/** * @file Contact Representation * @author Alexander Rose * @private */ import StructureRepresentation, { StructureRepresentationParameters } from './structure-representation'; import TextBuffer from '../buffer/text-buffer'; import Viewer from '../viewer/viewer'; import { Structure } from '../ngl'; import StructureView from '../structure/structure-view'; import CylinderGeometryBuffer from '../buffer/cylindergeometry-buffer'; import CylinderImpostorBuffer from '../buffer/cylinderimpostor-buffer'; export interface ContactRepresentationParameters extends StructureRepresentationParameters { hydrogenBond: boolean; weakHydrogenBond: boolean; waterHydrogenBond: boolean; backboneHydrogenBond: boolean; hydrophobic: boolean; halogenBond: boolean; ionicInteraction: boolean; metalCoordination: boolean; cationPi: boolean; piStacking: boolean; filterSele: string | [string, string]; maxHydrophobicDist: number; maxHbondDist: number; maxHbondSulfurDist: number; maxHbondAccAngle: number; maxHbondDonAngle: number; maxHbondAccPlaneAngle: number; maxHbondDonPlaneAngle: number; maxPiStackingDist: number; maxPiStackingOffset: number; maxPiStackingAngle: number; maxCationPiDist: number; maxCationPiOffset: number; maxIonicDist: number; maxHalogenBondDist: number; maxHalogenBondAngle: number; maxMetalDist: number; refineSaltBridges: boolean; masterModelIndex: number; lineOfSightDistFactor: number; } /** * Contact representation. */ declare class ContactRepresentation extends StructureRepresentation { protected hydrogenBond: boolean; protected weakHydrogenBond: boolean; protected waterHydrogenBond: boolean; protected backboneHydrogenBond: boolean; protected hydrophobic: boolean; protected halogenBond: boolean; protected ionicInteraction: boolean; protected metalCoordination: boolean; protected cationPi: boolean; protected piStacking: boolean; protected filterSele: string | [string, string]; protected maxHydrophobicDist: number; protected maxHbondDist: number; protected maxHbondSulfurDist: number; protected maxHbondAccAngle: number; protected maxHbondDonAngle: number; protected maxHbondAccPlaneAngle: number; protected maxHbondDonPlaneAngle: number; protected maxPiStackingDist: number; protected maxPiStackingOffset: number; protected maxPiStackingAngle: number; protected maxCationPiDist: number; protected maxCationPiOffset: number; protected maxIonicDist: number; protected maxHalogenBondDist: number; protected maxHalogenBondAngle: number; protected maxMetalDist: number; protected refineSaltBridges: boolean; protected masterModelIndex: number; protected lineOfSightDistFactor: number; constructor(structure: Structure, viewer: Viewer, params: Partial); init(params: Partial): void; getAtomRadius(): number; getContactData(sview: StructureView): import("../chemistry/interactions/contact").ContactData; createData(sview: StructureView): { bufferList: (TextBuffer | CylinderGeometryBuffer | CylinderImpostorBuffer)[]; }; } export default ContactRepresentation;