2M27D2M75D2M21D6M173D7M290DM14D10M21D11M10D7M17D7M17D12M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MDMD2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 40149, "taxon_name": "Oryza meridionalis", "assembly": "Oryza_meridionalis_v1.3", "representative": { "id": "OMERI06G04610", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 135, "end": 391, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 444, "end": 596, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 100, 218, 244, 286, 313, 371, 399, 429, 450, 480, 522, 558, 576, 589 ] }, { "node_id": 4737686, "distance_to_parent": 0, "left_index": 52, "right_index": 97, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "duplication", "bootstrap": 0, "duplication_confidence_score": 0.5, "children": [ { "node_id": 4737687, "distance_to_parent": 0.322549, "left_index": 83, "right_index": 96, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "dubious", "bootstrap": 1, "duplication_confidence_score": 0, "children": [ { "node_id": 4737688, "distance_to_parent": 0.035124, "left_index": 90, "right_index": 95, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 86, "children": [ { "node_id": 425759, "distance_to_parent": 0.00925, "left_index": 93, "right_index": 94, "protein_stable_id": "OGLUM10G05160.1", "gene_stable_id": "OGLUM10G05160", "sequence": "MRITQVIATSVILGLLWWHSDPSTPKGVEPASTYPNLGLPPEWYGSLEWVFPEVQYSSMCIKIAISTGGHACFGDPGFEGWMRSIESDCDILLMPSRFEPCGLNQLYAMQYGIVPVVHGTGGLRVKNQEGVANFDDILAKSVAFMVARVD", "cigar": "432D4M91D2M4274D4M40D5M75DMD8M14DM68D16M11D3MD7M18D3M124D2M6D4M25D5M9D5MD2M261DM60D3M12D6M2D6M51D9M11D6M17D10M33D11M165D2M34D5MDM15D2M52D5M10D2M17D2M298DM13DMDM271D3MDM1467D", "taxon_id": 40148, "taxon_name": "Oryza glumipatula", "assembly": "ALNU02000000", "representative": { "id": "OGLUM10G05160", "score": 0 }, "domains": [ { "id": "IPR015813", "root": 15813, "start": 125, "end": 150, "name": "Pyrv/PenolPyrv_Kinase-like_dom", "description": "Pyruvate/Phosphoenolpyruvate kinase-like domain" } ], "exon_junctions": [ 27, 69, 88, 124 ] }, { "node_id": 425704, "distance_to_parent": 0, "left_index": 91, "right_index": 92, "protein_stable_id": "ONIVA02G10690.1", "gene_stable_id": "ONIVA02G10690", "sequence": "MRITQVIATSVILGLLWWHFDPSTPKGVEPASTYPNLGMPPEWYGSLEWVFPEVQYSSMCIKIAISTGGHACFGDPGFEGWMRSIESEYKDKFRGWVGFTVLVSHRITACCDILLMPSRFEPCGLNQLYAMQYGIVPVVHGTGGLRVKNQEEVANFDDILAKSVAFMVARVD", "cigar": "432D4M91D2M4274D4M40D5M75DMD8M14DM68D16M11D3MD7M18D3M124D2M6D4M25D5M9D5MD2M261DM60D3M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M165D2M34D5MDM15D2M52D5M10D2M17D2M298DM13DMDM271D3MDM1467D", "taxon_id": 4536, "taxon_name": "Oryza nivara", "assembly": "AWHD00000000", "representative": { "id": "ONIVA02G10690", "score": 0 }, "exon_junctions": [ 27, 69, 110, 146 ] } ], "representative": { "id": "ONIVA02G10690", "score": 0 } }, { "node_id": 4737690, "distance_to_parent": 0, "left_index": 84, "right_index": 89, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 1, "children": [ { "node_id": 425826, "distance_to_parent": 0.162394, "left_index": 87, "right_index": 88, "protein_stable_id": "BGIOSGA032671-PA", "gene_stable_id": "BGIOSGA032671", "gene_description": "Putative uncharacterized protein", "sequence": "MELKHFERIDRKMEPRDLTRCGCLAKLEIELNEEKGVWFVKEFDNEHTHEFANPDHVATLGVHRVMSDSQKAQAVELRMSGLRPFQIMEVMENNHDELDEVGFVMKDLYNFFTQYKMKNIKGHACFGDPGFEGWMRSIESEYKDKFRGWVGFTVLVSHRITACCDILLMPSRFEPCGLNQLYAMQYGIVPVVHGTGGLRVKNQEGVANFDDILAKSVAFMVARVD", "cigar": "432D4M91D4M54DM1478D2M953D3M569D6M905D4M163D2M2D4MDMDM33D2M5D4M2D5M12D6M7DM6D4M33D5M43D3M75DMD8M14DM68D8M4D18MD7M18D4M15D3M104D3M6D4M25D2M15D2MD2M261DM60D3M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M165D2M34D5MDM15D2M52D5M10D2M17D2M298DM13DMDM271D3MDM1467D", "taxon_id": 39946, "taxon_name": "Oryza sativa Indica Group", "assembly": "ASM465v1", "representative": { "id": "BGIOSGA032671", "score": 0 }, "domains": [ { "id": "IPR004330", "root": 4330, "start": 10, "end": 52, "name": "FAR1_DNA_bnd_dom", "description": "FAR1 DNA binding domain" } ], "exon_junctions": [ 122, 163, 199 ] }, { "node_id": 425767, "distance_to_parent": 0, "left_index": 85, "right_index": 86, "protein_stable_id": "OBART10G05250.1", "gene_stable_id": "OBART10G05250", "sequence": "MALCVEPASTYPNLGMPPEWYGSLEWVFPEVQYSSMCIKIAISTGGHACFGDPGFEGWMRSIESEYKDKFRGWVGFTVLVSHRITACCDILLMPSRFEPCGLNQLYAMQYGIVPVVHGTGGLRVKNQEEVANFDDILVKNQEGVANFDDILAKSVAFMVARVD", "cigar": "432D4M4586D14M11D3MD7M18D3M124D2M6D4M25D5M9D5MD2M261DM60D3M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D24M151D3M34D5MDM15D2M52D5M10D2M17D2M298DM13DMDM271D3MDM1467D", "taxon_id": 65489, "taxon_name": "Oryza barthii", "assembly": "O.barthii_v1", "representative": { "id": "OBART10G05250", "score": 0 }, "exon_junctions": [ 4, 46, 87, 123, 137 ] } ], "representative": { "id": "OBART10G05250", "score": 0 } } ], "representative": { "id": "OBART10G05250", "score": 0 } }, { "node_id": 4737692, "distance_to_parent": 0.003389, "left_index": 53, "right_index": 82, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 25, "children": [ { "node_id": 425769, "distance_to_parent": 0.001711, "left_index": 80, "right_index": 81, "protein_stable_id": "KN538819.1_FGP032", "gene_stable_id": "KN538819.1_FG032", "sequence": "MATAAGMGIGAACLVAPQVRPGRRLRLQRVRRRCVAELSRDGLTEDSIDKTIFVASEQESEIMDVKEQAQAKVTRSVVFVTGEASPYAKSGGLGDVCGSLPIALALRGHRVMVVMPRYMNGALNKNFANAFYTEKHIKIPCFGGEHEVTFFHEYRDSVDWVFVDHPSYHRPGNLYGDNFGAFGDNQFRYTLLCYAACEAPLILELGGYIYGQKCMFVVNDWHASLVPVLLAAKYRPYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPSTDKFLPYHYSVDDLSGKAKCKAELQKELGLPIRPDVPLIGFIGRLDYQKGIDLIKLAIPDLMRDNIQFVMLGSGDPGFEGWMRSTESGYRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPYVM", "cigar": "432D4M177D3M17D2M57D5M706D2M37D7M366D3M35D4MD2M15D8M181D2M1594D5M17D7M17D12M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MDMD2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 4528, "taxon_name": "Oryza longistaminata", "assembly": "O_longistaminata_v1.0", "representative": { "id": "KN538819.1_FG032", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 77, "end": 333, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 386, "end": 538, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 42, 160, 186, 228, 255, 313, 341, 371, 392, 422, 464, 500, 518, 531 ] }, { "node_id": 4737695, "distance_to_parent": 0.000839, "left_index": 54, "right_index": 79, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 3, "children": [ { "node_id": 425756, "distance_to_parent": 0.00084, "left_index": 77, "right_index": 78, "protein_stable_id": "OGLUM06G04130.1", "gene_stable_id": "OGLUM06G04130", "sequence": "MATAAGMGIGAACLVAPQVRPGRRLRLQRVRRRCVAELSRDGGSAQRPLAPAPLVKQPVMPTFLVPTSTPPAPAQSPSPAPTPPPLPDSGVGEIEPDLEGLTEDSIDKTIFVASEQESEIMDVKEQAQAKVTRSVVFVTGEASPYAKSGGLGDVCGSLPIALALRGHRVMVVMPRYMNGALNKNFANAFYTEKHIKIPCFGGEHEVTFFHEYRDSVDWVFVDHPSYHRPGNLYGDNFGAFGDNQFRYTLLCYAACEAPLILELGGYIYGQKCMFVVNDWHASLVPVLLAAKYRPYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPSTDKFLPYHYSVDDLSGKAKCKAELQKELGLPIRPDVPLIGFIGRLDYQKGIDLIKLAIPDLMRDNIQFVMLGSGDPGFEGWMRSTESGYRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPYVM", "cigar": "432D4M177D3M17D2M57D5M706D2M37D7M366D3M35D4MD2M15D8M181D2M586D8M65D4M240D3M14D2M27D2M75D2M21D6M173D7M290DM14D10M21D11M10D7M17D7M17D12M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MDMD2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 40148, "taxon_name": "Oryza glumipatula", "assembly": "ALNU02000000", "representative": { "id": "OGLUM06G04130", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 135, "end": 391, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 444, "end": 596, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 100, 218, 244, 286, 313, 371, 399, 429, 450, 480, 522, 558, 576, 589 ] }, { "node_id": 4737699, "distance_to_parent": 0, "left_index": 55, "right_index": 76, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "dubious", "bootstrap": 0, "duplication_confidence_score": 0, "children": [ { "node_id": 4737705, "distance_to_parent": 0, "left_index": 62, "right_index": 75, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 2, "children": [ { "node_id": 425808, "distance_to_parent": 0, "left_index": 73, "right_index": 74, "protein_stable_id": "OBART06G04010.1", "gene_stable_id": "OBART06G04010", "sequence": "MATAAGMGIGAACLVAPQVRPGRRLRLQRVRRRCVAELSRDGGSAQRPLAPAPLVKQPVMPTFLVPTSTPPAPAQSPWPAPTPPPLPDSGVEEIEPDLEGLTEDSIDKTIFVASEQESEIMDVKEQAQAKVTRSVVFVTGEASPYAKSGGLGDVCGSLPIALALRGHRVMVVMPRYMNGALNKNFANAFYTEKHIKIPCFGGEHEVTFFHEYRDSVDWVFVDHPSYHRPGNLYGDNFGAFGDNQFRYTLLCYAACEAPLILELGGYIYGQKCMFVVNDWHASLVPVLLAAKYRPYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPSTDKFLPYHYSVDDLSGKAKCKAELQKELGLPIRPDVPLIGFIGRLDYQKGIDLIKLAIPDLMRDNIQFVMLGSGDPGFEGWMRSTESGYRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPYVM", "cigar": "432D4M177D3M17D2M57D5M706D2M37D7M366D3M35D4MD2M15D8M181D2M586D8M65D4M240D3M14D2M27D2M75D2M21D6M173D7M290DM14D10M21D11M10D7M17D7M17D12M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MDMD2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 65489, "taxon_name": "Oryza barthii", "assembly": "O.barthii_v1", "representative": { "id": "OBART06G04010", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 135, "end": 391, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 444, "end": 596, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 100, 218, 244, 286, 313, 371, 399, 429, 450, 480, 522, 558, 576, 589 ] }, { "node_id": 4737709, "distance_to_parent": 0, "left_index": 63, "right_index": 72, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 2, "children": [ { "node_id": 425789, "distance_to_parent": 0.002524, "left_index": 70, "right_index": 71, "protein_stable_id": "ONIVA06G20230.1", "gene_stable_id": "ONIVA06G20230", "sequence": "MATAAGMGIGAACLVAPQVRPGRRLRLQRVRRRCVAELSRDGGSAQRPLAPAPLVKQPVMPTFLVPTSTPPAPAQSPSPAPTPPPLPDSGVGEIEPDLEGLTEDSIDKTIFVASEQESEIMDVKEQAQAKVTRSVVFVTGEASPYAKSGGLGDVCGSLPIALALRGHRVMVVMPRYMNGALNKNFANAFYTEKHIKIPCFGGEHEVTFFHEYRDSVDWVFVDHPSYHRPGNLYGDNFGAFGDNQFRYTLLCYAACEAPLILELGGYIYGQKCMFVVNDWHASLVPVLLAAKYRPYGVYRDARSVLVIHNLAHQGVEPAGTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPSTDKFLPYYYSVDDLSGKAKCKAELQKELGLPIRPDVPLIGFIGRLDYQKGIDLIKLAIPDLMRDNIQFVMLGSGDPGFEGWMRSTESGYRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPYVM", "cigar": "432D4M177D3M17D2M57D5M706D2M37D7M366D3M35D4MD2M15D8M181D2M586D8M65D4M240D3M14D2M27D2M75D2M21D6M173D7M290DM14D10M21D11M10D7M17D7M17D12M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MDMD2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 4536, "taxon_name": "Oryza nivara", "assembly": "AWHD00000000", "representative": { "id": "ONIVA06G20230", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 135, "end": 391, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 444, "end": 596, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 100, 218, 244, 286, 313, 371, 399, 429, 450, 480, 522, 558, 576, 589 ] }, { "node_id": 4737716, "distance_to_parent": 0.002522, "left_index": 64, "right_index": 69, "taxon_id": 4527, "taxon_name": "Oryza", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425664, "distance_to_parent": 0, "left_index": 67, "right_index": 68, "protein_stable_id": "OS06T0160700-01", "gene_stable_id": "OS06G0160700", "gene_description": "Soluble starch synthase 1, chloroplastic/amyloplastic", "sequence": "MATAAGMGIGAACLVAPQVRPGRRLRLQRVRRRCVAELSRDGGSAQRPLAPAPLVKQPVLPTFLVPTSTPPAPTQSPAPAPTPPPLPDSGVGEIEPDLEGLTEDSIDKTIFVASEQESEIMDVKEQAQAKVTRSVVFVTGEASPYAKSGGLGDVCGSLPIALALRGHRVMVVMPRYMNGALNKNFANAFYTEKHIKIPCFGGEHEVTFFHEYRDSVDWVFVDHPSYHRPGNLYGDNFGAFGDNQFRYTLLCYAACEAPLILELGGYIYGQKCMFVVNDWHASLVPVLLAAKYRPYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPSTDKFLPYHYSVDDLSGKAKCKAELQKELGLPIRPDVPLIGFIGRLDYQKGIDLIKLAIPDLMRDNIQFVMLGSGDPGFEGWMRSTESGYRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPYVM", "cigar": "432D4M177D3M17D2M57D5M706D2M37D7M366D3M35D4MD2M15D8M181D2M586D8M65D4M240D3M14D2M27D2M75D2M21D6M173D7M290DM14D10M21D11M10D7M17D7M17D12M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MDMD2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 39947, "taxon_name": "Oryza sativa Japonica Group", "assembly": "IRGSP-1.0", "representative": { "id": "OS06G0160700", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 135, "end": 391, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 444, "end": 596, "name": "Glyco_trans_1", 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"description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 100, 218, 244, 286, 313, 371, 399, 429, 450, 480, 522, 558, 576, 589 ] }, { "node_id": 425951, "distance_to_parent": 0, "left_index": 57, "right_index": 58, "protein_stable_id": "ORGLA06G0037300.1", "gene_stable_id": "ORGLA06G0037300", "gene_description": "Glycogen/starch synthases, ADP-glucose type", "sequence": 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"Glycosyl transferase, family 1" } ], "exon_junctions": [ 100, 218, 244, 286, 313, 371, 399, 429, 450, 480, 522, 558, 576, 589 ] } ], "representative": { "id": "ORGLA06G0037300", "score": -100 } } ], "representative": { "id": "ORGLA06G0037300", "score": -100 } } ], "representative": { "id": "ORGLA06G0037300", "score": -100 } } ], "representative": { "id": "ORGLA06G0037300", "score": -99.999161 } } ], "representative": { "id": "ORGLA06G0037300", "score": -99.995772 } } ], "representative": { "id": "ORGLA06G0037300", "score": -99.995772 } } ], "representative": { "id": "OPUNC06G03820", "score": -149.99477 } } ], "representative": { "id": "OPUNC06G03820", "score": -149.97249699999998 } } ], "representative": { "id": "OPUNC06G03820", "score": -149.96611399999998 } }, { "node_id": 4737726, "distance_to_parent": 0.030872, "left_index": 26, "right_index": 47, "taxon_id": 147368, "taxon_name": "Pooideae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425940, "distance_to_parent": 0.036005, "left_index": 45, "right_index": 46, "protein_stable_id": "BRADI1G48610.1", "gene_stable_id": "BRADI1G48610", "gene_description": "Glycogen/starch synthases, ADP-glucose type", "sequence": "MATPGVGLGAACLAAAASVAPRRRADPAAPLARRARLLRRVVRGRCVAELSREGAPAAPSQPPVPRPLPSADQQLPPPVLPSFLAPTEAPAPTPLPLPDADAGVGELGPELDIQGIAEDYIDSTDVAASEQDSEIMDAKEQSQAKVTRSIVFVTGEAAPYAKSGGLGDVCGSLPIALAARGHRVMVVMPRYLNGSSDKNYAKAFYTGKNIKIPCFGGSHEVTYFHEYRDNVDWVFVDHPSYHRPGSLYGDNFGAFGDNQFRYTLLCYAACEAPLILELGGYIYGQNCMFVVNDWHASLVPVLLAAKYRPYGVYRDSRSTLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTSDRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPTMDKCLPYHYSVDDLSGKAKCKAELQKELGLPIRPDIPLIGFIGRLDYQKGIDLIKLAIPDLMRDDVQFVMLGSGDPVFEGWMRSTESSYKDKFRGWVGFSIPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHETGGLRDTVQTFNPFGKTGEEGTGWAFSPLTVDKMLWALRTAMTTFREHKPSWEGLMKRGMSKDHTWDHAAEQYEQIFEWAFVDQPYVM", "cigar": "432D4M178D2M17D2M57D5M463D3M238D4M37D7M271D2M89D8M34D4MD3M14D8M181D2M586D3MD6M62D7M11D2MDM221DMD3M14D2M27D2M75D2M21DM180D5M290DM16D9M19D12M8D9M17D7M17D12M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MDMD2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 15368, "taxon_name": "Brachypodium distachyon", "assembly": "v1.0", "representative": { "id": "BRADI1G48610", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 150, "end": 406, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 461, "end": 610, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 115, 233, 259, 301, 328, 386, 414, 444, 465, 495, 537, 573, 591, 604 ] }, { "node_id": 4737727, "distance_to_parent": 0.034918, "left_index": 27, "right_index": 44, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425669, "distance_to_parent": 0.018378, "left_index": 42, "right_index": 43, "protein_stable_id": "MLOC_70501.1", "gene_stable_id": "MLOC_70501", "gene_description": "Glycogen/starch synthases, ADP-glucose type", "sequence": "MDANDQPLAKVTRSIVFVTGEAAPYAKSGGLGDVCGSLPIALAARGHRVMVVMPRYLNGTSDKNYAKALYTGKHIKIPCFGGSHEVTFFHEYRDNVDWVFVDHPSYHRPGSLYGDNFGAFGDNQFRYTLLCYAACEAPLILELGGYIYGQSCMFVVNDWHASLVPVLLAAKYRPYGVYRDSRSTLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPTTDKCLPHHYSVDDLSGKAKCKAELQRELGLPVREDVPLIGFIGRLDYQKGIDLIKMAIPDLMREDVQFVMLGSGDPVFEGWMRSTESSYKDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVETFNPFGAKGEEGTGWAFSPLTVEKMLWALRTAISTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQIFEWAFVDQPYVM", "cigar": "3714D4M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MDMD2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 112509, "taxon_name": "Hordeum vulgare subsp. vulgare", "assembly": "ASM32608v1", "representative": { "id": "MLOC_70501", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 15, "end": 271, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 325, "end": 475, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 98, 124, 166, 193, 251, 279, 309, 330, 360, 402, 438, 456, 469 ] }, { "node_id": 4737729, "distance_to_parent": 0.007897, "left_index": 28, "right_index": 41, "taxon_id": 147389, "taxon_name": "Triticeae", "node_type": "speciation", "bootstrap": 89, "children": [ { "node_id": 4737730, "distance_to_parent": 0.005488, "left_index": 35, "right_index": 40, "taxon_id": 4564, "taxon_name": "Triticum", "node_type": "speciation", "bootstrap": 100, "children": [ { "node_id": 425686, "distance_to_parent": 0.011, "left_index": 38, "right_index": 39, "protein_stable_id": "TRIUR3_07809-P1", "gene_stable_id": "TRIUR3_07809", "gene_description": "Starch synthase 1, chloroplastic/amyloplastic", "sequence": "MGGSSSDTASSSYKRSAAFCKIRKHNQQELEGASTFEYRSSIEIEDPCITVLFFNEMGGPRRIAEDSIDSIIVTASEQDSEIMDANEQPQAKITRSIVFVTGEAAPYAKSGGLGDVCGSLPIALAARGHRVMVVMPRYLNGSSDKNYAKALYTAKHIQIPCFGGSHEVTFFHEYRDNVDWVFVDHPSYHRPGSLYGDNFGAFGDNQFRYTLLCYAACEAPLILELGGYIYGQNCMFVVNDWHASLVPVLLAAKYRPYGVYRDSRSTLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQAKCKAELQKELGLPVREDVPLLDSQIGFIGRLDYQKGIDLIKMAIPDLMREDVQFVMLGSGDPVFEGWMRSTESSYKDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVETFNPFGAKGEEGTGWAFSPLTVDKMLWALRTAMSTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQIFEWAFVDQPYVM", "cigar": "615DM17DM58D5M463DM559D2M89D8M34D4MD2M15D6M183D2M586D8M83DMDM221DMD3M14D2M27D2M75D2M21D5M179D2M290DM66D7M17D7M17D12M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D8M139DMD5M8D5M4D3M24D17M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MDMD2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 4572, "taxon_name": "Triticum urartu", "assembly": "ASM34745v1", "representative": { "id": "TRIUR3_07809", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 97, "end": 337, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 357, "end": 503, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": 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"MAATGVGAGCLAPSVRLRADPAHRATACVVRARLRRVARGRYVAELSREGPAARPAQQQLAPPVVPGFLAPPPPAPAQSPAPTQPPLPDAGVGELAPDLLLEGIAEDSIDSIIVTASEQDSEIMDANEQPQAKITRSIVFVTGEAAPYAKSGGLGDVCGSLPIALAARGHRVMVVMPRYLNGSSDKNYAKALYTAKHIQIPCFGGSHEVTFFHEYRDNVDWVFVDHPSYHRPGSLYGDNFGAFGDNQFRYTLLCYAACEAPLILELGGYIYGQNCMFVVNDWHASLVPVLLAAKYRPYGVYRDSRSTLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPTTDKCLPHHYSVDDLSGKAKCKAELQKELGLPVREDVPLIGFIGRLDYQKGIDLIKMAIPDLMREDVQFVMLGSGDPVFEGWMRSTESNYKDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVETFNPFGAKGEEGTGWAFSPLTVDKMLWALRTAMSTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQIFEWAFVDQPYVM", "cigar": 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"MAATGVGAGCLAPSVRLRADPATAARASACVVRARLRRVARGRYVAELSREGPAARPAQQQQLAPPLVPGFLAPPPPAPAQSPAPTQPPLPDAGVGELAPDLLLEGIAEDSIDSIIVAASEQDSEIMDAKDQPQAKVTRSIVFVTGEAAPYAKSGGLGDVCGSLPIALAARGHRVMVVMPRYLNGSSDKNYAKALYTAKHIKIPCFGGSHEVTFFHEYRDNVDWVFVDHPSYHRPGSLYGDNFGAFGDNQFRYTLLCYAACEAPLILELGGYIYGQNCMFVVNDWHASLVPVLLAAKYRPYGVYRDSRSTLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPTTDKCLPHHYSVDDLSGKAKCKAELQKELGLPVREDVPLIGFIGRLDYQKGIDLIKMAIPELMREDVQFVMLGSGDPIFEGWMRSTESSYKDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVETFNPFGAKGEEGTGWAFSPLTVDKMLWALRTAMSTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQIFEWAFVDQPYVM", "cigar": 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"MAATGVGAGCLAPSVRLRADPATAARASACVVRARLRRLARGRYVAELSREGPAARPAQQQQLAPPLVPGFLAPPPPAPAQSPAPTQPPLPDAGVGELAPDLLLEGIAEDSIDSIIVAASEQDSEIMDANEQPQAKVTRSIVFVTGEAAPYAKSGGLGDVCGSLPIALAARGHRVMVVMPRYLNGSSDKNYAKALYTGKHIKIPCFGGSHEVTFFHEYRDNVDWVFVDHPSYHRPGSLYGDNFGAFGDNQFRYTLLCYAACEAPLILELGGYIYGQNCMFVVNDWHASLVPVLLAAKYRPYGVYRDSRSTLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPTTDKCLPHHYSVDDLSGKAKCKAELQKELGLPVREDVPLIGFIGRLDYQKGIDLIKMAIPELMREDVQFWFLLLFLQVMLGSGDPIFEGWMRSTESSYKDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVETFNPFGAKGEEGTGWAFSPLTVDKMLWALRTAMSTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQIFEWAFVDQPYVM", "cigar": "432D4M178D2M17DM59D4M463D3M238DM41D6M139D2M97DMDM29D3M89D7M35D4MD3M14D8M181D2M586D3MD4M83DMDM221DMD3M14D2M27D2M75D2M21D4M175D7M290DM16D8M21D11M8D9M17D7M17D12M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2D11M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MDMD2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 4565, "taxon_name": "Triticum aestivum", "assembly": "TGACv1", "representative": { "id": "TRIAE_CS42_7DS_TGACv1_622674_AA2043770", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 141, "end": 397, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 450, "end": 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"score": -174.409464 } }, { "node_id": 4737811, "distance_to_parent": 0.160243, "left_index": 14, "right_index": 19, "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "node_type": "duplication", "bootstrap": 100, "duplication_confidence_score": 1, "children": [ { "node_id": 425666, "distance_to_parent": 0.001675, "left_index": 17, "right_index": 18, "protein_stable_id": "PP1S404_28V6.1", "gene_stable_id": "PP1S404_28V6", "gene_description": "Predicted protein", "sequence": "MAAVQLTSCCGRGVASTGVASSHKRTEEGIGSGLRGNWVSTSRISRALSLKTSAIEVLVVQVTPLKAVSSSSSSRNGVWCSAVESSIGAWPQTPAPENTLTFSADPSERNQEQEQMLKDLADSDETKRAKTLLNVVFVSAEVAPYSKTGGLGDVCGSLPIALAQRGHRVMVVAPRYMNGVTDAMYEGAFDCQCRIPVACFGATHEVAFFHEFRAGVDWVFVDHPSYHRQGTPYGDTRGAFGDNQFRFTLLCHAACEAPLVLALGGYTYGEKCVFVANDWHASLVPVLLASKYRRHGVYVNSRCILAIHNLAHQGVEPATTFSNLGIPLEWYGALEWVFPEWARLHALDKGEAVNHLKGAVVTSDRILTVSQGYAWEITTPEGGCGLDKLLGSRAAVINGITNGVDVDDWSPSVDRHLPATFTVGDMAGKAECKAALQRELGLPVRPEVPLIGFIGRLDYQKGPDIVQEGLPELMTDDIQVVMLGSGDTEMEKWMKWAETQYREKFRGWVGFSVPVAHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVAHATGGLRDTIENYNPDANNGEGSGTGWIFSPLSKDAMVNSLWGAIFAYRNDKEGWARMQERGMEKDVSWTRSALQYEQVFEWAMIDPPYAA", "cigar": "432D4M91D4M54D3M22D6M17D2M57D5M463D3M238D4M37D2M240D4MDM29D3M89D8M34D4MD3M14D10M5D8M22DM143D3M584D7M755D6M58D2M112D2M64D8M17D5M15D16M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "assembly": "ASM242v1", "representative": { "id": "PP1S404_28V6", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 134, "end": 390, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 447, "end": 590, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ] }, { "node_id": 425865, "distance_to_parent": 0, "left_index": 15, "right_index": 16, "protein_stable_id": "PP1S404_31V6.1", "gene_stable_id": "PP1S404_31V6", "gene_description": "Predicted protein", "sequence": "MATIHQTNCFCKSVASNNRIEKVLTPRLQDVGVTTSRISRTLSLKTSAIEALVVQVTPLKAVSSSSSSRNGVWCSAVESSIGAWPQTPAPENTLTFSADPSERNQEQEQMLKDLADSDETKRAKTLLNVVFVSAEVAPYSKTGGLGDVCGSLPIALAQRGHRVMVVAPRYMNGVTDAMYEGAFDCQCRIPVACFGATHEVAFFHEFRAGVDWVFVDHPSYHRQGTPYGDTRGAFGDNQFRFTLLCHAACEAPLVLALGGYTYGEKCVFVANDWHASLVPVLLASKYRRHGVYVNSRCILAIHNLAHQGVEPATTFSNLGIPLEWYGALEWVFPEWARLHALDKGEAVNHLKGAVVTSDRILTVSQGYAWEITTPEGGCGLDKLLGSRAAVINGITNGVDVDDWSPSVDRHLPATFTVGDMAGKAECKAALQRELGLPVRPEVPLIGFIGRLDYQKGPDIVQEGLPELMTDDIQVVMLGSGDTEMEKWMKWAETQYREKFRGWVGFSVPVAHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVAHATGGLRDTIENYNPDANNGEGSGTGWIFSPLSKDAMVNSLWGAIFAYRNDKEGWARMQERGMEKDVSWTRSALQYEQVFEWAMIDPPYAA", "cigar": "432D4M91D4M54D3M22D4M80D3M463D3M238D4M37D2M240D4MDM29D3M89D8M34D4MD3M14D10M5D8M22DM143D3M584D7M755D6M58D2M112D2M64D8M17D5M15D16M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D18M12D2M26D5M6D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D9MD3M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M14D3MD5M8D5M4D3M24D7M4D6M2D6M132D13M12D3M26DM2DM8D2M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D4MD4M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 3218, "taxon_name": "Physcomitrella patens", "assembly": "ASM242v1", "representative": { "id": "PP1S404_31V6", "score": 0 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 128, "end": 384, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 441, "end": 584, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ] } ], "representative": { "id": "PP1S404_31V6", "score": 0 } } ], "representative": { "id": "AT5G24300", "score": -174.167222 } } ], "representative": { "id": "AT5G24300", "score": -174.069003 } }, { "node_id": 4737813, "distance_to_parent": 0.042842, "left_index": 6, "right_index": 11, "taxon_id": 3055, "taxon_name": "Chlamydomonas reinhardtii", "node_type": "duplication", "bootstrap": 68, "duplication_confidence_score": 1, "children": [ { "node_id": 425937, "distance_to_parent": 0.37498, "left_index": 9, "right_index": 10, "protein_stable_id": "EDP00740", "gene_stable_id": "CHLREDRAFT_120082", "gene_description": "Soluble starch synthase", "sequence": "GRAERPRDLVFVTAEAAPWSKTGGLGDVMGALPRSLAARGHRVMVVSPRYLAPSAAKRYEGIKDTGVRARLNLNPPGAKADGGGGVHEVGFYHLHKDGVDWVFVDHISYHREGTPYGNAAGTYGDNLFRFSLLCMAACEAPLLLHVGGHRYGTPPGLPYGQNVTFIANDWHAGLVPVYVAAKYRRHGVYREARCVLALHNLAHQGAHPPRTFNSLGLPGEWYGALEWRVPTINIMKAAMVTSDKLVTVSPAYAWEVCDDKGEQVRASGSAAAYRMDLRVPPVPRDGVLPNASTGASCRIHTARRTTKRRSRPRRPPSPQTCGRTERLGGERGLGAGAGRGREGMLTQPAGGGLGWVCNSVHTHTHVLHLPASSIPHPPAHRILAASDILLMPSRFEPCGLNQMYAMRYGTVPVAHGTGGLRDTIDDVNPFRGEGFRATRRDLGTGWTFAPASEEALLDAVSAALQIYERHPDKWRRIQLAGMRRDFSWGRAARQWESVIETVVAAPTYSK", "cigar": "1720D2M1306D3M560D2M733D11M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MD10M24D2M5D4M2D7M3D13M7DM6D10M15D18M12D3M14D11M3DM7D3M24D3M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D2M16D11M6D16MD3M46D5M17D6M6D4M25D19MD5M8D12M24D7M3D7M2D6M198D2M17DM30D5M12DMD4M2D6M8D2M6D32M3D9M11D6M17D10M33D11M4D11M6D8MDMD2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM6D2M20D3M7D4M183DM13DM1408DM336D", "taxon_id": 3055, "taxon_name": "Chlamydomonas reinhardtii", "assembly": "v3.1", "representative": { "id": "CHLREDRAFT_120082", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 10, "end": 261, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 380, "end": 469, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 88, 161, 204, 227, 236, 301, 324, 358, 436, 437 ] }, { "node_id": 425715, "distance_to_parent": 0.257998, "left_index": 7, "right_index": 8, "protein_stable_id": "EDO99379", "gene_stable_id": "CHLREDRAFT_205622", "gene_description": "Soluble starch synthase", "sequence": "MLLQSGRPVPSAQARALRRAAVQSARPCRVIPGGRSAVRADAAAAIASPAVAVEEALPGIETTHDKNVHGTAGSVVVEQPGLKRASTLRNIMFVTSEVAPWSKTGGLADVLGSLPFALAERGHRVMVVSPRWLLGHAEVRPTGGREWARERAVKFGGGKGEVGYFHQQIKGVDFVFVDHPSYPRPGGIYSDANGVYGDNQIEAVVQAESSVPKTKYGQDIMFVANDWHTSLIPVYLAAKYRPHGVYGNARAILAIHNLRHQGVFPPYTYESLGLPPHWYGCLEWQYPPHQRQGSWAEEGRSVNHLKAGLTTADRVVTVSAGYAEEIKTYLGGWGMEGIIAARDPVLNGIVNGIDTDEWNPSIDPHLPATYDATNFVEGKAKCKMELQRELGLPVNEHIPLVAFIGRLDPQKGADILLEVRGFVAIYGNKDLEDGLRWLEAEFKDRARGWVGFNVPFSHKLTAAADILLMPSRFEPCGLNQLYAMRYGAVAVGHKTGGLRDTVLDFNPWAQEGTGWTYTSCDAQGLLHAVGVALLTYNNHKEDFRKLQLRGMAREASWDGAAQQYEQIIDWAFMDPPYCR", "cigar": "435DM91D4M870D4M37D2M276D2M89D8M34D4MD3M14D2M13D8M22D2M142D2M586D6M933DM45D10M10D8M17D7M23D6M5D4M64D3M530D13M27D2M4DM38DM6DM80D9M21D8M20DM2DM45D12M2D12M39D2M2D6MDM33D2M5D4M2D7M3D13M7DM6D10M15D8M6D4M12D2M26D7M32D2M7DMD4MD15M3D4M2D2MD9M3D7M3DM68D16M11D3MD7M18D13M3D13M6D16MD5M6D10M7D14MD10M21D3M6D4M25D2M13D4MD5M8D5M4D3M24D7M4D6M2D6M132D4M23DM26DM2DM6D4M17DM30D5M12D6M2D8MDM2DMD2M6D7M16D9M3D9M11D6M17D10M33D11M4D9M12D2M5D2M12D5M7D4M8DM7DM20D4M13D4M15DM28D3M34D5MDM15D2M52D5M10D2M17D4M4DM8DM16DM3DM4D2M12DMD4M3DM7DM225DM13DMDM271D3MDM317DM171DM9D3M965D", "taxon_id": 3055, "taxon_name": "Chlamydomonas reinhardtii", "assembly": "v3.1", "representative": { "id": "CHLREDRAFT_205622", "score": -100 }, "domains": [ { "id": "IPR013534", "root": 13534, "start": 90, "end": 340, "name": "Starch_synth_cat_dom", "description": "Starch synthase, catalytic domain" }, { "id": "IPR001296", "root": 1296, "start": 395, "end": 529, "name": "Glyco_trans_1", "description": "Glycosyl transferase, family 1" } ], "exon_junctions": [ 29, 97, 132, 161, 200, 261, 278, 306, 356, 387, 426, 457, 485, 523, 547 ] } ], "representative": { "id": "CHLREDRAFT_205622", "score": -99.742002 } } ], "representative": { "id": "AT5G24300", "score": -173.925486 } } ], "representative": { "id": "AT3G01180", "score": -174.142526 } } ], "representative": { "id": "AT3G01180", "score": -174.072358 } } ], "representative": { "id": "AT3G01180", "score": -173.90128 } } ], "representative": { "id": "AT3G01180", "score": -173.90128 }, "compara_db": "ensembl_compara_plants_53_88" } ]