import {
  CONCENTRATION_UNITS,
  ICONS,
  PLATE_FORMAT_OPTIONS,
} from './controlSchemaConstants'
import type {
  BioTemplateControlSchema,
} from './controlSchemaTypes'
import type {
  TemplateId,
} from './types'

export const templateControlSchemas = {
  'plate-map': {
    plateName: {
      label: 'Plate name',
      default: 'Plate 1',
      section: 'layout',
      sectionLabel: 'Layout',
      sectionSubtitle: 'Plate geometry',
      view: 'design',
      sidebar: { icon: ICONS.plate, iconColor: '#0d9488', iconBg: '#ccfbf1' },
    },
    plateFormat: {
      label: 'Format',
      default: 96,
      options: PLATE_FORMAT_OPTIONS,
      section: 'layout',
      view: 'design',
    },
    sampleNames: {
      type: 'tags',
      label: 'Samples',
      default: ['Control', 'Treatment'],
      section: 'samples',
      sectionLabel: 'Samples',
      sectionSubtitle: 'Groups and legend',
      view: 'design',
      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
    },
  },
  'sample-sheet': {
    sampleCount: {
      type: 'number',
      label: 'Sample count',
      default: 2,
      min: 1,
      max: 10000,
      section: 'samples',
      sectionLabel: 'Samples',
      sectionSubtitle: 'Metadata table',
      view: 'design',
      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
    },
    includeGroups: {
      label: 'Include groups',
      default: true,
      section: 'samples',
      view: 'design',
    },
    includeBatch: {
      label: 'Include batch',
      default: false,
      section: 'columns',
      sectionLabel: 'Columns',
      view: 'design',
      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
    },
  },
  'sample-prep': {
    prepType: {
      label: 'Prep type',
      default: 'extraction',
      options: ['extraction', 'dilution', 'normalization', 'transfer', 'quench', 'custom'],
      section: 'protocol',
      sectionLabel: 'Protocol',
      sectionSubtitle: 'Prep workflow',
      view: 'design',
      sidebar: { icon: ICONS.run, iconColor: '#f97316', iconBg: '#ffedd5' },
    },
    volumeUnit: {
      label: 'Volume unit',
      default: 'uL',
      options: ['uL', 'mL'],
      section: 'protocol',
      view: 'design',
    },
    outputVolume: {
      type: 'number',
      label: 'Output volume',
      default: 50,
      min: 0,
      section: 'protocol',
      view: 'design',
    },
  },
  'dose-response': {
    unit: {
      label: 'Dose unit',
      default: 'uM',
      options: CONCENTRATION_UNITS,
      section: 'dose',
      sectionLabel: 'Dose Design',
      sectionSubtitle: 'Concentration series',
      view: 'design',
      sidebar: { icon: ICONS.dose, iconColor: '#8b5cf6', iconBg: '#ede9fe' },
    },
    replicates: {
      type: 'number',
      label: 'Replicates',
      default: 3,
      min: 1,
      max: 24,
      section: 'dose',
      view: 'design',
    },
    includePlateLayout: {
      label: 'Create plate layout',
      default: true,
      section: 'layout',
      sectionLabel: 'Layout',
      sectionSubtitle: 'Well assignment',
      view: 'design',
      sidebar: { icon: ICONS.plate, iconColor: '#0d9488', iconBg: '#ccfbf1', defaultOpen: false },
    },
  },
  'calibration-curve': {
    analyte: {
      label: 'Analyte',
      default: 'Analyte',
      section: 'standards',
      sectionLabel: 'Standards',
      sectionSubtitle: 'Curve setup',
      view: 'analysis',
      sidebar: { icon: ICONS.dose, iconColor: '#8b5cf6', iconBg: '#ede9fe' },
    },
    model: {
      label: 'Model',
      default: 'linear',
      options: ['linear', 'linear-weighted-1-x', 'linear-weighted-1-x2', 'quadratic', 'four-parameter-logistic'],
      section: 'fit',
      sectionLabel: 'Fit',
      view: 'analysis',
      sidebar: { icon: ICONS.settings, iconColor: '#0d9488', iconBg: '#ccfbf1' },
    },
    minRSquared: {
      type: 'number',
      label: 'Minimum R squared',
      default: 0.99,
      min: 0,
      max: 1,
      props: { step: 0.001 },
      section: 'fit',
      view: 'analysis',
    },
  },
  'time-course': {
    timeUnit: {
      label: 'Time unit',
      default: 'hour',
      options: ['second', 'minute', 'hour', 'day', 'week'],
      section: 'schedule',
      sectionLabel: 'Schedule',
      sectionSubtitle: 'Sampling timeline',
      view: 'design',
      sidebar: { icon: ICONS.run, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
    },
    replicates: {
      type: 'number',
      label: 'Replicates',
      default: 3,
      min: 1,
      max: 24,
      section: 'samples',
      sectionLabel: 'Samples',
      view: 'design',
      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
    },
  },
  'protocol-steps': {
    defaultDuration: {
      type: 'number',
      label: 'Default duration',
      default: 30,
      min: 0,
      section: 'protocol',
      sectionLabel: 'Protocol',
      sectionSubtitle: 'Step defaults',
      view: 'design',
      sidebar: { icon: ICONS.run, iconColor: '#f97316', iconBg: '#ffedd5' },
      props: { suffix: 'min' },
    },
    editable: {
      label: 'Editable timeline',
      default: true,
      section: 'protocol',
      view: 'design',
    },
  },
  'assay-matrix': {
    featureType: {
      label: 'Feature type',
      default: 'metabolite',
      options: ['metabolite', 'protein', 'gene', 'cell', 'compound', 'readout', 'other'],
      section: 'features',
      sectionLabel: 'Features',
      sectionSubtitle: 'Measurement matrix',
      view: 'analysis',
      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
    },
    normalizeValues: {
      label: 'Normalize values',
      default: false,
      section: 'analysis',
      sectionLabel: 'Analysis',
      view: 'analysis',
      sidebar: { icon: ICONS.settings, iconColor: '#0d9488', iconBg: '#ccfbf1', defaultOpen: false },
    },
  },
  'reagent-list': {
    reagentKind: {
      label: 'Reagent kind',
      default: 'reagent',
      options: ['compound', 'antibody', 'primer', 'enzyme', 'buffer', 'media', 'kit', 'reagent', 'other'],
      section: 'inventory',
      sectionLabel: 'Inventory',
      sectionSubtitle: 'Reagent metadata',
      view: 'design',
      sidebar: { icon: ICONS.table, iconColor: '#10b981', iconBg: '#d1fae5' },
    },
    trackStock: {
      label: 'Track stock level',
      default: true,
      section: 'inventory',
      view: 'design',
    },
  },
  'flow-cytometry-panel': {
    markers: {
      type: 'tags',
      label: 'Markers',
      default: ['CD3', 'CD4', 'CD8'],
      section: 'panel',
      sectionLabel: 'Panel',
      sectionSubtitle: 'Markers and controls',
      view: 'design',
      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
    },
    instrument: {
      label: 'Instrument',
      default: 'Flow cytometer',
      section: 'panel',
      sectionLabel: 'Panel',
      sectionSubtitle: 'Markers and controls',
      view: 'design',
      sidebar: { icon: ICONS.settings, iconColor: '#0d9488', iconBg: '#ccfbf1' },
    },
    includeDefaultControls: {
      label: 'Default controls',
      default: true,
      section: 'panel',
      view: 'design',
    },
  },
  'instrument-run': {
    instrument: {
      label: 'Instrument',
      default: 'LC-MS',
      options: ['LC-MS', 'GC-MS', 'Orbitrap', 'Triple quadrupole', 'Plate reader', 'Other'],
      section: 'acquisition',
      sectionLabel: 'Acquisition',
      sectionSubtitle: 'Run queue',
      view: 'run',
      sidebar: { icon: ICONS.run, iconColor: '#ef4444', iconBg: '#fee2e2' },
    },
    method: {
      label: 'Method',
      default: 'Default method',
      section: 'acquisition',
      view: 'run',
    },
    includeQc: {
      label: 'Include QC',
      default: true,
      section: 'quality',
      sectionLabel: 'Quality Control',
      view: 'run',
      sidebar: { icon: ICONS.settings, iconColor: '#0d9488', iconBg: '#ccfbf1', defaultOpen: false },
    },
  },
  'qpcr-plate': {
    chemistry: {
      label: 'Chemistry',
      default: 'sybr',
      options: ['sybr', 'taqman', 'probe', 'evagreen', 'other'],
      section: 'assay',
      sectionLabel: 'Assay',
      sectionSubtitle: 'qPCR setup',
      view: 'design',
      sidebar: { icon: ICONS.plate, iconColor: '#0d9488', iconBg: '#ccfbf1' },
    },
    replicates: {
      type: 'number',
      label: 'Replicates',
      default: 3,
      min: 1,
      max: 12,
      section: 'assay',
      view: 'design',
    },
    includeNoTemplateControls: {
      label: 'No-template controls',
      default: true,
      section: 'controls',
      sectionLabel: 'Controls',
      view: 'design',
      sidebar: { icon: ICONS.settings, iconColor: '#8b5cf6', iconBg: '#ede9fe', defaultOpen: false },
    },
  },
} satisfies Record<TemplateId, BioTemplateControlSchema>