## 🔬 Science & Research

Servers accessing scientific databases, research platforms, or providing tools for scientific computation/simulation.

- [GreatApo/concrete-properties-mcp](https://github.com/GreatApo/concrete-properties-mcp): Facilitates AI-driven analysis of reinforced concrete sections by providing a unified API interface for calculating geometric and material properties.
- [GooTec/NCBI-MCP](https://github.com/GooTec/NCBI-MCP): Facilitates access to NCBI Datasets through a modular MCP server with OpenAPI-driven endpoints for genome, gene, and taxonomy data.
- [leelasd/molecule_mcp](https://github.com/leelasd/molecule_mcp): Facilitates chemistry-focused applications by visualizing molecules and retrieving molecular properties using SMILES codes, integrated with LLMs like Claude Desktop.
- [RLabs-Inc/ios-forensics-mcp](https://github.com/RLabs-Inc/ios-forensics-mcp): Facilitates forensic analysis of iOS file systems, enabling AI assistants to explore and report on digital artifacts.
- [koido/liftover-mcp](https://github.com/koido/liftover-mcp): Facilitates genomic coordinate conversion using the Broad Institute's Liftover tool via a programmatic interface.
- [Rkm1999/CelestialMCP](https://github.com/Rkm1999/CelestialMCP): CelestialMCP offers precise astronomical calculations for celestial object positions and rise/set times, integrating seamlessly with Claude AI.
- [simpolism/AstroMCP](https://github.com/simpolism/AstroMCP): AstroMCP provides AI assistants with astrological chart functionality, integrating seamlessly via the Model Context Protocol.
- [Nicolassaint/mathsIA_API](https://github.com/Nicolassaint/mathsIA_API): MathsIA API integrates FastAPI-MCP to enable AI models to manage a flashcard system for math learning, offering features for user management and progress tracking.
- [Xinruims/my_experiment](https://github.com/Xinruims/my_experiment): Enhance Roo Code with MCP server implementations for AI-driven coding tools, offering seamless integration and configuration across platforms.
- [liuyixin-louis/ArxivMCP](https://github.com/liuyixin-louis/ArxivMCP): Facilitates academic paper searches on arXiv with MCP client integration for seamless retrieval.
- [wildsonbbl/gnnepcsaft_mcp_server](https://github.com/wildsonbbl/gnnepcsaft_mcp_server): Facilitates communication and context management for GNNePCSAFT tools using the Model Context Protocol.
- [milatechtransfer/paperpal](https://github.com/milatechtransfer/paperpal): Enhance your literature review process by integrating LLMs with access to arXiv, Hugging Face papers, and Semantic Scholar.
- [rperezll/mcp-lab](https://github.com/rperezll/mcp-lab): A personal lab exploring the Model Context Protocol SDK in TypeScript, featuring basic and advanced implementations like a Text-to-SQL server.
- [falahgs/Brave-Gemini-Research-MCP-Server](https://github.com/falahgs/Brave-Gemini-Research-MCP-Server): Empowers AI assistants with web search and research paper analysis using Brave Search API and Google's Gemini model.
- [Orthogonalpub/modelica_simulation_mcp_server](https://github.com/Orthogonalpub/modelica_simulation_mcp_server): Facilitates Modelica model simulations, enabling LLMs to execute and manage Modelica-related tasks.
- [ytworks/openMM-Doc-MCP](https://github.com/ytworks/openMM-Doc-MCP): Facilitates semantic search through OpenMM molecular dynamics documentation using vector embeddings and FAISS for efficient retrieval, optimized for LLM integration.
- [arrismo/kaggle-mcp](https://github.com/arrismo/kaggle-mcp): Facilitates interaction with Kaggle by providing tools for dataset search, download, and EDA notebook generation via the Model Context Protocol.
- [mila-iqia/paperpal](https://github.com/mila-iqia/paperpal): Enhance your literature review process by integrating LLMs with arXiv and Hugging Face papers for seamless paper discussions and organization.
- [huang-sh/scanpy-mcp](https://github.com/huang-sh/scanpy-mcp): Facilitates natural language-driven scRNA-Seq analysis using Scanpy, enabling seamless integration with AI clients and agent frameworks.
- [datalayer/jupyter-earth-mcp-server](https://github.com/datalayer/jupyter-earth-mcp-server): Facilitates geospatial analysis in Jupyter notebooks by integrating NASA Earthdata with Model Context Protocol.
- [fdmocho/mcp_server_nasa](https://github.com/fdmocho/mcp_server_nasa): Facilitates integration with NASA's Near Earth Object API, enabling date-specific data retrieval through an MCP server setup.
- [hiyenwong/arxiv_mcp](https://github.com/hiyenwong/arxiv_mcp): Facilitates the search and interpretation of academic papers from arXiv using MCP technology.
- [demouth/learn-mcp-server](https://github.com/demouth/learn-mcp-server): A simple MCP server implementation for educational purposes, supporting basic arithmetic operations and integration with Claude Desktop.
- [Codeshark-NET/climate-triage-mcp](https://github.com/Codeshark-NET/climate-triage-mcp): Integrates with the ClimateTriage API to facilitate searching for open source issues related to climate change and sustainability.
- [chcharcharlie/10XResearcher](https://github.com/chcharcharlie/10XResearcher): 10XResearcher enhances Claude into a systematic research agent with local data storage, enabling iterative research methodologies and high-quality outcomes.
- [takashiishida/arxiv-latex-mcp](https://github.com/takashiishida/arxiv-latex-mcp): Facilitates precise interpretation of mathematical expressions in arXiv papers by processing LaTeX sources for Claude Desktop.
- [JackKuo666/PubChem-MCP-Server](https://github.com/JackKuo666/PubChem-MCP-Server): Facilitates AI-driven searches and retrieval of chemical compound data from PubChem via a streamlined MCP interface.
- [HuaLuAI/CAD-MCP](https://github.com/HuaLuAI/CAD-MCP): CAD-MCP enables natural language-driven CAD operations across multiple software platforms, streamlining drawing tasks through intuitive text commands.
- [danimal141/arxiv-search-mcp](https://github.com/danimal141/arxiv-search-mcp): Facilitates searching and retrieving academic papers from arXiv.org with customizable parameters.
- [sebastien-le-paris/project-rules](https://github.com/sebastien-le-paris/project-rules): Facilitates the integration of external tools and data sources with Cursor through the Model Context Protocol, enhancing AI project rule management and tool execution.
- [openags/paper-search-mcp](https://github.com/openags/paper-search-mcp): Facilitates seamless academic paper search and download from multiple sources, enhancing LLM workflows with MCP integration.
- [CoderiGenius/math-all-mcp](https://github.com/CoderiGenius/math-all-mcp): Facilitates precise mathematical computations via SSE for seamless integration with large language models.
- [Darkroaster/pubmearch](https://github.com/Darkroaster/pubmearch): Facilitates rapid insights into medical research dynamics through advanced PubMed literature analysis.
- [cnosuke/mcp-wolfram-alpha](https://github.com/cnosuke/mcp-wolfram-alpha): Facilitates high-precision computational queries and scientific data retrieval via Wolfram Alpha API for LLMs.
- [Kryzo/mcp-europeana](https://github.com/Kryzo/mcp-europeana): Generate comprehensive research documents using Europeana's digital library sources, integrating with AI tools via MCP.
- [ANewProfile/gbif-custom-mcp](https://github.com/ANewProfile/gbif-custom-mcp): Facilitates access to GBIF datasets via MCP servers, integrating with Claude Desktop for enhanced LLM context and BigQuery data retrieval.
- [GDAmitha/chimerax-alphafold-mcp](https://github.com/GDAmitha/chimerax-alphafold-mcp): ChimeraX-AlphaFold-MCP facilitates seamless integration between ChimeraX, AlphaFold, and Claude AI, enabling advanced molecular visualization and structural analysis through natural language commands.
- [vitamin3615/uniprot-mcp-server](https://github.com/vitamin3615/uniprot-mcp-server): Facilitates language models in retrieving protein data from the UniProt database, supporting integration with Claude Desktop and other MCP-compatible AI applications.
- [tis-abe-akira/mcp-study](https://github.com/tis-abe-akira/mcp-study): A TypeScript-based MCP server offering a whimsical cowsay interface with random responses and multiple character modes.
- [podaac/cmr-mcp](https://github.com/podaac/cmr-mcp): Integrates AI retrievals with NASA's Earthdata Catalog using the Model Context Protocol.
- [djalal/quran-mcp-server](https://github.com/djalal/quran-mcp-server): Facilitates interaction with the Quran.com API for verse search, translation, and tafsir through an MCP server.
- [KunihiroS/google-patents-mcp](https://github.com/KunihiroS/google-patents-mcp): Facilitates Google Patents searches using SerpApi through an MCP server interface.
- [jkingsman/qanon-mcp-server](https://github.com/jkingsman/qanon-mcp-server): Facilitates sociological research by providing AI-driven access to a dataset of Q-Anon posts for analysis and exploration.
- [hogyzen12/lernean-lens](https://github.com/hogyzen12/lernean-lens): Facilitates collaborative reverse engineering of Solana binaries using Ghidra with MCP and eBPF extensions, integrating with Claude Desktop.
- [oOo0oOo/lean-lsp-mcp](https://github.com/oOo0oOo/lean-lsp-mcp): Facilitates agentic interaction with the Lean theorem prover using the Language Server Protocol.
- [wheattoast11/openrouter-deep-research-mcp](https://github.com/wheattoast11/openrouter-deep-research-mcp): Orchestrates AI-powered research using Claude and various OpenRouter models for comprehensive and adaptive research capabilities.
- [jerpint/paperpal](https://github.com/jerpint/paperpal): Facilitates literature reviews by integrating LLMs with arXiv and Hugging Face papers for seamless paper discussions and organization.
- [HappyAny/latex-mathml-mcp-server](https://github.com/HappyAny/latex-mathml-mcp-server): Converts LaTeX mathematical expressions to MathML format using a lightweight MCP server implementation.
- [pathintegral-institute/mcp-servers](https://github.com/pathintegral-institute/mcp-servers): Open source MCP servers designed to facilitate scientific research through customizable server configurations and tool integrations.
- [botanicastudios/crossref-mcp](https://github.com/botanicastudios/crossref-mcp): Facilitates seamless interaction with the Crossref API, enabling searches by title, author, and DOI retrieval.
- [JackKuo666/semanticscholar-MCP-Server](https://github.com/JackKuo666/semanticscholar-MCP-Server): Facilitates interaction with the Semantic Scholar API, enabling paper searches, author details retrieval, and citation management.
- [adamrtalbot/mcp-nextflow](https://github.com/adamrtalbot/mcp-nextflow): Facilitates Nextflow development and testing with a suite of tools for building, testing, and managing Nextflow environments.
- [JackKuo666/Sci-Hub-MCP-Server](https://github.com/JackKuo666/Sci-Hub-MCP-Server): Facilitates AI-driven access and analysis of academic papers via Sci-Hub using an MCP interface.
- [halllo/McpExperiments](https://github.com/halllo/McpExperiments): A dotnet MCP server and client setup for local LLM integration, featuring time retrieval and OAuth server middleware experiments.
- [reading-plus-ai/mcp-server-deep-research](https://github.com/reading-plus-ai/mcp-server-deep-research): Facilitates in-depth research by transforming questions into structured, well-cited reports using an MCP server.
- [YuChenSSR/symbolica-mcp](https://github.com/YuChenSSR/symbolica-mcp): Facilitates symbolic computation and quantum computing analysis within a containerized environment, integrating with AI for scientific and engineering applications.
- [YuChenSSR/quantum-simulator-mcp](https://github.com/YuChenSSR/quantum-simulator-mcp): A Docker-based quantum circuit simulator implementing MCP for seamless integration with clients like Claude, featuring noise models and OpenQASM 2.0 support.
- [Ray0907/mcp-arxiv](https://github.com/Ray0907/mcp-arxiv): Facilitates seamless academic paper search and retrieval from arXiv for LLMs, bypassing complex HTML parsing.
- [tejpalvirk/quantitativeresearch](https://github.com/tejpalvirk/quantitativeresearch): Facilitates the management of quantitative research knowledge graphs, enabling structured representation and analysis of research data, hypotheses, and results.
- [tejpalvirk/qualitativeresearch](https://github.com/tejpalvirk/qualitativeresearch): Facilitates the management of qualitative research knowledge graphs, enabling structured representation and analysis of research data.
- [zhaoyouj/mcp-slicer](https://github.com/zhaoyouj/mcp-slicer): Facilitates seamless interaction between 3D Slicer and model clients for medical image processing and scene manipulation using natural language.
- [egtai/gmx-vmd-mcp](https://github.com/egtai/gmx-vmd-mcp): Facilitates molecular dynamics simulations and visualization by integrating GROMACS with VMD through a microservice architecture.
- [clssck/researcher-mcp](https://github.com/clssck/researcher-mcp): A research assistant server that integrates with Cline and Claude Desktop, utilizing Perplexity AI for intelligent search, documentation retrieval, API discovery, and code modernization assistance.
- [dexhunter/kaggle-mcp](https://github.com/dexhunter/kaggle-mcp): Facilitates interaction with Kaggle APIs through a Model Context Protocol server, enabling note management and client notifications.
- [JackKuo666/Google-Scholar-MCP-Server](https://github.com/JackKuo666/Google-Scholar-MCP-Server): Facilitates AI-driven academic research by enabling seamless access to Google Scholar papers and author information through a Model Context Protocol interface.
- [jzhang17/prospect-research-mcp](https://github.com/jzhang17/prospect-research-mcp): A specialized MCP server for prospect research, offering semantic search, webpage scraping, and batch search processing on the Smithery Web infrastructure.
- [jbdamask/mcp-nih-reporter](https://github.com/jbdamask/mcp-nih-reporter): Facilitates conversational searches of NIH-funded research projects and publications via the NIH RePORTER API.
- [JackKuo666/PubMed-MCP-Server](https://github.com/JackKuo666/PubMed-MCP-Server): Facilitates AI-driven search and analysis of PubMed articles through a streamlined MCP interface.
- [vrtejus/pymol-mcp](https://github.com/vrtejus/pymol-mcp): PyMOL-MCP enables seamless integration of PyMOL with Claude AI for interactive molecular visualization and analysis through natural language commands.
- [edwardpwtsoi/mathjs-mcp](https://github.com/edwardpwtsoi/mathjs-mcp): Facilitates mathematical calculations and derivative computations using MathJS.
- [PhelanShao/pubchem-mcp-server](https://github.com/PhelanShao/pubchem-mcp-server): Facilitates AI-driven queries to the PubChem database for comprehensive chemical compound data retrieval.
- [husqvaluna/spike-symbol-mcp-server](https://github.com/husqvaluna/spike-symbol-mcp-server): A Symbol MCP server facilitating integration with Symbol's open API for streamlined communication and data handling.
- [JackKuo666/medRxiv-MCP-Server](https://github.com/JackKuo666/medRxiv-MCP-Server): Facilitates AI-driven searches and access to medRxiv preprints, enhancing research capabilities in health sciences.
- [JackKuo666/bioRxiv-MCP-Server](https://github.com/JackKuo666/bioRxiv-MCP-Server): Facilitates AI-driven searches and metadata retrieval of bioRxiv preprints through a streamlined MCP interface.
- [goern/bundestag-mcp](https://github.com/goern/bundestag-mcp): Facilitates interaction with German Bundestag protocols through a Model Context Protocol server.
- [khigashi1987/biopaper-mcp-search](https://github.com/khigashi1987/biopaper-mcp-search): Facilitates advanced search and analysis of biology papers using Europe PMC API, integrated with Claude Desktop for a comprehensive research assistant experience.
- [lutzcc1/bonsai-mcp](https://github.com/lutzcc1/bonsai-mcp): Facilitates search queries on indexed data using Bonsai's Search cluster, enabling LLMs like Claude to perform efficient searches.
- [suthio/brave-deep-research-mcp](https://github.com/suthio/brave-deep-research-mcp): Enhances Brave Search with Puppeteer-powered content extraction for comprehensive web research, allowing AI assistants to access detailed information beyond standard search results.
- [riemannzeta/patent_mcp_server](https://github.com/riemannzeta/patent_mcp_server): Facilitates access to USPTO patent data through APIs, enabling integration with Claude Desktop for efficient patent search and retrieval.
- [ProgramComputer/NASA-MCP-server](https://github.com/ProgramComputer/NASA-MCP-server): Facilitates AI model interactions with NASA's extensive data sources through a standardized interface.
- [ameeralns/DeepResearchMCP](https://github.com/ameeralns/DeepResearchMCP): DeepResearch MCP is an intelligent research assistant that conducts iterative research and generates comprehensive reports using the Model Context Protocol.
- [huanongfish/simple-pubmed](https://github.com/huanongfish/simple-pubmed): Access PubMed articles via the Entrez API, offering keyword search, abstracts, and full text for open access articles.
- [huanongfish/arxiv-mcp](https://github.com/huanongfish/arxiv-mcp): Facilitates AI-driven searches and access to arXiv papers via a streamlined MCP interface.
- [huanongfish/pubmedmcp](https://github.com/huanongfish/pubmedmcp): Facilitates searching and retrieving biomedical literature from PubMed using MCP server capabilities.
- [datalayer/earthdata-mcp-server](https://github.com/datalayer/earthdata-mcp-server): Facilitates efficient dataset discovery and retrieval from NASA Earth Data for geospatial analysis.
- [JoshuaLelon/deep-research-mcp](https://github.com/JoshuaLelon/deep-research-mcp): A multi-agent research framework utilizing Python and MCP, featuring a FastMCP server for orchestrating AI agents in research tasks.
- [KYBvWHxW/mcp-servers](https://github.com/KYBvWHxW/mcp-servers): A versatile MCP server system featuring specialized servers for basic algorithms, quantum simulation, neuromorphic computing, and entropy-associated memory.
- [Cam10001110101/mcp-server-ollama-deep-researcher](https://github.com/Cam10001110101/mcp-server-ollama-deep-researcher): Empowers AI assistants to conduct in-depth research using local LLMs through an iterative process of web search, summarization, and reflection.
- [nguyenvanduocit/research-kit](https://github.com/nguyenvanduocit/research-kit): Research Kit enhances AI model capabilities by integrating with development tools like Jira and GitLab, automating workflows and managing documentation through natural language interactions.
- [GreatAuk/mcp-weather](https://github.com/GreatAuk/mcp-weather): A TypeScript starter template for building production-ready MCP servers with tools for fast development and automated version management.
- [h-yanagawa/research-mcp-server](https://github.com/h-yanagawa/research-mcp-server): Facilitates survey data retrieval and page creation in Notion through an MCP server.
- [nahmanmate/code-research-mcp-server](https://github.com/nahmanmate/code-research-mcp-server): A Model Context Protocol server that facilitates the search and retrieval of programming resources from multiple developer platforms, enhancing LLM capabilities.
- [DaInfernalCoder/perplexity-mcp](https://github.com/DaInfernalCoder/perplexity-mcp): A research and documentation assistant leveraging Perplexity AI for intelligent query complexity detection and model routing.
- [bmorphism/anti-bullshit-mcp-server](https://github.com/bmorphism/anti-bullshit-mcp-server): Analyzes claims, validates sources, and detects manipulation using diverse epistemological frameworks.
- [qpd-v/mcp-DEEPwebresearch](https://github.com/qpd-v/mcp-DEEPwebresearch): An advanced MCP server designed for deep web research, featuring intelligent search queuing, enhanced content extraction, and real-time integration with Claude.
- [adityak74/mcp-scholarly](https://github.com/adityak74/mcp-scholarly): Facilitates precise academic article searches through an MCP server with Arxiv integration.
- [blake365/usgs-quakes-mcp](https://github.com/blake365/usgs-quakes-mcp): Facilitates natural language queries to access USGS Earthquake data via Claude Desktop.
- [Jacck/mcp-ortools](https://github.com/Jacck/mcp-ortools): Integrates Google's OR-Tools with Large Language Models for solving constraint satisfaction and optimization problems.
- [lenwood/cfbd-mcp-server](https://github.com/lenwood/cfbd-mcp-server): Enables AI assistants to query and analyze comprehensive college football statistics using the CFBD API within Claude Desktop.
- [andybrandt/mcp-simple-pubmed](https://github.com/andybrandt/mcp-simple-pubmed): Facilitates access to PubMed articles via the Entrez API, enabling keyword searches and retrieval of abstracts and full texts for open access articles.
- [andybrandt/mcp-simple-arxiv](https://github.com/andybrandt/mcp-simple-arxiv): Facilitates LLMs to search and access scientific papers on arXiv, providing metadata and abstracts through an MCP server.
- [blazickjp/arxiv-mcp-server](https://github.com/blazickjp/arxiv-mcp-server): Facilitates AI-driven search and analysis of arXiv papers via a streamlined MCP interface.