import type { SampleInfo, Source } from '../shared/types.ts';
import type PluginManager from '@jbrowse/core/PluginManager';
import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
import type { Region, StopToken } from '@jbrowse/core/util';
export declare function executeClusterGenotypeMatrix({ pluginManager, args, }: {
    pluginManager: PluginManager;
    args: {
        adapterConfig: AnyConfigurationModel;
        stopToken?: StopToken;
        sessionId: string;
        headers?: Record<string, string>;
        regions: Region[];
        bpPerPx: number;
        minorAlleleFrequencyFilter: number;
        lengthCutoffFilter: number;
        statusCallback: (arg: string) => void;
        sources: Source[];
        renderingMode?: string;
        sampleInfo?: Record<string, SampleInfo>;
    };
}): Promise<{
    order: number[];
    tree: string;
}>;