import { CommandInputParameter } from "../../mappings/d2sb/CommandInputParameter";
import { CommandLineBinding } from "../../mappings/d2sb/CommandLineBinding";
import { CommandLineTool } from "../../mappings/d2sb/CommandLineTool";
import { CommandOutputParameter } from "../../mappings/d2sb/CommandOutputParameter";
import { Expression } from "../../mappings/d2sb/Expression";
import { ProcessRequirement } from "../../mappings/d2sb/ProcessRequirement";
import { CommandLineToolModel } from "../generic/CommandLineToolModel";
import { ProcessRequirementModel } from "../generic/ProcessRequirementModel";
import { RequirementBaseModel } from "../generic/RequirementBaseModel";
import { Serializable } from "../interfaces/Serializable";
import { SBDraft2CommandArgumentModel } from "./SBDraft2CommandArgumentModel";
import { SBDraft2CommandInputParameterModel } from "./SBDraft2CommandInputParameterModel";
import { SBDraft2CommandOutputParameterModel } from "./SBDraft2CommandOutputParameterModel";
import { SBDraft2CreateFileRequirementModel } from "./SBDraft2CreateFileRequirementModel";
import { SBDraft2ExpressionModel } from "./SBDraft2ExpressionModel";
import { SBDraft2ResourceRequirementModel } from "./SBDraft2ResourceRequirementModel";
import { EnvironmentDef } from "../../mappings/v1.0";
import { EnvironmentDefModel } from "../generic/EnvVarRequirementModel";
export declare class SBDraft2CommandLineToolModel extends CommandLineToolModel implements Serializable<CommandLineTool> {
    cwlVersion: string;
    baseCommand: Array<SBDraft2ExpressionModel>;
    inputs: Array<SBDraft2CommandInputParameterModel>;
    outputs: Array<SBDraft2CommandOutputParameterModel>;
    resources: SBDraft2ResourceRequirementModel;
    requirements: Array<ProcessRequirementModel>;
    fileRequirement: SBDraft2CreateFileRequirementModel;
    hints: Array<ProcessRequirementModel>;
    arguments: Array<SBDraft2CommandArgumentModel>;
    stdin: SBDraft2ExpressionModel;
    stdout: SBDraft2ExpressionModel;
    hasStdErr: boolean;
    constructor(json?: CommandLineTool, loc?: string);
    setRuntime(runtime?: any): void;
    /**
     * Returns the context object for expressions in supplied port
     * @param port
     * @returns {{$job?: {inputs?: any; allocatedResources?: any}; $self?: any}}
     */
    getContext(port?: any): {
        $job?: {
            inputs?: any;
            allocatedResources?: any;
        };
        $self?: any;
    };
    /**
     * Resets job value to dummy values
     */
    resetJobDefaults(): void;
    addHint(hint?: ProcessRequirement | any): RequirementBaseModel;
    addBaseCommand(cmd?: Expression | string | number): SBDraft2ExpressionModel;
    updateBaseCommand(cmd: SBDraft2ExpressionModel[]): void;
    addArgument(arg?: string | CommandLineBinding): SBDraft2CommandArgumentModel;
    addInput(input?: CommandInputParameter): SBDraft2CommandInputParameterModel;
    addOutput(output: CommandOutputParameter): SBDraft2CommandOutputParameterModel;
    createEnvVariable(env: EnvironmentDef, type: "expression" | "string"): EnvironmentDefModel;
    setRequirement(req: ProcessRequirement, hint?: boolean): void;
    updateStream(stream: SBDraft2ExpressionModel, type: "stdin" | "stdout"): void;
    private createReq(req, loc, hint?);
    deserialize(tool: CommandLineTool): void;
    serialize(): CommandLineTool | any;
}