import type {
  DataFrameColumn,
  SelectOption,
} from '../types'
import { getTemplateData } from './templateEnvelopes'
import { validateSampleSheetData } from './templateValidators'
import type {
  SampleColumnsAdapterResult,
  SampleDataFrameAdapterResult,
  SampleOptionsAdapterResult,
  SampleRowsAdapterResult,
  SampleSheetTemplate,
  SampleSheetTemplateData,
} from './types'

/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
export function toSampleRows(
  template: SampleSheetTemplate | SampleSheetTemplateData
): SampleRowsAdapterResult {
  const data = getTemplateData(template, 'sample-sheet')
  validateSampleSheetData(data)
  return data.samples.map(sample => ({
    sampleId: sample.sampleId,
    name: sample.name,
    group: sample.group,
    batch: sample.batch,
    replicate: sample.replicate,
    plateId: sample.plateId,
    wellId: sample.wellId,
    ...(sample.metadata ?? {}),
  }))
}

/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
export function toSampleColumns(
  template: SampleSheetTemplate | SampleSheetTemplateData
): SampleColumnsAdapterResult {
  const data = getTemplateData(template, 'sample-sheet')
  validateSampleSheetData(data)
  return data.columns.map((column): DataFrameColumn<Record<string, unknown>> => ({
    key: sampleColumnKey(column.id),
    label: column.label,
    sortable: true,
    align: column.type === 'number' || column.type === 'integer' ? 'right' : 'left',
  }))
}

/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
export function toSampleDataFrame(
  template: SampleSheetTemplate | SampleSheetTemplateData
): SampleDataFrameAdapterResult {
  return {
    data: toSampleRows(template),
    columns: toSampleColumns(template),
    rowKey: 'sampleId',
  }
}

/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
export function toSampleOptions(
  template: SampleSheetTemplate | SampleSheetTemplateData
): SampleOptionsAdapterResult {
  const data = getTemplateData(template, 'sample-sheet')
  validateSampleSheetData(data)
  return data.samples.map((sample): SelectOption<string> => ({
    value: sample.sampleId,
    label: sample.name ?? sample.sampleId,
    description: [sample.group, sample.batch].filter(Boolean).join(' / ') || undefined,
  }))
}

function sampleColumnKey(columnId: string): string {
  const aliases: Record<string, string> = {
    sample_id: 'sampleId',
    plate_id: 'plateId',
    well_id: 'wellId',
  }
  return aliases[columnId] ?? columnId
}