import { Cursors, DataTypeMapping } from '../codecs/_base.ts';
import { DataSeriesEncodingKey } from '../codecs/dataSeriesTypes.ts';
import CramContainerCompressionScheme, { DataSeriesTypes } from '../container/compressionScheme.ts';
import { DecodeOptions, ReadFeature } from '../record.ts';
import CramSlice, { SliceHeader } from './index.ts';
import { CramFileBlock } from '../file.ts';
export type DataSeriesDecoder = <T extends DataSeriesEncodingKey>(dataSeriesName: T) => DataTypeMapping[DataSeriesTypes[T]] | undefined;
export type BulkByteRawDecoder = (dataSeriesName: 'QS' | 'BA', length: number) => Uint8Array | undefined;
export default function decodeRecord(slice: CramSlice, decodeDataSeries: DataSeriesDecoder, compressionScheme: CramContainerCompressionScheme, sliceHeader: SliceHeader, coreDataBlock: CramFileBlock, blocksByContentId: Record<number, CramFileBlock>, cursors: Cursors, majorVersion: number, recordNumber: number, uniqueId: number, decodeOptions?: Required<DecodeOptions>, decodeBulkBytesRaw?: BulkByteRawDecoder): {
    readLength: number;
    sequenceId: number | undefined;
    cramFlags: number;
    flags: number;
    alignmentStart: number;
    readGroupId: number;
    readNameRaw: Uint8Array<ArrayBufferLike> | undefined;
    mateToUse: {
        mateFlags: number;
        mateSequenceId: number;
        mateAlignmentStart: number;
        mateReadName: string | undefined;
    } | undefined;
    templateSize: number | undefined;
    mateRecordNumber: number | undefined;
    readFeatures: ReadFeature[] | undefined;
    lengthOnRef: number | undefined;
    mappingQuality: number | undefined;
    qualityScores: Uint8Array<ArrayBufferLike> | null | undefined;
    readBases: string | null | undefined;
    tags: Record<string, string | number | number[] | undefined>;
    uniqueId: number;
};