{
  "$schema": "http://json-schema.org/draft-07/schema#",
  "$id": "bundle://schemas/coupling_profile.json",
  "title": "coupling_profile@1 (the only authorized cross-layer entry)",
  "type": "object",
  "additionalProperties": false,
  "required": [
    "artifact_type",
    "mode",
    "rules"
  ],
  "properties": {
    "artifact_type": {
      "const": "coupling_profile@1"
    },
    "mode": {
      "enum": [
        "qualitative_direction",
        "user_calibrated_bound",
        "evidence_calibrated_bound"
      ]
    },
    "rules": {
      "type": "array",
      "x-canonical": "set",
      "items": {
        "type": "object",
        "additionalProperties": false,
        "required": [
          "rule_id",
          "model_ref",
          "host_profile",
          "host_model_binding_ref",
          "gpr_proof_ref",
          "condition_card_ref",
          "source_gene",
          "reaction_id",
          "reaction_direction",
          "operation",
          "baseline_bound",
          "derived_bound",
          "unit",
          "mapping_function",
          "condition_hash",
          "input_kind",
          "evidence_refs",
          "assumption_refs",
          "confidence"
        ],
        "properties": {
          "rule_id": {
            "type": "string",
            "minLength": 1,
            "maxLength": 128
          },
          "model_ref": {
            "$ref": "bundle://meta/common.defs.json#/definitions/artifactRef"
          },
          "host_profile": {
            "$ref": "bundle://meta/common.defs.json#/definitions/artifactRef"
          },
          "host_model_binding_ref": {
            "$ref": "bundle://meta/common.defs.json#/definitions/artifactRef"
          },
          "gpr_proof_ref": {
            "$ref": "bundle://meta/common.defs.json#/definitions/artifactRef"
          },
          "condition_card_ref": {
            "$ref": "bundle://meta/common.defs.json#/definitions/artifactRef"
          },
          "source_gene": {
            "type": "object",
            "additionalProperties": false,
            "properties": {
              "namespace": {
                "type": "string",
                "minLength": 1,
                "maxLength": 128
              },
              "id": {
                "type": "string",
                "minLength": 1,
                "maxLength": 256
              }
            },
            "required": [
              "namespace",
              "id"
            ]
          },
          "reaction_id": {
            "type": "string",
            "minLength": 1,
            "maxLength": 256
          },
          "reaction_direction": {
            "enum": [
              "forward",
              "reverse",
              "both"
            ]
          },
          "operation": {
            "enum": [
              "set_upper_bound",
              "set_lower_bound",
              "scale_bound"
            ]
          },
          "baseline_bound": {
            "type": "string",
            "x-decimal-string": true,
            "pattern": "^(0|-?(0\\.[0-9]*[1-9]|[1-9][0-9]*(\\.[0-9]*[1-9])?))$",
            "maxLength": 320
          },
          "derived_bound": {
            "type": "string",
            "x-decimal-string": true,
            "pattern": "^(0|-?(0\\.[0-9]*[1-9]|[1-9][0-9]*(\\.[0-9]*[1-9])?))$",
            "maxLength": 320
          },
          "unit": {
            "type": "string",
            "minLength": 1,
            "maxLength": 64
          },
          "mapping_function": {
            "type": "object",
            "additionalProperties": false,
            "properties": {
              "id": {
                "type": "string",
                "minLength": 1,
                "maxLength": 128
              },
              "version": {
                "type": "string",
                "minLength": 1,
                "maxLength": 64
              },
              "parameters": {
                "type": "object",
                "additionalProperties": true
              }
            },
            "required": [
              "id",
              "version",
              "parameters"
            ]
          },
          "condition_hash": {
            "$ref": "bundle://meta/common.defs.json#/definitions/sha256Hex"
          },
          "input_kind": {
            "enum": [
              "user_explicit_assumption",
              "measured_expression",
              "literature_calibration",
              "sequence_proxy",
              "manual_override"
            ]
          },
          "evidence_refs": {
            "type": "array",
            "x-canonical": "set",
            "items": {
              "$ref": "bundle://meta/common.defs.json#/definitions/sha256Hex"
            }
          },
          "assumption_refs": {
            "type": "array",
            "x-canonical": "set",
            "items": {
              "$ref": "bundle://meta/common.defs.json#/definitions/sha256Hex"
            }
          },
          "confidence": {
            "enum": [
              "high",
              "medium",
              "low"
            ]
          }
        },
        "allOf": [
          {
            "if": {
              "type": "object",
              "properties": {
                "input_kind": {
                  "const": "manual_override"
                }
              }
            },
            "then": {
              "type": "object",
              "required": [
                "assumption_refs"
              ],
              "properties": {
                "assumption_refs": {
                  "type": "array",
                  "minItems": 1
                }
              }
            }
          }
        ]
      }
    },
    "scope_check": {
      "type": "object",
      "additionalProperties": false,
      "properties": {
        "authorized": {
          "type": "boolean"
        },
        "detail": {
          "type": "string",
          "maxLength": 2048
        }
      },
      "required": [
        "authorized"
      ]
    },
    "blocked_reasons": {
      "type": "array",
      "x-canonical": "set",
      "items": {
        "type": "string",
        "minLength": 1,
        "maxLength": 1024
      }
    }
  },
  "allOf": [
    {
      "if": {
        "type": "object",
        "properties": {
          "mode": {
            "const": "evidence_calibrated_bound"
          }
        }
      },
      "then": {
        "type": "object",
        "properties": {
          "rules": {
            "type": "array",
            "items": {
              "type": "object",
              "properties": {
                "input_kind": {
                  "not": {
                    "const": "manual_override"
                  }
                }
              }
            }
          }
        }
      }
    },
    {
      "if": {
        "type": "object",
        "properties": {
          "mode": {
            "not": {
              "const": "qualitative_direction"
            }
          }
        }
      },
      "then": {
        "type": "object",
        "properties": {
          "rules": {
            "type": "array",
            "items": {
              "type": "object",
              "properties": {
                "input_kind": {
                  "not": {
                    "const": "sequence_proxy"
                  }
                }
              }
            }
          }
        }
      }
    },
    {
      "if": {
        "type": "object",
        "properties": {
          "mode": {
            "not": {
              "const": "user_calibrated_bound"
            }
          }
        }
      },
      "then": {
        "type": "object",
        "properties": {
          "rules": {
            "type": "array",
            "items": {
              "type": "object",
              "properties": {
                "input_kind": {
                  "not": {
                    "const": "manual_override"
                  }
                }
              }
            }
          }
        }
      }
    }
  ]
}