/**
 * Shared context for command modules
 *
 * This module provides shared utilities and state that command modules need.
 */
import chalk from 'chalk';
import * as fs from 'fs';
import * as path from 'path';
import * as fmt from '../format.js';
export declare let quietMode: boolean;
export declare let jsonMode: boolean;
export declare function setQuietMode(value: boolean): void;
export declare function setJsonMode(value: boolean): void;
export declare function jsonOutput(data: unknown): void;
export declare function findFiles(ext: string, cwd?: string): string[];
export { chalk, fs, path, fmt };
export { parseAnnotations, stripAnnotations, countAnnotations, getComments, setCommentStatus, hasAnnotations, getTrackChanges, applyDecision, cleanupOrphanedMarkers, } from '../annotations.js';
export { interactiveReview, listComments, interactiveCommentReview, } from '../review.js';
export { generateConfig, loadConfig, saveConfig, matchHeading, extractSectionsFromText, splitAnnotatedPaper, getOrderedSections, } from '../sections.js';
export { buildRegistry, detectHardcodedRefs, convertHardcodedRefs, getRefStatus, formatRegistry, } from '../crossref.js';
export { build, loadConfig as loadBuildConfig, formatBuildResults, } from '../build.js';
export { hasPandoc, hasPandocCrossref, hasLatex, checkDependencies, getInstallInstructions, } from '../dependencies.js';
export { getTemplate, listTemplates, generateCustomTemplate, } from '../templates.js';
export { getUserName, setUserName, getConfigPath, getDefaultSections, setDefaultSections, loadUserConfig, saveUserConfig, } from '../config.js';
export { inlineDiffPreview } from '../format.js';
export { countWords } from '../utils.js';
export { parseCommentsWithReplies, collectComments, generateResponseLetter, groupByReviewer, } from '../response.js';
export { validateCitations, getCitationStats, } from '../citations.js';
export { extractEquations, getEquationStats, createEquationsDoc, extractEquationsFromWord, getWordEquationStats, } from '../equations.js';
export { parseBibEntries, checkBibDois, fetchBibtex, addToBib, isValidDoiFormat, lookupDoi, lookupMissingDois, } from '../doi.js';
export { clearDoiCache, getDoiCacheStats, } from '../doi-cache.js';
export { formatError, getFileNotFoundSuggestions, getDependencySuggestions, getAnnotationSuggestions, getBuildSuggestions, exitWithError, requireFile, } from '../errors.js';
export { listJournals, getJournalProfile, validateManuscript, validateProject, } from '../journals.js';
export { listCustomProfiles, saveProfileTemplate, getPluginDirs, } from '../plugins.js';
export { tuiCommentReview } from '../tui.js';
//# sourceMappingURL=context.d.ts.map