import type { SampleInfo, Source } from '../shared/types.ts';
import type PluginManager from '@jbrowse/core/PluginManager';
import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
import type { LastStopTokenCheck, Region } from '@jbrowse/core/util';
export declare function getPhasedGenotypeMatrix({ pluginManager, args, }: {
    pluginManager: PluginManager;
    args: {
        adapterConfig: AnyConfigurationModel;
        stopTokenCheck?: LastStopTokenCheck;
        sessionId: string;
        headers?: Record<string, string>;
        regions: Region[];
        sources: Source[];
        bpPerPx: number;
        minorAlleleFrequencyFilter: number;
        lengthCutoffFilter: number;
        sampleInfo: Record<string, SampleInfo>;
    };
}): Promise<Record<string, number[]>>;