import { compoundIdFromName } from './builderIdUtils'
import {
  normalizeCompound,
  normalizeControl,
} from './calibrationNormalizers'
import {
  createTemplateEnvelope,
  getTemplateData,
} from './templateEnvelopes'
import { validateDoseResponseData } from './templateValidators'
import type {
  CreateDoseResponseTemplateOptions,
  DoseResponseTemplate,
  DoseResponseTemplateData,
  PlateMapTemplateData,
} from './types'

/** @deprecated Scheduled for removal from the core SDK in MINT 1.4; the biology templates move to a dedicated package or the owning plugins. */
export function createDoseResponseTemplate(
  options: CreateDoseResponseTemplateOptions
): DoseResponseTemplate {
  const compounds = Array.isArray(options.compounds)
    ? options.compounds.map(normalizeCompound)
    : Object.entries(options.compounds).map(([name, concentrations], index) => normalizeCompound({
      id: compoundIdFromName(name, index),
      name,
      concentrations,
      metadata: {},
    }))

  const layout = options.layout
    ? getTemplateData<PlateMapTemplateData>(options.layout)
    : undefined

  const data: DoseResponseTemplateData = {
    compounds,
    unit: options.unit,
    replicates: options.replicates ?? 1,
    controls: (options.controls ?? []).map(normalizeControl),
    layout,
    metadata: options.metadata ?? {},
  }
  validateDoseResponseData(data)
  return createTemplateEnvelope('dose-response', data, options.metadata ?? {})
}