import {
  CONCENTRATION_UNITS,
  ICONS,
  PLATE_FORMAT_OPTIONS,
} from './controlSchemaConstants'
import type {
  BioTemplateControlSchema,
} from './controlSchemaTypes'
import {
  templateControlSchemas,
} from './templateControlSchemas'
import type {
  TemplatePresetId,
} from './types'

export const presetControlSchemas = {
  'wellplate-screen': {
    ...templateControlSchemas['plate-map'],
    ...templateControlSchemas['dose-response'],
    sampleNames: {
      ...templateControlSchemas['plate-map'].sampleNames,
      default: ['Control', 'Treatment'],
    },
  },
  'qpcr-expression': {
    sampleNames: {
      type: 'tags',
      label: 'Samples',
      default: ['Control', 'Treatment'],
      section: 'samples',
      sectionLabel: 'Samples',
      sectionSubtitle: 'Expression groups',
      view: 'design',
      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
    },
    targets: {
      type: 'tags',
      label: 'Targets',
      default: ['ACTB', 'GAPDH'],
      section: 'assay',
      sectionLabel: 'Assay',
      view: 'design',
      sidebar: { icon: ICONS.plate, iconColor: '#0d9488', iconBg: '#ccfbf1' },
    },
    ...templateControlSchemas['qpcr-plate'],
  },
  'lcms-batch': {
    sampleNames: {
      type: 'tags',
      label: 'Samples',
      default: ['S001', 'S002'],
      section: 'samples',
      sectionLabel: 'Samples',
      sectionSubtitle: 'Batch samples',
      view: 'run',
      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
    },
    featureNames: {
      type: 'tags',
      label: 'Features',
      default: ['Glucose', 'Lactate'],
      section: 'features',
      sectionLabel: 'Features',
      view: 'analysis',
      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
    },
    ...templateControlSchemas['instrument-run'],
    ...templateControlSchemas['assay-matrix'],
  },
  'targeted-metabolomics': {
    sampleNames: {
      type: 'tags',
      label: 'Samples',
      default: ['S001', 'S002'],
      section: 'samples',
      sectionLabel: 'Samples',
      sectionSubtitle: 'Unknowns and QC pool',
      view: 'run',
      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
    },
    metaboliteNames: {
      type: 'tags',
      label: 'Metabolites',
      default: ['Glucose', 'Lactate', 'Pyruvate'],
      section: 'features',
      sectionLabel: 'Metabolites',
      sectionSubtitle: 'Quantitation panel',
      view: 'analysis',
      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
    },
    internalStandards: {
      type: 'tags',
      label: 'Internal standards',
      default: ['Stable isotope internal standard mix'],
      section: 'standards',
      sectionLabel: 'Standards',
      sectionSubtitle: 'Calibration and internal standards',
      view: 'analysis',
      sidebar: { icon: ICONS.dose, iconColor: '#8b5cf6', iconBg: '#ede9fe' },
    },
    standardConcentrations: {
      type: 'tags',
      label: 'Calibration levels',
      default: ['0.1', '1', '10', '100'],
      section: 'standards',
      view: 'analysis',
    },
    concentrationUnit: {
      label: 'Concentration unit',
      default: 'uM',
      options: CONCENTRATION_UNITS,
      section: 'standards',
      view: 'analysis',
    },
    responseUnit: {
      label: 'Response unit',
      default: 'peak area ratio',
      section: 'readout',
      sectionLabel: 'Readout',
      view: 'analysis',
      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
    },
    instrument: {
      ...templateControlSchemas['instrument-run'].instrument,
      default: 'LC-MS',
    },
    method: {
      ...templateControlSchemas['instrument-run'].method,
      default: 'Targeted metabolomics',
    },
    prepType: {
      ...templateControlSchemas['sample-prep'].prepType,
      default: 'extraction',
    },
    outputVolume: templateControlSchemas['sample-prep'].outputVolume,
    includeQc: templateControlSchemas['instrument-run'].includeQc,
  },
  'elisa-assay': {
    sampleNames: {
      type: 'tags',
      label: 'Samples',
      default: ['Control', 'Treatment'],
      section: 'samples',
      sectionLabel: 'Samples',
      sectionSubtitle: 'Unknowns and controls',
      view: 'design',
      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
    },
    analyte: {
      label: 'Analyte',
      default: 'Analyte',
      section: 'standards',
      sectionLabel: 'Standards',
      sectionSubtitle: 'Calibration setup',
      view: 'analysis',
      sidebar: { icon: ICONS.dose, iconColor: '#8b5cf6', iconBg: '#ede9fe' },
    },
    standardConcentrations: {
      type: 'tags',
      label: 'Standards',
      default: ['1000', '100', '10', '1'],
      section: 'standards',
      view: 'analysis',
    },
    unit: {
      label: 'Concentration unit',
      default: 'pg/mL',
      options: ['pg/mL', 'ng/mL', 'ug/mL', 'nM', 'uM'],
      section: 'standards',
      view: 'analysis',
    },
    responseUnit: {
      label: 'Response unit',
      default: 'OD450',
      section: 'readout',
      sectionLabel: 'Readout',
      view: 'analysis',
      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
    },
    plateName: {
      label: 'Plate name',
      default: 'ELISA plate',
      section: 'layout',
      sectionLabel: 'Layout',
      sectionSubtitle: 'Plate geometry',
      view: 'design',
      sidebar: { icon: ICONS.plate, iconColor: '#0d9488', iconBg: '#ccfbf1' },
    },
    plateFormat: {
      label: 'Format',
      default: 96,
      options: PLATE_FORMAT_OPTIONS,
      section: 'layout',
      view: 'design',
    },
  },
  'flow-cytometry-assay': {
    sampleNames: {
      type: 'tags',
      label: 'Samples',
      default: ['Control', 'Treatment'],
      section: 'samples',
      sectionLabel: 'Samples',
      sectionSubtitle: 'Assay groups',
      view: 'design',
      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
    },
    markers: {
      ...templateControlSchemas['flow-cytometry-panel'].markers,
      default: ['CD3', 'CD4', 'CD8'],
    },
    featureNames: {
      type: 'tags',
      label: 'Readouts',
      default: ['CD3+ cells', 'CD4+ cells', 'CD8+ cells'],
      section: 'features',
      sectionLabel: 'Readouts',
      sectionSubtitle: 'Assay matrix columns',
      view: 'analysis',
      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
    },
    instrument: {
      ...templateControlSchemas['flow-cytometry-panel'].instrument,
      default: 'Flow cytometer',
    },
    includeDefaultControls: templateControlSchemas['flow-cytometry-panel'].includeDefaultControls,
  },
  'western-blot-assay': {
    sampleNames: {
      type: 'tags',
      label: 'Samples',
      default: ['Control', 'Treatment'],
      section: 'samples',
      sectionLabel: 'Samples',
      sectionSubtitle: 'Blot lanes and groups',
      view: 'design',
      sidebar: { icon: ICONS.samples, iconColor: '#10b981', iconBg: '#d1fae5' },
    },
    targets: {
      type: 'tags',
      label: 'Targets',
      default: ['Target protein'],
      section: 'assay',
      sectionLabel: 'Assay',
      sectionSubtitle: 'Protein targets',
      view: 'design',
      sidebar: { icon: ICONS.table, iconColor: '#0ea5e9', iconBg: '#e0f2fe' },
    },
    loadingControl: {
      label: 'Loading control',
      default: 'ACTB',
      section: 'normalization',
      sectionLabel: 'Normalization',
      view: 'analysis',
      sidebar: { icon: ICONS.settings, iconColor: '#0d9488', iconBg: '#ccfbf1' },
    },
  },
} satisfies Record<TemplatePresetId, BioTemplateControlSchema>