import { PColumnPredicate, PFrameHandle, PlMultiSequenceAlignmentColorSchemeOption, PlMultiSequenceAlignmentSettings, PlSelectionModel, PObjectId, PTableColumnId } from '@platforma-sdk/model';
import { ListOptionNormalized } from '@platforma-sdk/ui-vue';
import { HighlightLegend, ResidueCounts } from './types';
import type * as PhylogeneticTreeWorker from './phylogenetic-tree.worker';
export declare const SEQUENCE_LIMIT = 1000;
export declare const useSequenceColumnsOptions: (paramsGetter: () => {
    pFrame: PFrameHandle | undefined;
    sequenceColumnPredicate: PColumnPredicate;
}) => {
    data: import('vue').Ref<OptionsWithDefaults<PObjectId> | undefined, OptionsWithDefaults<PObjectId> | undefined>;
    isLoading: import('vue').Ref<boolean, boolean>;
    error: import('vue').Ref<Error | undefined, Error | undefined>;
};
export declare const useLabelColumnsOptions: (paramsGetter: () => {
    pFrame: PFrameHandle | undefined;
    sequenceColumnIds: PObjectId[] | undefined;
}) => {
    data: import('vue').Ref<OptionsWithDefaults<PTableColumnId> | undefined, OptionsWithDefaults<PTableColumnId> | undefined>;
    isLoading: import('vue').Ref<boolean, boolean>;
    error: import('vue').Ref<Error | undefined, Error | undefined>;
};
export declare const useMarkupColumnsOptions: (paramsGetter: () => {
    pFrame: PFrameHandle | undefined;
    sequenceColumnIds: PObjectId[] | undefined;
}) => {
    data: import('vue').Ref<ListOptionNormalized<PObjectId[]>[] | undefined, ListOptionNormalized<PObjectId[]>[] | undefined>;
    isLoading: import('vue').Ref<boolean, boolean>;
    error: import('vue').Ref<Error | undefined, Error | undefined>;
};
export declare const useMultipleAlignmentData: (paramsGetter: () => {
    pFrame: PFrameHandle | undefined;
    sequenceColumnIds: PObjectId[] | undefined;
    labelColumnIds: PTableColumnId[] | undefined;
    selection: PlSelectionModel | undefined;
    colorScheme: PlMultiSequenceAlignmentColorSchemeOption;
    alignmentParams: PlMultiSequenceAlignmentSettings["alignmentParams"];
    shouldBuildPhylogeneticTree: boolean;
}) => {
    data: import('vue').Ref<MultipleAlignmentData | undefined, MultipleAlignmentData | undefined>;
    isLoading: import('vue').Ref<boolean, boolean>;
    error: import('vue').Ref<Error | undefined, Error | undefined>;
};
type MultipleAlignmentData = {
    sequences: {
        name: string;
        rows: string[];
        residueCounts: ResidueCounts;
        highlightImageUrl?: string;
    }[];
    labels: {
        rows: string[];
    }[];
    highlightLegend?: HighlightLegend;
    phylogeneticTree?: PhylogeneticTreeWorker.TreeNodeData[];
    exceedsLimit: boolean;
};
type OptionsWithDefaults<T> = {
    options: ListOptionNormalized<T>[];
    defaults: T[];
};
export {};
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