import { getTemplateData } from './templateEnvelopes'
import { validateFlowCytometryPanelData } from './templateValidators'
import type {
  FlowCytometryPanelTemplate,
  FlowCytometryPanelTemplateData,
  FlowPanelColumnsAdapterResult,
  FlowPanelDataFrameAdapterResult,
  FlowPanelRowsAdapterResult,
} from './types'

/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
export function toFlowPanelRows(
  template: FlowCytometryPanelTemplate | FlowCytometryPanelTemplateData
): FlowPanelRowsAdapterResult {
  const data = getTemplateData(template, 'flow-cytometry-panel')
  validateFlowCytometryPanelData(data)
  return data.markers.map(marker => {
    const markerControls = data.controls
      .filter(control => control.markerId === marker.id)
      .map(control => control.name)
      .join(', ')
    return {
      id: marker.id,
      marker: marker.marker,
      fluorophore: marker.fluorophore,
      detector: marker.detector,
      clone: marker.clone,
      reagentId: marker.reagentId,
      purpose: marker.purpose,
      compensationRequired: marker.compensationRequired,
      controls: markerControls,
      instrument: data.instrument,
      ...(marker.metadata ?? {}),
    }
  })
}

/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
export function toFlowPanelColumns(): FlowPanelColumnsAdapterResult {
  return [
    { key: 'marker', label: 'Marker', sortable: true },
    { key: 'fluorophore', label: 'Fluorophore', sortable: true },
    { key: 'detector', label: 'Detector', sortable: true },
    { key: 'clone', label: 'Clone', sortable: true },
    { key: 'purpose', label: 'Purpose', sortable: true },
    { key: 'compensationRequired', label: 'Compensation', sortable: true },
    { key: 'controls', label: 'Controls' },
    { key: 'instrument', label: 'Instrument', sortable: true },
  ]
}

/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
export function toFlowPanelDataFrame(
  template: FlowCytometryPanelTemplate | FlowCytometryPanelTemplateData
): FlowPanelDataFrameAdapterResult {
  return {
    data: toFlowPanelRows(template),
    columns: toFlowPanelColumns(),
    rowKey: 'id',
  }
}