export enum CopyNumberEnrichmentEventType {
    HOMDEL = 'HOMDEL',
    AMP = 'AMP',
}

export enum MutationEnrichmentEventType {
    missense_mutation = 'missense_mutation',
    missense = 'missense',
    missense_variant = 'missense_variant',
    frame_shift_ins = 'frame_shift_ins',
    frame_shift_del = 'frame_shift_del',
    frameshift = 'frameshift',
    frameshift_deletion = 'frameshift_deletion',
    frameshift_insertion = 'frameshift_insertion',
    de_novo_start_outofframe = 'de_novo_start_outofframe',
    frameshift_variant = 'frameshift_variant',
    nonsense_mutation = 'nonsense_mutation',
    nonsense = 'nonsense',
    stopgain_snv = 'stopgain_snv',
    stop_gained = 'stop_gained',
    splice_site = 'splice_site',
    splice = 'splice',
    splicing = 'splicing',
    splice_site_snp = 'splice_site_snp',
    splice_site_del = 'splice_site_del',
    splice_site_indel = 'splice_site_indel',
    splice_region_variant = 'splice_region_variant',
    splice_region = 'splice_region',
    translation_start_site = 'translation_start_site',
    initiator_codon_variant = 'initiator_codon_variant',
    start_codon_snp = 'start_codon_snp',
    start_codon_del = 'start_codon_del',
    nonstop_mutation = 'nonstop_mutation',
    stop_lost = 'stop_lost',
    inframe_del = 'inframe_del',
    inframe_deletion = 'inframe_deletion',
    in_frame_del = 'in_frame_del',
    in_frame_deletion = 'in_frame_deletion',
    inframe_ins = 'inframe_ins',
    inframe_insertion = 'inframe_insertion',
    in_frame_ins = 'in_frame_ins',
    in_frame_insertion = 'in_frame_insertion',
    indel = 'indel',
    nonframeshift_deletion = 'nonframeshift_deletion',
    nonframeshift = 'nonframeshift',
    nonframeshift_insertion = 'nonframeshift_insertion',
    targeted_region = 'targeted_region',
    inframe = 'inframe',
    truncating = 'truncating',
    feature_truncation = 'feature_truncation',
    fusion = 'fusion',
    silent = 'silent',
    synonymous_variant = 'synonymous_variant',
    any = 'any',
    other = 'other',
}

// Groups according to GitHub issue #8107 dd. December 2020
// https://github.com/cBioPortal/cbioportal/issues/8107)

export const missenseGroup = [
    MutationEnrichmentEventType.missense,
    MutationEnrichmentEventType.missense_mutation,
    MutationEnrichmentEventType.missense_variant,
];

export const inframeDeletionGroup = [
    MutationEnrichmentEventType.inframe_del,
    MutationEnrichmentEventType.inframe_deletion,
    MutationEnrichmentEventType.in_frame_del,
    MutationEnrichmentEventType.in_frame_deletion,
    MutationEnrichmentEventType.nonframeshift_deletion,
];

export const inframeInsertionGroup = [
    MutationEnrichmentEventType.inframe_ins,
    MutationEnrichmentEventType.inframe_insertion,
    MutationEnrichmentEventType.in_frame_ins,
    MutationEnrichmentEventType.in_frame_insertion,
    MutationEnrichmentEventType.nonframeshift_insertion,
];

export const inframeGroup = [
    MutationEnrichmentEventType.indel,
    MutationEnrichmentEventType.nonframeshift,
    MutationEnrichmentEventType.inframe,
    ...inframeDeletionGroup,
    ...inframeInsertionGroup,
];

export const nonsenseGroup = [
    MutationEnrichmentEventType.nonsense_mutation,
    MutationEnrichmentEventType.nonsense,
    MutationEnrichmentEventType.stopgain_snv,
    MutationEnrichmentEventType.stop_gained,
];

export const frameshiftInsertionGroup = [
    MutationEnrichmentEventType.frame_shift_ins,
    MutationEnrichmentEventType.frameshift_insertion,
];

export const frameshiftDeletionGroup = [
    MutationEnrichmentEventType.frame_shift_del,
    MutationEnrichmentEventType.frameshift_deletion,
];

export const frameshiftGroup = [
    MutationEnrichmentEventType.frameshift,
    MutationEnrichmentEventType.frameshift_variant,
    ...frameshiftDeletionGroup,
    ...frameshiftInsertionGroup,
];

export const nonstartGroup = [
    MutationEnrichmentEventType.translation_start_site,
    MutationEnrichmentEventType.initiator_codon_variant,
    MutationEnrichmentEventType.start_codon_snp,
    MutationEnrichmentEventType.start_codon_del,
    MutationEnrichmentEventType.de_novo_start_outofframe,
];

export const nonstopGroup = [
    MutationEnrichmentEventType.nonstop_mutation,
    MutationEnrichmentEventType.stop_lost,
];

export const spliceGroup = [
    MutationEnrichmentEventType.splice_site,
    MutationEnrichmentEventType.splice,
    MutationEnrichmentEventType.splicing,
    MutationEnrichmentEventType.splice_site_snp,
    MutationEnrichmentEventType.splice_site_del,
    MutationEnrichmentEventType.splice_site_indel,
    MutationEnrichmentEventType.splice_region_variant,
    MutationEnrichmentEventType.splice_region,
];

export const truncationGroup = [
    MutationEnrichmentEventType.truncating,
    MutationEnrichmentEventType.feature_truncation,
    ...nonsenseGroup,
    ...frameshiftGroup,
    ...nonstartGroup,
    ...nonstopGroup,
    ...spliceGroup,
];

export const otherGroup = [
    MutationEnrichmentEventType.silent,
    MutationEnrichmentEventType.synonymous_variant,
    MutationEnrichmentEventType.targeted_region,
    MutationEnrichmentEventType.any,
    MutationEnrichmentEventType.other,
];

export const fusionGroup = [MutationEnrichmentEventType.fusion];

export const mutationGroup = [
    ...missenseGroup,
    ...inframeGroup,
    ...truncationGroup,
    ...otherGroup,
];

export const amplificationGroup = [CopyNumberEnrichmentEventType.AMP];

export const deletionGroup = [CopyNumberEnrichmentEventType.HOMDEL];

export const cnaGroup = [...amplificationGroup, ...deletionGroup];