Organizes the parsed source-code data into a single object that takes the following form:

organ = {

    // There will always be a root node with an absolute ID of "root"
    id : "root",
    name : "root",
    file : "root.html",
    docfile : "root.html",

    packages : [

            { 
                packages : foo

                // Classes included in this package
                classes : [

                    {   
                        class : "foo"
                        methods : [],
                        properties : [],
                        events : []
                    },

                    ... etc ... 
                ],

                // Loose stuff found in this package
                methods : [],
                properties : [],
                events : []
            }

    ],

    // Independent classes that are not part of any package
    classes : [
        {   
            class : "foo"
            methods : [],
            properties : [],
            events : []
        }
        ... etc ... 
    ],

    // Loose stuff that's not part of any package or class, assumed to be accessible "this" (e.g. in javascript it would be the "window" scope)
    methods : [],
    properties : [],
    events : [],

};

All source code hangs off of the "root" node and is organized according it's relationship to a package or class.

This organizer is initialized prior to parsing source code, and as each file is parsed, it is added to the organizer. After all the source-code is finished parsing, the organizer wires up adn cross references inheritance.