import { SAMPLE_COLOR_SCALE } from '../utils/color'
import { createDoseResponseTemplate } from './doseResponseBuilder'
import { createPlateMapTemplate } from './plateMapBuilder'
import { createSampleSheetTemplate } from './sampleSheetBuilder'
import { presetSampleRecords } from './sampleNormalizers'
import { createTemplateCollection } from './templateEnvelopes'
import type {
  CreateWellPlateScreenCollectionOptions,
  TemplateCollectionEnvelope,
} from './types'

/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
export function createWellPlateScreenCollection(
  options: CreateWellPlateScreenCollectionOptions = {}
): TemplateCollectionEnvelope {
  const sampleRecords = presetSampleRecords(options.samples ?? ['Control', 'Treatment'])
  const plate = createPlateMapTemplate({
    name: options.plateName ?? 'Screen plate',
    format: options.plateFormat ?? 96,
    samples: sampleRecords.map((sample, index) => ({
      id: sample.sampleId,
      name: sample.name ?? sample.sampleId,
      color: SAMPLE_COLOR_SCALE[index % SAMPLE_COLOR_SCALE.length],
    })),
  })
  const sampleSheet = createSampleSheetTemplate({ samples: sampleRecords })
  const doseResponse = createDoseResponseTemplate({
    compounds: options.compounds ?? { 'Compound A': [10, 1, 0.1] },
    unit: options.unit ?? 'uM',
    replicates: options.replicates ?? 3,
    layout: plate,
  })
  return createTemplateCollection(
    [plate, sampleSheet, doseResponse],
    { preset: 'wellplate-screen', ...(options.metadata ?? {}) }
  )
}