/**
 * @fileoverview Fetch the 3D conformer (atomic coordinates + bonds) for a PubChem compound.
 * @module mcp-server/tools/definitions/get-compound-3d-structure
 */
import { z } from '@cyanheads/mcp-ts-core';
import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
export declare const getCompound3dStructure: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
    cid: z.ZodNumber;
    format: z.ZodDefault<z.ZodEnum<{
        json: "json";
        sdf: "sdf";
    }>>;
    includeAlternateConformerIds: z.ZodDefault<z.ZodBoolean>;
    maxAtoms: z.ZodOptional<z.ZodNumber>;
    maxBonds: z.ZodOptional<z.ZodNumber>;
    includeRawSdf: z.ZodDefault<z.ZodBoolean>;
}, z.core.$strip>, z.ZodObject<{
    cid: z.ZodNumber;
    conformerId: z.ZodOptional<z.ZodString>;
    atomCount: z.ZodNumber;
    bondCount: z.ZodNumber;
    atoms: z.ZodOptional<z.ZodArray<z.ZodObject<{
        element: z.ZodString;
        x: z.ZodNumber;
        y: z.ZodNumber;
        z: z.ZodNumber;
    }, z.core.$strip>>>;
    bonds: z.ZodOptional<z.ZodArray<z.ZodObject<{
        a1: z.ZodNumber;
        a2: z.ZodNumber;
        order: z.ZodNumber;
    }, z.core.$strip>>>;
    sdf: z.ZodOptional<z.ZodString>;
    alternateConformerIds: z.ZodOptional<z.ZodArray<z.ZodString>>;
}, z.core.$strip>, readonly [{
    readonly reason: "no_3d_structure";
    readonly code: JsonRpcErrorCode.NotFound;
    readonly thrownBy: "service";
    readonly when: "PubChem has no computed 3D conformer for the requested CID";
    readonly recovery: "Use pubchem_get_compound_image for the 2D structure, or verify the CID with pubchem_search_compounds.";
}], {
    readonly truncated: z.ZodOptional<z.ZodBoolean>;
    readonly shownAtoms: z.ZodOptional<z.ZodNumber>;
    readonly shownBonds: z.ZodOptional<z.ZodNumber>;
    readonly atomCap: z.ZodOptional<z.ZodNumber>;
    readonly bondCap: z.ZodOptional<z.ZodNumber>;
    readonly shownSdfLines: z.ZodOptional<z.ZodNumber>;
    readonly notice: z.ZodOptional<z.ZodString>;
}>;
//# sourceMappingURL=get-compound-3d-structure.tool.d.ts.map