import { bioTemplatePresetControlValuesToOptions } from './builderPresetControls'
import type { BioTemplateControlValues } from './builderPresetControls'
import { createElisaAssayCollection } from './elisaAssayCollectionBuilder'
import { createFlowCytometryAssayCollection } from './flowCytometryAssayCollectionBuilder'
import { createLcmsBatchCollection } from './lcmsBatchCollectionBuilder'
import { getBioTemplatePresetInfo } from './presets'
import { createQpcrExpressionCollection } from './qpcrExpressionCollectionBuilder'
import { createTargetedMetabolomicsCollection } from './targetedMetabolomicsCollectionBuilder'
import { createWellPlateScreenCollection } from './wellPlateScreenCollectionBuilder'
import { createWesternBlotAssayCollection } from './westernBlotAssayCollectionBuilder'
import type {
  CreateElisaAssayCollectionOptions,
  CreateFlowCytometryAssayCollectionOptions,
  CreateLcmsBatchCollectionOptions,
  CreateQpcrExpressionCollectionOptions,
  CreateTargetedMetabolomicsCollectionOptions,
  CreateWellPlateScreenCollectionOptions,
  CreateWesternBlotAssayCollectionOptions,
  TemplateCollectionEnvelope,
  TemplatePresetId,
} from './types'

/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
export function createBioTemplatePresetCollection(
  name: 'wellplate-screen',
  options?: CreateWellPlateScreenCollectionOptions
): TemplateCollectionEnvelope
export function createBioTemplatePresetCollection(
  name: 'qpcr-expression',
  options?: CreateQpcrExpressionCollectionOptions
): TemplateCollectionEnvelope
export function createBioTemplatePresetCollection(
  name: 'lcms-batch',
  options?: CreateLcmsBatchCollectionOptions
): TemplateCollectionEnvelope
export function createBioTemplatePresetCollection(
  name: 'targeted-metabolomics',
  options?: CreateTargetedMetabolomicsCollectionOptions
): TemplateCollectionEnvelope
export function createBioTemplatePresetCollection(
  name: 'elisa-assay',
  options?: CreateElisaAssayCollectionOptions
): TemplateCollectionEnvelope
export function createBioTemplatePresetCollection(
  name: 'flow-cytometry-assay',
  options?: CreateFlowCytometryAssayCollectionOptions
): TemplateCollectionEnvelope
export function createBioTemplatePresetCollection(
  name: 'western-blot-assay',
  options?: CreateWesternBlotAssayCollectionOptions
): TemplateCollectionEnvelope
export function createBioTemplatePresetCollection(
  name: string,
  options?:
    | CreateWellPlateScreenCollectionOptions
    | CreateQpcrExpressionCollectionOptions
    | CreateLcmsBatchCollectionOptions
    | CreateTargetedMetabolomicsCollectionOptions
    | CreateElisaAssayCollectionOptions
    | CreateFlowCytometryAssayCollectionOptions
    | CreateWesternBlotAssayCollectionOptions
): TemplateCollectionEnvelope
export function createBioTemplatePresetCollection(
  name: TemplatePresetId | string,
  options:
    | CreateWellPlateScreenCollectionOptions
    | CreateQpcrExpressionCollectionOptions
    | CreateLcmsBatchCollectionOptions
    | CreateTargetedMetabolomicsCollectionOptions
    | CreateElisaAssayCollectionOptions
    | CreateFlowCytometryAssayCollectionOptions
    | CreateWesternBlotAssayCollectionOptions = {}
): TemplateCollectionEnvelope {
  const preset = getBioTemplatePresetInfo(name)
  if (!preset) {
    throw new Error(`Unknown template preset '${name}'.`)
  }
  if (preset.name === 'wellplate-screen') {
    return createWellPlateScreenCollection(options as CreateWellPlateScreenCollectionOptions)
  }
  if (preset.name === 'qpcr-expression') {
    return createQpcrExpressionCollection(options as CreateQpcrExpressionCollectionOptions)
  }
  if (preset.name === 'lcms-batch') {
    return createLcmsBatchCollection(options as CreateLcmsBatchCollectionOptions)
  }
  if (preset.name === 'targeted-metabolomics') {
    return createTargetedMetabolomicsCollection(options as CreateTargetedMetabolomicsCollectionOptions)
  }
  if (preset.name === 'elisa-assay') {
    return createElisaAssayCollection(options as CreateElisaAssayCollectionOptions)
  }
  if (preset.name === 'flow-cytometry-assay') {
    return createFlowCytometryAssayCollection(options as CreateFlowCytometryAssayCollectionOptions)
  }
  if (preset.name === 'western-blot-assay') {
    return createWesternBlotAssayCollection(options as CreateWesternBlotAssayCollectionOptions)
  }
  throw new Error(`Unknown template preset '${name}'.`)
}

/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
export function createBioTemplatePresetCollectionFromControls(
  name: 'wellplate-screen',
  values: BioTemplateControlValues
): TemplateCollectionEnvelope
export function createBioTemplatePresetCollectionFromControls(
  name: 'qpcr-expression',
  values: BioTemplateControlValues
): TemplateCollectionEnvelope
export function createBioTemplatePresetCollectionFromControls(
  name: 'lcms-batch',
  values: BioTemplateControlValues
): TemplateCollectionEnvelope
export function createBioTemplatePresetCollectionFromControls(
  name: 'targeted-metabolomics',
  values: BioTemplateControlValues
): TemplateCollectionEnvelope
export function createBioTemplatePresetCollectionFromControls(
  name: 'elisa-assay',
  values: BioTemplateControlValues
): TemplateCollectionEnvelope
export function createBioTemplatePresetCollectionFromControls(
  name: 'flow-cytometry-assay',
  values: BioTemplateControlValues
): TemplateCollectionEnvelope
export function createBioTemplatePresetCollectionFromControls(
  name: 'western-blot-assay',
  values: BioTemplateControlValues
): TemplateCollectionEnvelope
export function createBioTemplatePresetCollectionFromControls(
  name: TemplatePresetId | string,
  values: BioTemplateControlValues
): TemplateCollectionEnvelope
export function createBioTemplatePresetCollectionFromControls(
  name: TemplatePresetId | string,
  values: BioTemplateControlValues
): TemplateCollectionEnvelope {
  const options = bioTemplatePresetControlValuesToOptions(name, values)
  return createBioTemplatePresetCollection(name, options)
}