/** * @file Structure View * @author Alexander Rose * @private */ import Structure from './structure'; import Selection from '../selection/selection'; import BitArray from '../utils/bitarray'; import BondProxy from '../proxy/bond-proxy'; import AtomProxy from '../proxy/atom-proxy'; import ResidueProxy from '../proxy/residue-proxy'; import ChainProxy from '../proxy/chain-proxy'; import ModelProxy from '../proxy/model-proxy'; import SpatialHash from '../geometry/spatial-hash'; import BondHash from '../store/bond-hash'; import ResidueMap from '../store/residue-map'; import AtomMap from '../store/atom-map'; import ModelStore from '../store/model-store'; import ChainStore from '../store/chain-store'; import ResidueStore from '../store/residue-store'; import AtomStore from '../store/atom-store'; import BondStore from '../store/bond-store'; import Validation from './validation'; import Unitcell from '../symmetry/unitcell'; import Entity from './entity'; import Assembly from '../symmetry/assembly'; import { Data } from './data'; /** * View on the structure, restricted to the selection */ declare class StructureView extends Structure { structure: Structure; selection: Selection; /** * @param {Structure} structure - the structure * @param {Selection} selection - the selection */ constructor(structure: Structure, selection: Selection); init(): void; get type(): string; get name(): string; get path(): string; get title(): string; get id(): string; get data(): Data; get atomSetDict(): { [k: string]: BitArray; }; get biomolDict(): { [k: string]: Assembly; }; get entityList(): Entity[]; get unitcell(): Unitcell | undefined; get frames(): Float32Array[]; get boxes(): Float32Array[]; get validation(): Validation | undefined; get bondStore(): BondStore; get backboneBondStore(): BondStore; get rungBondStore(): BondStore; get atomStore(): AtomStore; get residueStore(): ResidueStore; get chainStore(): ChainStore; get modelStore(): ModelStore; get atomMap(): AtomMap; get residueMap(): ResidueMap; get bondHash(): BondHash | undefined; get spatialHash(): SpatialHash | undefined; get _hasCoords(): boolean | undefined; set _hasCoords(value: boolean | undefined); /** * Updates atomSet, bondSet, atomSetCache, atomCount, bondCount, boundingBox, center. * @emits {Structure.signals.refreshed} when refreshed * @return {undefined} */ refresh(): void; setSelection(selection: Selection): void; getSelection(selection?: Selection): Selection; getStructure(): Structure | StructureView; eachBond(callback: (entity: BondProxy) => any, selection?: Selection): void; eachAtom(callback: (entity: AtomProxy) => any, selection?: Selection): void; eachResidue(callback: (entity: ResidueProxy) => any, selection?: Selection): void; /** * Not implemented * @alias StructureView#eachResidueN * @return {undefined} */ eachResidueN(n: number, callback: (entity: ResidueProxy) => any): void; eachChain(callback: (entity: ChainProxy) => any, selection?: Selection): void; eachModel(callback: (entity: ModelProxy) => any, selection?: Selection): void; getAtomSet(selection?: boolean | Selection | BitArray, ignoreView?: boolean): BitArray; getAtomIndices(selection?: Selection): Uint32Array | undefined; refreshPosition(): void; dispose(): void; } export default StructureView;