import { getTemplateData } from './templateEnvelopes'
import { validateTimeCourseData } from './templateValidators'
import type {
  TimeCourseColumnsAdapterResult,
  TimeCourseDataFrameAdapterResult,
  TimeCourseRowsAdapterResult,
  TimeCourseStepsAdapterResult,
  TimeCourseTemplate,
  TimeCourseTemplateData,
} from './types'

/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
export function toTimeCourseRows(
  template: TimeCourseTemplate | TimeCourseTemplateData
): TimeCourseRowsAdapterResult {
  const data = getTemplateData(template, 'time-course')
  validateTimeCourseData(data)
  const timepoints = new Map(data.timepoints.map(timepoint => [timepoint.id, timepoint]))
  const conditions = new Map(data.conditions.map(condition => [condition.id, condition]))

  return data.samples.map(sample => {
    const timepoint = timepoints.get(sample.timepointId)
    const condition = conditions.get(sample.conditionId)
    return {
      sampleId: sample.sampleId,
      condition: condition?.name ?? sample.conditionId,
      timepoint: timepoint?.label ?? sample.timepointId,
      value: timepoint?.value,
      unit: timepoint?.unit,
      replicate: sample.replicate,
      ...(sample.metadata ?? {}),
    }
  })
}

/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
export function toTimeCourseColumns(): TimeCourseColumnsAdapterResult {
  return [
    { key: 'sampleId', label: 'Sample ID', sortable: true },
    { key: 'condition', label: 'Condition', sortable: true },
    { key: 'timepoint', label: 'Time Point', sortable: true },
    { key: 'value', label: 'Value', sortable: true, align: 'right' },
    { key: 'unit', label: 'Unit', sortable: true },
    { key: 'replicate', label: 'Replicate', sortable: true, align: 'right' },
  ]
}

/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
export function toTimeCourseDataFrame(
  template: TimeCourseTemplate | TimeCourseTemplateData
): TimeCourseDataFrameAdapterResult {
  return {
    data: toTimeCourseRows(template),
    columns: toTimeCourseColumns(),
    rowKey: 'sampleId',
  }
}

/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
export function toTimeCourseSteps(
  template: TimeCourseTemplate | TimeCourseTemplateData
): TimeCourseStepsAdapterResult {
  const data = getTemplateData(template, 'time-course')
  validateTimeCourseData(data)
  return data.timepoints.map((timepoint, index) => ({
    id: timepoint.id,
    type: 'measurement',
    name: timepoint.label,
    description: `${data.conditions.length} condition${data.conditions.length === 1 ? '' : 's'}`,
    status: 'pending',
    order: index,
    parameters: {
      value: timepoint.value,
      unit: timepoint.unit,
    },
  }))
}