import { AutomaticJsonStringConversion as __AutomaticJsonStringConversion } from "@smithy/core/serde";
import { DocumentType as __DocumentType, StreamingBlobTypes } from "@smithy/types";
import {
  Accelerators,
  AnnotationType,
  BatchStatus,
  CacheBehavior,
  ConfigurationStatus,
  CreationType,
  EncryptionType,
  ETagAlgorithm,
  ETagAlgorithmFamily,
  FileType,
  FormatToHeaderKey,
  JobStatus,
  NetworkingMode,
  ReadSetActivationJobItemStatus,
  ReadSetActivationJobStatus,
  ReadSetExportJobItemStatus,
  ReadSetExportJobStatus,
  ReadSetFile,
  ReadSetImportJobItemStatus,
  ReadSetImportJobStatus,
  ReadSetPartSource,
  ReadSetStatus,
  ReferenceCreationType,
  ReferenceFile,
  ReferenceImportJobItemStatus,
  ReferenceImportJobStatus,
  ReferenceStatus,
  ResourceOwner,
  RunCacheStatus,
  RunExport,
  RunLogLevel,
  RunRetentionMode,
  RunStatus,
  SchemaValueType,
  ScratchStorageMode,
  SequenceStoreStatus,
  ShareResourceType,
  ShareStatus,
  SourceReferenceType,
  StorageType,
  StoreFormat,
  StoreStatus,
  StoreType,
  SubmissionStatus,
  TaskStatus,
  VersionStatus,
  WorkflowEngine,
  WorkflowExport,
  WorkflowStatus,
  WorkflowType,
} from "./enums";
export interface AbortMultipartReadSetUploadRequest {
  sequenceStoreId: string | undefined;
  uploadId: string | undefined;
}
export interface AbortMultipartReadSetUploadResponse {}
export interface AcceptShareRequest {
  shareId: string | undefined;
}
export interface AcceptShareResponse {
  status?: ShareStatus | undefined;
}
export interface ActivateReadSetFilter {
  status?: ReadSetActivationJobStatus | undefined;
  createdAfter?: Date | undefined;
  createdBefore?: Date | undefined;
}
export interface ActivateReadSetJobItem {
  id: string | undefined;
  sequenceStoreId: string | undefined;
  status: ReadSetActivationJobStatus | undefined;
  creationTime: Date | undefined;
  completionTime?: Date | undefined;
}
export interface ActivateReadSetSourceItem {
  readSetId: string | undefined;
  status: ReadSetActivationJobItemStatus | undefined;
  statusMessage?: string | undefined;
}
export interface AnnotationImportItemDetail {
  source: string | undefined;
  jobStatus: JobStatus | undefined;
}
export interface AnnotationImportItemSource {
  source: string | undefined;
}
export interface CancelAnnotationImportRequest {
  jobId: string | undefined;
}
export interface CancelAnnotationImportResponse {}
export interface GetAnnotationImportRequest {
  jobId: string | undefined;
}
export interface ReadOptions {
  sep?: string | undefined;
  encoding?: string | undefined;
  quote?: string | undefined;
  quoteAll?: boolean | undefined;
  escape?: string | undefined;
  escapeQuotes?: boolean | undefined;
  comment?: string | undefined;
  header?: boolean | undefined;
  lineSep?: string | undefined;
}
export interface TsvOptions {
  readOptions?: ReadOptions | undefined;
}
export interface VcfOptions {
  ignoreQualField?: boolean | undefined;
  ignoreFilterField?: boolean | undefined;
}
export type FormatOptions =
  | FormatOptions.TsvOptionsMember
  | FormatOptions.VcfOptionsMember
  | FormatOptions.$UnknownMember;
export declare namespace FormatOptions {
  interface TsvOptionsMember {
    tsvOptions: TsvOptions;
    vcfOptions?: never;
    $unknown?: never;
  }
  interface VcfOptionsMember {
    tsvOptions?: never;
    vcfOptions: VcfOptions;
    $unknown?: never;
  }
  interface $UnknownMember {
    tsvOptions?: never;
    vcfOptions?: never;
    $unknown: [string, any];
  }
  interface Visitor<T> {
    tsvOptions: (value: TsvOptions) => T;
    vcfOptions: (value: VcfOptions) => T;
    _: (name: string, value: any) => T;
  }
}
export interface GetAnnotationImportResponse {
  id: string | undefined;
  destinationName: string | undefined;
  versionName: string | undefined;
  roleArn: string | undefined;
  status: JobStatus | undefined;
  statusMessage: string | undefined;
  creationTime: Date | undefined;
  updateTime: Date | undefined;
  completionTime: Date | undefined;
  items: AnnotationImportItemDetail[] | undefined;
  runLeftNormalization: boolean | undefined;
  formatOptions: FormatOptions | undefined;
  annotationFields?: Record<string, string> | undefined;
}
export interface ListAnnotationImportJobsFilter {
  status?: JobStatus | undefined;
  storeName?: string | undefined;
}
export interface ListAnnotationImportJobsRequest {
  maxResults?: number | undefined;
  ids?: string[] | undefined;
  nextToken?: string | undefined;
  filter?: ListAnnotationImportJobsFilter | undefined;
}
export interface AnnotationImportJobItem {
  id: string | undefined;
  destinationName: string | undefined;
  versionName: string | undefined;
  roleArn: string | undefined;
  status: JobStatus | undefined;
  creationTime: Date | undefined;
  updateTime: Date | undefined;
  completionTime?: Date | undefined;
  runLeftNormalization?: boolean | undefined;
  annotationFields?: Record<string, string> | undefined;
}
export interface ListAnnotationImportJobsResponse {
  annotationImportJobs?: AnnotationImportJobItem[] | undefined;
  nextToken?: string | undefined;
}
export interface StartAnnotationImportRequest {
  destinationName: string | undefined;
  roleArn: string | undefined;
  items: AnnotationImportItemSource[] | undefined;
  versionName?: string | undefined;
  formatOptions?: FormatOptions | undefined;
  runLeftNormalization?: boolean | undefined;
  annotationFields?: Record<string, string> | undefined;
}
export interface StartAnnotationImportResponse {
  jobId: string | undefined;
}
export type ReferenceItem = ReferenceItem.ReferenceArnMember | ReferenceItem.$UnknownMember;
export declare namespace ReferenceItem {
  interface ReferenceArnMember {
    referenceArn: string;
    $unknown?: never;
  }
  interface $UnknownMember {
    referenceArn?: never;
    $unknown: [string, any];
  }
  interface Visitor<T> {
    referenceArn: (value: string) => T;
    _: (name: string, value: any) => T;
  }
}
export interface SseConfig {
  type: EncryptionType | undefined;
  keyArn?: string | undefined;
}
export interface TsvStoreOptions {
  annotationType?: AnnotationType | undefined;
  formatToHeader?: Partial<Record<FormatToHeaderKey, string>> | undefined;
  schema?: Record<string, SchemaValueType>[] | undefined;
}
export type StoreOptions = StoreOptions.TsvStoreOptionsMember | StoreOptions.$UnknownMember;
export declare namespace StoreOptions {
  interface TsvStoreOptionsMember {
    tsvStoreOptions: TsvStoreOptions;
    $unknown?: never;
  }
  interface $UnknownMember {
    tsvStoreOptions?: never;
    $unknown: [string, any];
  }
  interface Visitor<T> {
    tsvStoreOptions: (value: TsvStoreOptions) => T;
    _: (name: string, value: any) => T;
  }
}
export interface CreateAnnotationStoreRequest {
  reference?: ReferenceItem | undefined;
  name?: string | undefined;
  description?: string | undefined;
  tags?: Record<string, string> | undefined;
  versionName?: string | undefined;
  sseConfig?: SseConfig | undefined;
  storeFormat: StoreFormat | undefined;
  storeOptions?: StoreOptions | undefined;
}
export interface CreateAnnotationStoreResponse {
  id: string | undefined;
  reference?: ReferenceItem | undefined;
  storeFormat?: StoreFormat | undefined;
  storeOptions?: StoreOptions | undefined;
  status: StoreStatus | undefined;
  name: string | undefined;
  versionName: string | undefined;
  creationTime: Date | undefined;
}
export interface DeleteAnnotationStoreRequest {
  name: string | undefined;
  force?: boolean | undefined;
}
export interface DeleteAnnotationStoreResponse {
  status: StoreStatus | undefined;
}
export interface GetAnnotationStoreRequest {
  name: string | undefined;
}
export interface GetAnnotationStoreResponse {
  id: string | undefined;
  reference: ReferenceItem | undefined;
  status: StoreStatus | undefined;
  storeArn: string | undefined;
  name: string | undefined;
  description: string | undefined;
  sseConfig: SseConfig | undefined;
  creationTime: Date | undefined;
  updateTime: Date | undefined;
  tags: Record<string, string> | undefined;
  storeOptions?: StoreOptions | undefined;
  storeFormat?: StoreFormat | undefined;
  statusMessage: string | undefined;
  storeSizeBytes: number | undefined;
  numVersions: number | undefined;
}
export interface ListAnnotationStoresFilter {
  status?: StoreStatus | undefined;
}
export interface ListAnnotationStoresRequest {
  ids?: string[] | undefined;
  maxResults?: number | undefined;
  nextToken?: string | undefined;
  filter?: ListAnnotationStoresFilter | undefined;
}
export interface AnnotationStoreItem {
  id: string | undefined;
  reference: ReferenceItem | undefined;
  status: StoreStatus | undefined;
  storeArn: string | undefined;
  name: string | undefined;
  storeFormat: StoreFormat | undefined;
  description: string | undefined;
  sseConfig: SseConfig | undefined;
  creationTime: Date | undefined;
  updateTime: Date | undefined;
  statusMessage: string | undefined;
  storeSizeBytes: number | undefined;
}
export interface ListAnnotationStoresResponse {
  annotationStores?: AnnotationStoreItem[] | undefined;
  nextToken?: string | undefined;
}
export interface UpdateAnnotationStoreRequest {
  name: string | undefined;
  description?: string | undefined;
}
export interface UpdateAnnotationStoreResponse {
  id: string | undefined;
  reference: ReferenceItem | undefined;
  status: StoreStatus | undefined;
  name: string | undefined;
  description: string | undefined;
  creationTime: Date | undefined;
  updateTime: Date | undefined;
  storeOptions?: StoreOptions | undefined;
  storeFormat?: StoreFormat | undefined;
}
export interface TsvVersionOptions {
  annotationType?: AnnotationType | undefined;
  formatToHeader?: Partial<Record<FormatToHeaderKey, string>> | undefined;
  schema?: Record<string, SchemaValueType>[] | undefined;
}
export type VersionOptions = VersionOptions.TsvVersionOptionsMember | VersionOptions.$UnknownMember;
export declare namespace VersionOptions {
  interface TsvVersionOptionsMember {
    tsvVersionOptions: TsvVersionOptions;
    $unknown?: never;
  }
  interface $UnknownMember {
    tsvVersionOptions?: never;
    $unknown: [string, any];
  }
  interface Visitor<T> {
    tsvVersionOptions: (value: TsvVersionOptions) => T;
    _: (name: string, value: any) => T;
  }
}
export interface CreateAnnotationStoreVersionRequest {
  name: string | undefined;
  versionName: string | undefined;
  description?: string | undefined;
  versionOptions?: VersionOptions | undefined;
  tags?: Record<string, string> | undefined;
}
export interface CreateAnnotationStoreVersionResponse {
  id: string | undefined;
  versionName: string | undefined;
  storeId: string | undefined;
  versionOptions?: VersionOptions | undefined;
  name: string | undefined;
  status: VersionStatus | undefined;
  creationTime: Date | undefined;
}
export interface DeleteAnnotationStoreVersionsRequest {
  name: string | undefined;
  versions: string[] | undefined;
  force?: boolean | undefined;
}
export interface VersionDeleteError {
  versionName: string | undefined;
  message: string | undefined;
}
export interface DeleteAnnotationStoreVersionsResponse {
  errors?: VersionDeleteError[] | undefined;
}
export interface GetAnnotationStoreVersionRequest {
  name: string | undefined;
  versionName: string | undefined;
}
export interface GetAnnotationStoreVersionResponse {
  storeId: string | undefined;
  id: string | undefined;
  status: VersionStatus | undefined;
  versionArn: string | undefined;
  name: string | undefined;
  versionName: string | undefined;
  description: string | undefined;
  creationTime: Date | undefined;
  updateTime: Date | undefined;
  tags: Record<string, string> | undefined;
  versionOptions?: VersionOptions | undefined;
  statusMessage: string | undefined;
  versionSizeBytes: number | undefined;
}
export interface ListAnnotationStoreVersionsFilter {
  status?: VersionStatus | undefined;
}
export interface ListAnnotationStoreVersionsRequest {
  name: string | undefined;
  maxResults?: number | undefined;
  nextToken?: string | undefined;
  filter?: ListAnnotationStoreVersionsFilter | undefined;
}
export interface AnnotationStoreVersionItem {
  storeId: string | undefined;
  id: string | undefined;
  status: VersionStatus | undefined;
  versionArn: string | undefined;
  name: string | undefined;
  versionName: string | undefined;
  description: string | undefined;
  creationTime: Date | undefined;
  updateTime: Date | undefined;
  statusMessage: string | undefined;
  versionSizeBytes: number | undefined;
}
export interface ListAnnotationStoreVersionsResponse {
  annotationStoreVersions?: AnnotationStoreVersionItem[] | undefined;
  nextToken?: string | undefined;
}
export interface UpdateAnnotationStoreVersionRequest {
  name: string | undefined;
  versionName: string | undefined;
  description?: string | undefined;
}
export interface UpdateAnnotationStoreVersionResponse {
  storeId: string | undefined;
  id: string | undefined;
  status: VersionStatus | undefined;
  name: string | undefined;
  versionName: string | undefined;
  description: string | undefined;
  creationTime: Date | undefined;
  updateTime: Date | undefined;
}
export interface BatchDeleteReadSetRequest {
  ids: string[] | undefined;
  sequenceStoreId: string | undefined;
}
export interface ReadSetBatchError {
  id: string | undefined;
  code: string | undefined;
  message: string | undefined;
}
export interface BatchDeleteReadSetResponse {
  errors?: ReadSetBatchError[] | undefined;
}
export interface BatchListItem {
  id?: string | undefined;
  name?: string | undefined;
  status?: BatchStatus | undefined;
  createdAt?: Date | undefined;
  totalRuns?: number | undefined;
  workflowId?: string | undefined;
}
export interface InlineSetting {
  runSettingId: string | undefined;
  name?: string | undefined;
  outputUri?: string | undefined;
  priority?: number | undefined;
  parameters?: __DocumentType | undefined;
  outputBucketOwnerId?: string | undefined;
  runTags?: Record<string, string> | undefined;
  engineSettings?: __DocumentType | undefined;
}
export type BatchRunSettings =
  | BatchRunSettings.InlineSettingsMember
  | BatchRunSettings.S3UriSettingsMember
  | BatchRunSettings.$UnknownMember;
export declare namespace BatchRunSettings {
  interface InlineSettingsMember {
    inlineSettings: InlineSetting[];
    s3UriSettings?: never;
    $unknown?: never;
  }
  interface S3UriSettingsMember {
    inlineSettings?: never;
    s3UriSettings: string;
    $unknown?: never;
  }
  interface $UnknownMember {
    inlineSettings?: never;
    s3UriSettings?: never;
    $unknown: [string, any];
  }
  interface Visitor<T> {
    inlineSettings: (value: InlineSetting[]) => T;
    s3UriSettings: (value: string) => T;
    _: (name: string, value: any) => T;
  }
}
export interface CancelRunRequest {
  id: string | undefined;
}
export interface CancelRunBatchRequest {
  batchId: string | undefined;
}
export interface CancelRunBatchResponse {}
export interface CancelVariantImportRequest {
  jobId: string | undefined;
}
export interface CancelVariantImportResponse {}
export interface CompleteReadSetUploadPartListItem {
  partNumber: number | undefined;
  partSource: ReadSetPartSource | undefined;
  checksum: string | undefined;
}
export interface CompleteMultipartReadSetUploadRequest {
  sequenceStoreId: string | undefined;
  uploadId: string | undefined;
  parts: CompleteReadSetUploadPartListItem[] | undefined;
}
export interface CompleteMultipartReadSetUploadResponse {
  readSetId: string | undefined;
}
export interface ConfigurationDetails {
  name?: string | undefined;
  arn?: string | undefined;
  uuid?: string | undefined;
}
export interface ConfigurationListItem {
  arn?: string | undefined;
  name?: string | undefined;
  description?: string | undefined;
  status?: ConfigurationStatus | undefined;
  creationTime?: Date | undefined;
}
export interface VpcConfig {
  securityGroupIds?: string[] | undefined;
  subnetIds?: string[] | undefined;
}
export interface RunConfigurations {
  vpcConfig?: VpcConfig | undefined;
}
export interface CreateConfigurationRequest {
  name: string | undefined;
  description?: string | undefined;
  runConfigurations: RunConfigurations | undefined;
  tags?: Record<string, string> | undefined;
  requestId?: string | undefined;
}
export interface VpcConfigResponse {
  securityGroupIds?: string[] | undefined;
  subnetIds?: string[] | undefined;
  vpcId?: string | undefined;
}
export interface RunConfigurationsResponse {
  vpcConfig?: VpcConfigResponse | undefined;
}
export interface CreateConfigurationResponse {
  arn?: string | undefined;
  uuid?: string | undefined;
  name?: string | undefined;
  description?: string | undefined;
  runConfigurations?: RunConfigurationsResponse | undefined;
  status?: ConfigurationStatus | undefined;
  creationTime?: Date | undefined;
  tags?: Record<string, string> | undefined;
}
export interface DeleteConfigurationRequest {
  name: string | undefined;
}
export interface GetConfigurationRequest {
  name: string | undefined;
}
export interface GetConfigurationResponse {
  arn?: string | undefined;
  uuid?: string | undefined;
  name?: string | undefined;
  description?: string | undefined;
  runConfigurations?: RunConfigurationsResponse | undefined;
  status?: ConfigurationStatus | undefined;
  creationTime?: Date | undefined;
  tags?: Record<string, string> | undefined;
}
export interface ListConfigurationsRequest {
  maxResults?: number | undefined;
  startingToken?: string | undefined;
}
export interface ListConfigurationsResponse {
  items?: ConfigurationListItem[] | undefined;
  nextToken?: string | undefined;
}
export interface ImageMapping {
  sourceImage?: string | undefined;
  destinationImage?: string | undefined;
}
export interface RegistryMapping {
  upstreamRegistryUrl?: string | undefined;
  ecrRepositoryPrefix?: string | undefined;
  upstreamRepositoryPrefix?: string | undefined;
  ecrAccountId?: string | undefined;
}
export interface ContainerRegistryMap {
  registryMappings?: RegistryMapping[] | undefined;
  imageMappings?: ImageMapping[] | undefined;
}
export interface CreateMultipartReadSetUploadRequest {
  sequenceStoreId: string | undefined;
  clientToken?: string | undefined;
  sourceFileType: FileType | undefined;
  subjectId: string | undefined;
  sampleId: string | undefined;
  generatedFrom?: string | undefined;
  referenceArn?: string | undefined;
  name: string | undefined;
  description?: string | undefined;
  tags?: Record<string, string> | undefined;
}
export interface CreateMultipartReadSetUploadResponse {
  sequenceStoreId: string | undefined;
  uploadId: string | undefined;
  sourceFileType: FileType | undefined;
  subjectId: string | undefined;
  sampleId: string | undefined;
  generatedFrom?: string | undefined;
  referenceArn: string | undefined;
  name?: string | undefined;
  description?: string | undefined;
  tags?: Record<string, string> | undefined;
  creationTime: Date | undefined;
}
export interface CreateReferenceStoreRequest {
  name: string | undefined;
  description?: string | undefined;
  sseConfig?: SseConfig | undefined;
  tags?: Record<string, string> | undefined;
  clientToken?: string | undefined;
}
export interface CreateReferenceStoreResponse {
  id: string | undefined;
  arn: string | undefined;
  name?: string | undefined;
  description?: string | undefined;
  sseConfig?: SseConfig | undefined;
  creationTime: Date | undefined;
}
export interface CreateRunCacheRequest {
  cacheBehavior?: CacheBehavior | undefined;
  cacheS3Location: string | undefined;
  description?: string | undefined;
  name?: string | undefined;
  requestId?: string | undefined;
  tags?: Record<string, string> | undefined;
  cacheBucketOwnerId?: string | undefined;
}
export interface CreateRunCacheResponse {
  arn?: string | undefined;
  id?: string | undefined;
  status?: RunCacheStatus | undefined;
  tags?: Record<string, string> | undefined;
}
export interface CreateRunGroupRequest {
  name?: string | undefined;
  maxCpus?: number | undefined;
  maxRuns?: number | undefined;
  maxDuration?: number | undefined;
  tags?: Record<string, string> | undefined;
  requestId?: string | undefined;
  maxGpus?: number | undefined;
}
export interface CreateRunGroupResponse {
  arn?: string | undefined;
  id?: string | undefined;
  tags?: Record<string, string> | undefined;
}
export interface S3AccessConfig {
  accessLogLocation?: string | undefined;
}
export interface CreateSequenceStoreRequest {
  name: string | undefined;
  description?: string | undefined;
  sseConfig?: SseConfig | undefined;
  tags?: Record<string, string> | undefined;
  clientToken?: string | undefined;
  fallbackLocation?: string | undefined;
  eTagAlgorithmFamily?: ETagAlgorithmFamily | undefined;
  propagatedSetLevelTags?: string[] | undefined;
  s3AccessConfig?: S3AccessConfig | undefined;
}
export interface SequenceStoreS3Access {
  s3Uri?: string | undefined;
  s3AccessPointArn?: string | undefined;
  accessLogLocation?: string | undefined;
}
export interface CreateSequenceStoreResponse {
  id: string | undefined;
  arn: string | undefined;
  name?: string | undefined;
  description?: string | undefined;
  sseConfig?: SseConfig | undefined;
  creationTime: Date | undefined;
  fallbackLocation?: string | undefined;
  eTagAlgorithmFamily?: ETagAlgorithmFamily | undefined;
  status?: SequenceStoreStatus | undefined;
  statusMessage?: string | undefined;
  propagatedSetLevelTags?: string[] | undefined;
  s3Access?: SequenceStoreS3Access | undefined;
}
export interface CreateShareRequest {
  resourceArn: string | undefined;
  principalSubscriber: string | undefined;
  shareName?: string | undefined;
}
export interface CreateShareResponse {
  shareId?: string | undefined;
  status?: ShareStatus | undefined;
  shareName?: string | undefined;
}
export interface CreateVariantStoreRequest {
  reference: ReferenceItem | undefined;
  name?: string | undefined;
  description?: string | undefined;
  tags?: Record<string, string> | undefined;
  sseConfig?: SseConfig | undefined;
}
export interface CreateVariantStoreResponse {
  id: string | undefined;
  reference?: ReferenceItem | undefined;
  status: StoreStatus | undefined;
  name: string | undefined;
  creationTime: Date | undefined;
}
export interface SourceReference {
  type: SourceReferenceType | undefined;
  value: string | undefined;
}
export interface DefinitionRepository {
  connectionArn: string | undefined;
  fullRepositoryId: string | undefined;
  sourceReference?: SourceReference | undefined;
  excludeFilePatterns?: string[] | undefined;
}
export interface WorkflowParameter {
  description?: string | undefined;
  optional?: boolean | undefined;
}
export interface CreateWorkflowRequest {
  name?: string | undefined;
  description?: string | undefined;
  engine?: WorkflowEngine | undefined;
  definitionZip?: Uint8Array | undefined;
  definitionUri?: string | undefined;
  main?: string | undefined;
  parameterTemplate?: Record<string, WorkflowParameter> | undefined;
  storageCapacity?: number | undefined;
  tags?: Record<string, string> | undefined;
  requestId?: string | undefined;
  accelerators?: Accelerators | undefined;
  storageType?: StorageType | undefined;
  containerRegistryMap?: ContainerRegistryMap | undefined;
  containerRegistryMapUri?: string | undefined;
  readmeMarkdown?: string | undefined;
  parameterTemplatePath?: string | undefined;
  readmePath?: string | undefined;
  definitionRepository?: DefinitionRepository | undefined;
  workflowBucketOwnerId?: string | undefined;
  readmeUri?: string | undefined;
}
export interface CreateWorkflowResponse {
  arn?: string | undefined;
  id?: string | undefined;
  status?: WorkflowStatus | undefined;
  tags?: Record<string, string> | undefined;
  uuid?: string | undefined;
}
export interface CreateWorkflowVersionRequest {
  workflowId: string | undefined;
  versionName: string | undefined;
  definitionZip?: Uint8Array | undefined;
  definitionUri?: string | undefined;
  accelerators?: Accelerators | undefined;
  description?: string | undefined;
  engine?: WorkflowEngine | undefined;
  main?: string | undefined;
  parameterTemplate?: Record<string, WorkflowParameter> | undefined;
  requestId?: string | undefined;
  storageType?: StorageType | undefined;
  storageCapacity?: number | undefined;
  tags?: Record<string, string> | undefined;
  workflowBucketOwnerId?: string | undefined;
  containerRegistryMap?: ContainerRegistryMap | undefined;
  containerRegistryMapUri?: string | undefined;
  readmeMarkdown?: string | undefined;
  parameterTemplatePath?: string | undefined;
  readmePath?: string | undefined;
  definitionRepository?: DefinitionRepository | undefined;
  readmeUri?: string | undefined;
}
export interface CreateWorkflowVersionResponse {
  arn?: string | undefined;
  workflowId?: string | undefined;
  versionName?: string | undefined;
  status?: WorkflowStatus | undefined;
  tags?: Record<string, string> | undefined;
  uuid?: string | undefined;
}
export interface DefaultRunSetting {
  workflowId: string | undefined;
  workflowType?: WorkflowType | undefined;
  roleArn: string | undefined;
  name?: string | undefined;
  cacheId?: string | undefined;
  cacheBehavior?: CacheBehavior | undefined;
  runGroupId?: string | undefined;
  priority?: number | undefined;
  parameters?: __DocumentType | undefined;
  storageCapacity?: number | undefined;
  outputUri?: string | undefined;
  logLevel?: RunLogLevel | undefined;
  runTags?: Record<string, string> | undefined;
  retentionMode?: RunRetentionMode | undefined;
  storageType?: StorageType | undefined;
  workflowOwnerId?: string | undefined;
  outputBucketOwnerId?: string | undefined;
  workflowVersionName?: string | undefined;
  networkingMode?: NetworkingMode | undefined;
  configurationName?: string | undefined;
  engineSettings?: __DocumentType | undefined;
  scratchStorageMode?: ScratchStorageMode | undefined;
}
export interface DefinitionRepositoryDetails {
  connectionArn?: string | undefined;
  fullRepositoryId?: string | undefined;
  sourceReference?: SourceReference | undefined;
  providerType?: string | undefined;
  providerEndpoint?: string | undefined;
}
export interface DeleteBatchRequest {
  batchId: string | undefined;
}
export interface DeleteReferenceRequest {
  id: string | undefined;
  referenceStoreId: string | undefined;
}
export interface DeleteReferenceResponse {}
export interface DeleteReferenceStoreRequest {
  id: string | undefined;
}
export interface DeleteReferenceStoreResponse {}
export interface DeleteRunRequest {
  id: string | undefined;
}
export interface DeleteRunBatchRequest {
  batchId: string | undefined;
}
export interface DeleteRunBatchResponse {}
export interface DeleteRunCacheRequest {
  id: string | undefined;
}
export interface DeleteRunGroupRequest {
  id: string | undefined;
}
export interface DeleteS3AccessPolicyRequest {
  s3AccessPointArn: string | undefined;
}
export interface DeleteS3AccessPolicyResponse {}
export interface DeleteSequenceStoreRequest {
  id: string | undefined;
}
export interface DeleteSequenceStoreResponse {}
export interface DeleteShareRequest {
  shareId: string | undefined;
}
export interface DeleteShareResponse {
  status?: ShareStatus | undefined;
}
export interface DeleteVariantStoreRequest {
  name: string | undefined;
  force?: boolean | undefined;
}
export interface DeleteVariantStoreResponse {
  status: StoreStatus | undefined;
}
export interface DeleteWorkflowRequest {
  id: string | undefined;
}
export interface DeleteWorkflowVersionRequest {
  workflowId: string | undefined;
  versionName: string | undefined;
}
export interface ETag {
  algorithm?: ETagAlgorithm | undefined;
  source1?: string | undefined;
  source2?: string | undefined;
}
export interface ExportReadSet {
  readSetId: string | undefined;
}
export interface ExportReadSetDetail {
  id: string | undefined;
  status: ReadSetExportJobItemStatus | undefined;
  statusMessage?: string | undefined;
}
export interface ExportReadSetFilter {
  status?: ReadSetExportJobStatus | undefined;
  createdAfter?: Date | undefined;
  createdBefore?: Date | undefined;
}
export interface ExportReadSetJobDetail {
  id: string | undefined;
  sequenceStoreId: string | undefined;
  destination: string | undefined;
  status: ReadSetExportJobStatus | undefined;
  creationTime: Date | undefined;
  completionTime?: Date | undefined;
}
export interface ReadSetS3Access {
  s3Uri?: string | undefined;
}
export interface FileInformation {
  totalParts?: number | undefined;
  partSize?: number | undefined;
  contentLength?: number | undefined;
  s3Access?: ReadSetS3Access | undefined;
}
export interface Filter {
  resourceArns?: string[] | undefined;
  status?: ShareStatus[] | undefined;
  type?: ShareResourceType[] | undefined;
}
export interface GetBatchRequest {
  batchId: string | undefined;
}
export interface RunSummary {
  pendingRunCount?: number | undefined;
  startingRunCount?: number | undefined;
  runningRunCount?: number | undefined;
  stoppingRunCount?: number | undefined;
  completedRunCount?: number | undefined;
  deletedRunCount?: number | undefined;
  failedRunCount?: number | undefined;
  cancelledRunCount?: number | undefined;
}
export interface SubmissionSummary {
  successfulStartSubmissionCount?: number | undefined;
  failedStartSubmissionCount?: number | undefined;
  pendingStartSubmissionCount?: number | undefined;
  successfulCancelSubmissionCount?: number | undefined;
  failedCancelSubmissionCount?: number | undefined;
  successfulDeleteSubmissionCount?: number | undefined;
  failedDeleteSubmissionCount?: number | undefined;
}
export interface GetBatchResponse {
  id?: string | undefined;
  arn?: string | undefined;
  uuid?: string | undefined;
  name?: string | undefined;
  status?: BatchStatus | undefined;
  tags?: Record<string, string> | undefined;
  totalRuns?: number | undefined;
  defaultRunSetting?: DefaultRunSetting | undefined;
  submissionSummary?: SubmissionSummary | undefined;
  runSummary?: RunSummary | undefined;
  creationTime?: Date | undefined;
  submittedTime?: Date | undefined;
  processedTime?: Date | undefined;
  failedTime?: Date | undefined;
  failureReason?: string | undefined;
}
export interface GetReadSetRequest {
  id: string | undefined;
  sequenceStoreId: string | undefined;
  file?: ReadSetFile | undefined;
  partNumber: number | undefined;
}
export interface GetReadSetResponse {
  payload?: StreamingBlobTypes | undefined;
}
export interface GetReadSetActivationJobRequest {
  id: string | undefined;
  sequenceStoreId: string | undefined;
}
export interface GetReadSetActivationJobResponse {
  id: string | undefined;
  sequenceStoreId: string | undefined;
  status: ReadSetActivationJobStatus | undefined;
  statusMessage?: string | undefined;
  creationTime: Date | undefined;
  completionTime?: Date | undefined;
  sources?: ActivateReadSetSourceItem[] | undefined;
}
export interface GetReadSetExportJobRequest {
  sequenceStoreId: string | undefined;
  id: string | undefined;
}
export interface GetReadSetExportJobResponse {
  id: string | undefined;
  sequenceStoreId: string | undefined;
  destination: string | undefined;
  status: ReadSetExportJobStatus | undefined;
  statusMessage?: string | undefined;
  creationTime: Date | undefined;
  completionTime?: Date | undefined;
  readSets?: ExportReadSetDetail[] | undefined;
}
export interface GetReadSetImportJobRequest {
  id: string | undefined;
  sequenceStoreId: string | undefined;
}
export interface SourceFiles {
  source1: string | undefined;
  source2?: string | undefined;
}
export interface ImportReadSetSourceItem {
  sourceFiles: SourceFiles | undefined;
  sourceFileType: FileType | undefined;
  status: ReadSetImportJobItemStatus | undefined;
  statusMessage?: string | undefined;
  subjectId: string | undefined;
  sampleId: string | undefined;
  generatedFrom?: string | undefined;
  referenceArn?: string | undefined;
  name?: string | undefined;
  description?: string | undefined;
  tags?: Record<string, string> | undefined;
  readSetId?: string | undefined;
}
export interface GetReadSetImportJobResponse {
  id: string | undefined;
  sequenceStoreId: string | undefined;
  roleArn: string | undefined;
  status: ReadSetImportJobStatus | undefined;
  statusMessage?: string | undefined;
  creationTime: Date | undefined;
  completionTime?: Date | undefined;
  sources: ImportReadSetSourceItem[] | undefined;
}
export interface GetReadSetMetadataRequest {
  id: string | undefined;
  sequenceStoreId: string | undefined;
}
export interface ReadSetFiles {
  source1?: FileInformation | undefined;
  source2?: FileInformation | undefined;
  index?: FileInformation | undefined;
}
export interface SequenceInformation {
  totalReadCount?: number | undefined;
  totalBaseCount?: number | undefined;
  generatedFrom?: string | undefined;
  alignment?: string | undefined;
}
export interface GetReadSetMetadataResponse {
  id: string | undefined;
  arn: string | undefined;
  sequenceStoreId: string | undefined;
  subjectId?: string | undefined;
  sampleId?: string | undefined;
  status: ReadSetStatus | undefined;
  name?: string | undefined;
  description?: string | undefined;
  fileType: FileType | undefined;
  creationTime: Date | undefined;
  sequenceInformation?: SequenceInformation | undefined;
  referenceArn?: string | undefined;
  files?: ReadSetFiles | undefined;
  statusMessage?: string | undefined;
  creationType?: CreationType | undefined;
  etag?: ETag | undefined;
  creationJobId?: string | undefined;
}
export interface GetReferenceRequest {
  id: string | undefined;
  referenceStoreId: string | undefined;
  range?: string | undefined;
  partNumber: number | undefined;
  file?: ReferenceFile | undefined;
}
export interface GetReferenceResponse {
  payload?: StreamingBlobTypes | undefined;
}
export interface GetReferenceImportJobRequest {
  id: string | undefined;
  referenceStoreId: string | undefined;
}
export interface ImportReferenceSourceItem {
  sourceFile?: string | undefined;
  status: ReferenceImportJobItemStatus | undefined;
  statusMessage?: string | undefined;
  name?: string | undefined;
  description?: string | undefined;
  tags?: Record<string, string> | undefined;
  referenceId?: string | undefined;
}
export interface GetReferenceImportJobResponse {
  id: string | undefined;
  referenceStoreId: string | undefined;
  roleArn: string | undefined;
  status: ReferenceImportJobStatus | undefined;
  statusMessage?: string | undefined;
  creationTime: Date | undefined;
  completionTime?: Date | undefined;
  sources: ImportReferenceSourceItem[] | undefined;
}
export interface GetReferenceMetadataRequest {
  id: string | undefined;
  referenceStoreId: string | undefined;
}
export interface ReferenceFiles {
  source?: FileInformation | undefined;
  index?: FileInformation | undefined;
}
export interface GetReferenceMetadataResponse {
  id: string | undefined;
  arn: string | undefined;
  referenceStoreId: string | undefined;
  md5: string | undefined;
  status?: ReferenceStatus | undefined;
  name?: string | undefined;
  description?: string | undefined;
  creationTime: Date | undefined;
  updateTime: Date | undefined;
  files?: ReferenceFiles | undefined;
  creationType?: ReferenceCreationType | undefined;
  creationJobId?: string | undefined;
}
export interface GetReferenceStoreRequest {
  id: string | undefined;
}
export interface GetReferenceStoreResponse {
  id: string | undefined;
  arn: string | undefined;
  name?: string | undefined;
  description?: string | undefined;
  sseConfig?: SseConfig | undefined;
  creationTime: Date | undefined;
}
export interface GetRunRequest {
  id: string | undefined;
  export?: RunExport[] | undefined;
}
export interface RunLogLocation {
  engineLogStream?: string | undefined;
  runLogStream?: string | undefined;
}
export interface GetRunResponse {
  arn?: string | undefined;
  id?: string | undefined;
  cacheId?: string | undefined;
  cacheBehavior?: CacheBehavior | undefined;
  engineVersion?: string | undefined;
  status?: RunStatus | undefined;
  workflowId?: string | undefined;
  workflowType?: WorkflowType | undefined;
  runId?: string | undefined;
  roleArn?: string | undefined;
  name?: string | undefined;
  runGroupId?: string | undefined;
  batchId?: string | undefined;
  priority?: number | undefined;
  definition?: string | undefined;
  digest?: string | undefined;
  parameters?: __DocumentType | undefined;
  storageCapacity?: number | undefined;
  outputUri?: string | undefined;
  logLevel?: RunLogLevel | undefined;
  resourceDigests?: Record<string, string> | undefined;
  startedBy?: string | undefined;
  creationTime?: Date | undefined;
  startTime?: Date | undefined;
  stopTime?: Date | undefined;
  statusMessage?: string | undefined;
  tags?: Record<string, string> | undefined;
  accelerators?: Accelerators | undefined;
  retentionMode?: RunRetentionMode | undefined;
  failureReason?: string | undefined;
  logLocation?: RunLogLocation | undefined;
  uuid?: string | undefined;
  runOutputUri?: string | undefined;
  storageType?: StorageType | undefined;
  workflowOwnerId?: string | undefined;
  workflowVersionName?: string | undefined;
  workflowUuid?: string | undefined;
  networkingMode?: NetworkingMode | undefined;
  scratchStorageMode?: ScratchStorageMode | undefined;
  configuration?: ConfigurationDetails | undefined;
  vpcConfig?: VpcConfigResponse | undefined;
  engineSettings?: __DocumentType | undefined;
}
export interface GetRunCacheRequest {
  id: string | undefined;
}
export interface GetRunCacheResponse {
  arn?: string | undefined;
  cacheBehavior?: CacheBehavior | undefined;
  cacheBucketOwnerId?: string | undefined;
  cacheS3Uri?: string | undefined;
  creationTime?: Date | undefined;
  description?: string | undefined;
  id?: string | undefined;
  name?: string | undefined;
  status?: RunCacheStatus | undefined;
  tags?: Record<string, string> | undefined;
}
export interface GetRunGroupRequest {
  id: string | undefined;
}
export interface GetRunGroupResponse {
  arn?: string | undefined;
  id?: string | undefined;
  name?: string | undefined;
  maxCpus?: number | undefined;
  maxRuns?: number | undefined;
  maxDuration?: number | undefined;
  creationTime?: Date | undefined;
  tags?: Record<string, string> | undefined;
  maxGpus?: number | undefined;
}
export interface GetRunTaskRequest {
  id: string | undefined;
  taskId: string | undefined;
}
export interface ImageDetails {
  image?: string | undefined;
  imageDigest?: string | undefined;
  sourceImage?: string | undefined;
}
export interface GetRunTaskResponse {
  taskId?: string | undefined;
  status?: TaskStatus | undefined;
  name?: string | undefined;
  cpus?: number | undefined;
  cacheHit?: boolean | undefined;
  cacheS3Uri?: string | undefined;
  memory?: number | undefined;
  creationTime?: Date | undefined;
  startTime?: Date | undefined;
  stopTime?: Date | undefined;
  statusMessage?: string | undefined;
  logStream?: string | undefined;
  gpus?: number | undefined;
  instanceType?: string | undefined;
  failureReason?: string | undefined;
  imageDetails?: ImageDetails | undefined;
  uuid?: string | undefined;
}
export interface GetS3AccessPolicyRequest {
  s3AccessPointArn: string | undefined;
}
export interface GetS3AccessPolicyResponse {
  s3AccessPointArn?: string | undefined;
  storeId?: string | undefined;
  storeType?: StoreType | undefined;
  updateTime?: Date | undefined;
  s3AccessPolicy: __AutomaticJsonStringConversion | string | undefined;
}
export interface GetSequenceStoreRequest {
  id: string | undefined;
}
export interface GetSequenceStoreResponse {
  id: string | undefined;
  arn: string | undefined;
  name?: string | undefined;
  description?: string | undefined;
  sseConfig?: SseConfig | undefined;
  creationTime: Date | undefined;
  fallbackLocation?: string | undefined;
  s3Access?: SequenceStoreS3Access | undefined;
  eTagAlgorithmFamily?: ETagAlgorithmFamily | undefined;
  status?: SequenceStoreStatus | undefined;
  statusMessage?: string | undefined;
  propagatedSetLevelTags?: string[] | undefined;
  updateTime?: Date | undefined;
}
export interface GetShareRequest {
  shareId: string | undefined;
}
export interface ShareDetails {
  shareId?: string | undefined;
  resourceArn?: string | undefined;
  resourceId?: string | undefined;
  principalSubscriber?: string | undefined;
  ownerId?: string | undefined;
  status?: ShareStatus | undefined;
  statusMessage?: string | undefined;
  shareName?: string | undefined;
  creationTime?: Date | undefined;
  updateTime?: Date | undefined;
}
export interface GetShareResponse {
  share?: ShareDetails | undefined;
}
export interface GetVariantImportRequest {
  jobId: string | undefined;
}
export interface VariantImportItemDetail {
  source: string | undefined;
  jobStatus: JobStatus | undefined;
  statusMessage?: string | undefined;
}
export interface GetVariantImportResponse {
  id: string | undefined;
  destinationName: string | undefined;
  roleArn: string | undefined;
  status: JobStatus | undefined;
  statusMessage: string | undefined;
  creationTime: Date | undefined;
  updateTime: Date | undefined;
  completionTime?: Date | undefined;
  items: VariantImportItemDetail[] | undefined;
  runLeftNormalization: boolean | undefined;
  annotationFields?: Record<string, string> | undefined;
}
export interface GetVariantStoreRequest {
  name: string | undefined;
}
export interface GetVariantStoreResponse {
  id: string | undefined;
  reference: ReferenceItem | undefined;
  status: StoreStatus | undefined;
  storeArn: string | undefined;
  name: string | undefined;
  description: string | undefined;
  sseConfig: SseConfig | undefined;
  creationTime: Date | undefined;
  updateTime: Date | undefined;
  tags: Record<string, string> | undefined;
  statusMessage: string | undefined;
  storeSizeBytes: number | undefined;
}
export interface GetWorkflowRequest {
  id: string | undefined;
  type?: WorkflowType | undefined;
  export?: WorkflowExport[] | undefined;
  workflowOwnerId?: string | undefined;
}
export interface GetWorkflowResponse {
  arn?: string | undefined;
  id?: string | undefined;
  status?: WorkflowStatus | undefined;
  type?: WorkflowType | undefined;
  name?: string | undefined;
  description?: string | undefined;
  engine?: WorkflowEngine | undefined;
  definition?: string | undefined;
  main?: string | undefined;
  digest?: string | undefined;
  parameterTemplate?: Record<string, WorkflowParameter> | undefined;
  storageCapacity?: number | undefined;
  creationTime?: Date | undefined;
  statusMessage?: string | undefined;
  tags?: Record<string, string> | undefined;
  metadata?: Record<string, string> | undefined;
  accelerators?: Accelerators | undefined;
  storageType?: StorageType | undefined;
  uuid?: string | undefined;
  containerRegistryMap?: ContainerRegistryMap | undefined;
  readme?: string | undefined;
  definitionRepositoryDetails?: DefinitionRepositoryDetails | undefined;
  readmePath?: string | undefined;
  profiles?: string[] | undefined;
  profileParameterTemplates?: Record<string, Record<string, WorkflowParameter>> | undefined;
}
export interface GetWorkflowVersionRequest {
  workflowId: string | undefined;
  versionName: string | undefined;
  type?: WorkflowType | undefined;
  export?: WorkflowExport[] | undefined;
  workflowOwnerId?: string | undefined;
}
export interface GetWorkflowVersionResponse {
  arn?: string | undefined;
  workflowId?: string | undefined;
  versionName?: string | undefined;
  accelerators?: Accelerators | undefined;
  creationTime?: Date | undefined;
  description?: string | undefined;
  definition?: string | undefined;
  digest?: string | undefined;
  engine?: WorkflowEngine | undefined;
  main?: string | undefined;
  metadata?: Record<string, string> | undefined;
  parameterTemplate?: Record<string, WorkflowParameter> | undefined;
  status?: WorkflowStatus | undefined;
  statusMessage?: string | undefined;
  storageType?: StorageType | undefined;
  storageCapacity?: number | undefined;
  type?: WorkflowType | undefined;
  tags?: Record<string, string> | undefined;
  uuid?: string | undefined;
  workflowBucketOwnerId?: string | undefined;
  containerRegistryMap?: ContainerRegistryMap | undefined;
  readme?: string | undefined;
  definitionRepositoryDetails?: DefinitionRepositoryDetails | undefined;
  readmePath?: string | undefined;
  profiles?: string[] | undefined;
  profileParameterTemplates?: Record<string, Record<string, WorkflowParameter>> | undefined;
}
export interface ImportReadSetFilter {
  status?: ReadSetImportJobStatus | undefined;
  createdAfter?: Date | undefined;
  createdBefore?: Date | undefined;
}
export interface ImportReadSetJobItem {
  id: string | undefined;
  sequenceStoreId: string | undefined;
  roleArn: string | undefined;
  status: ReadSetImportJobStatus | undefined;
  creationTime: Date | undefined;
  completionTime?: Date | undefined;
}
export interface ImportReferenceFilter {
  status?: ReferenceImportJobStatus | undefined;
  createdAfter?: Date | undefined;
  createdBefore?: Date | undefined;
}
export interface ImportReferenceJobItem {
  id: string | undefined;
  referenceStoreId: string | undefined;
  roleArn: string | undefined;
  status: ReferenceImportJobStatus | undefined;
  creationTime: Date | undefined;
  completionTime?: Date | undefined;
}
export interface ListBatchRequest {
  maxItems?: number | undefined;
  startingToken?: string | undefined;
  status?: BatchStatus | undefined;
  name?: string | undefined;
  runGroupId?: string | undefined;
}
export interface ListBatchResponse {
  items?: BatchListItem[] | undefined;
  nextToken?: string | undefined;
}
export interface ListMultipartReadSetUploadsRequest {
  sequenceStoreId: string | undefined;
  maxResults?: number | undefined;
  nextToken?: string | undefined;
}
export interface MultipartReadSetUploadListItem {
  sequenceStoreId: string | undefined;
  uploadId: string | undefined;
  sourceFileType: FileType | undefined;
  subjectId: string | undefined;
  sampleId: string | undefined;
  generatedFrom: string | undefined;
  referenceArn: string | undefined;
  name?: string | undefined;
  description?: string | undefined;
  tags?: Record<string, string> | undefined;
  creationTime: Date | undefined;
}
export interface ListMultipartReadSetUploadsResponse {
  nextToken?: string | undefined;
  uploads?: MultipartReadSetUploadListItem[] | undefined;
}
export interface ListReadSetActivationJobsRequest {
  sequenceStoreId: string | undefined;
  maxResults?: number | undefined;
  nextToken?: string | undefined;
  filter?: ActivateReadSetFilter | undefined;
}
export interface ListReadSetActivationJobsResponse {
  nextToken?: string | undefined;
  activationJobs?: ActivateReadSetJobItem[] | undefined;
}
export interface ListReadSetExportJobsRequest {
  sequenceStoreId: string | undefined;
  maxResults?: number | undefined;
  nextToken?: string | undefined;
  filter?: ExportReadSetFilter | undefined;
}
export interface ListReadSetExportJobsResponse {
  nextToken?: string | undefined;
  exportJobs?: ExportReadSetJobDetail[] | undefined;
}
export interface ListReadSetImportJobsRequest {
  maxResults?: number | undefined;
  nextToken?: string | undefined;
  sequenceStoreId: string | undefined;
  filter?: ImportReadSetFilter | undefined;
}
export interface ListReadSetImportJobsResponse {
  nextToken?: string | undefined;
  importJobs?: ImportReadSetJobItem[] | undefined;
}
export interface ReadSetFilter {
  name?: string | undefined;
  status?: ReadSetStatus | undefined;
  referenceArn?: string | undefined;
  createdAfter?: Date | undefined;
  createdBefore?: Date | undefined;
  sampleId?: string | undefined;
  subjectId?: string | undefined;
  generatedFrom?: string | undefined;
  creationType?: CreationType | undefined;
}
export interface ListReadSetsRequest {
  sequenceStoreId: string | undefined;
  maxResults?: number | undefined;
  nextToken?: string | undefined;
  filter?: ReadSetFilter | undefined;
}
export interface ReadSetListItem {
  id: string | undefined;
  arn: string | undefined;
  sequenceStoreId: string | undefined;
  subjectId?: string | undefined;
  sampleId?: string | undefined;
  status: ReadSetStatus | undefined;
  name?: string | undefined;
  description?: string | undefined;
  referenceArn?: string | undefined;
  fileType: FileType | undefined;
  sequenceInformation?: SequenceInformation | undefined;
  creationTime: Date | undefined;
  statusMessage?: string | undefined;
  creationType?: CreationType | undefined;
  etag?: ETag | undefined;
}
export interface ListReadSetsResponse {
  nextToken?: string | undefined;
  readSets: ReadSetListItem[] | undefined;
}
export interface ReadSetUploadPartListFilter {
  createdAfter?: Date | undefined;
  createdBefore?: Date | undefined;
}
export interface ListReadSetUploadPartsRequest {
  sequenceStoreId: string | undefined;
  uploadId: string | undefined;
  partSource: ReadSetPartSource | undefined;
  maxResults?: number | undefined;
  nextToken?: string | undefined;
  filter?: ReadSetUploadPartListFilter | undefined;
}
export interface ReadSetUploadPartListItem {
  partNumber: number | undefined;
  partSize: number | undefined;
  partSource: ReadSetPartSource | undefined;
  checksum: string | undefined;
  creationTime?: Date | undefined;
  lastUpdatedTime?: Date | undefined;
}
export interface ListReadSetUploadPartsResponse {
  nextToken?: string | undefined;
  parts?: ReadSetUploadPartListItem[] | undefined;
}
export interface ListReferenceImportJobsRequest {
  maxResults?: number | undefined;
  nextToken?: string | undefined;
  referenceStoreId: string | undefined;
  filter?: ImportReferenceFilter | undefined;
}
export interface ListReferenceImportJobsResponse {
  nextToken?: string | undefined;
  importJobs?: ImportReferenceJobItem[] | undefined;
}
export interface ReferenceFilter {
  name?: string | undefined;
  md5?: string | undefined;
  createdAfter?: Date | undefined;
  createdBefore?: Date | undefined;
}
export interface ListReferencesRequest {
  referenceStoreId: string | undefined;
  maxResults?: number | undefined;
  nextToken?: string | undefined;
  filter?: ReferenceFilter | undefined;
}
export interface ReferenceListItem {
  id: string | undefined;
  arn: string | undefined;
  referenceStoreId: string | undefined;
  md5: string | undefined;
  status?: ReferenceStatus | undefined;
  name?: string | undefined;
  description?: string | undefined;
  creationTime: Date | undefined;
  updateTime: Date | undefined;
}
export interface ListReferencesResponse {
  nextToken?: string | undefined;
  references: ReferenceListItem[] | undefined;
}
export interface ReferenceStoreFilter {
  name?: string | undefined;
  createdAfter?: Date | undefined;
  createdBefore?: Date | undefined;
}
export interface ListReferenceStoresRequest {
  maxResults?: number | undefined;
  nextToken?: string | undefined;
  filter?: ReferenceStoreFilter | undefined;
}
export interface ReferenceStoreDetail {
  arn: string | undefined;
  id: string | undefined;
  name?: string | undefined;
  description?: string | undefined;
  sseConfig?: SseConfig | undefined;
  creationTime: Date | undefined;
}
export interface ListReferenceStoresResponse {
  nextToken?: string | undefined;
  referenceStores: ReferenceStoreDetail[] | undefined;
}
export interface ListRunCachesRequest {
  maxResults?: number | undefined;
  startingToken?: string | undefined;
}
export interface RunCacheListItem {
  arn?: string | undefined;
  cacheBehavior?: CacheBehavior | undefined;
  cacheS3Uri?: string | undefined;
  creationTime?: Date | undefined;
  id?: string | undefined;
  name?: string | undefined;
  status?: RunCacheStatus | undefined;
}
export interface ListRunCachesResponse {
  items?: RunCacheListItem[] | undefined;
  nextToken?: string | undefined;
}
export interface ListRunGroupsRequest {
  name?: string | undefined;
  startingToken?: string | undefined;
  maxResults?: number | undefined;
}
export interface RunGroupListItem {
  arn?: string | undefined;
  id?: string | undefined;
  name?: string | undefined;
  maxCpus?: number | undefined;
  maxRuns?: number | undefined;
  maxDuration?: number | undefined;
  creationTime?: Date | undefined;
  maxGpus?: number | undefined;
}
export interface ListRunGroupsResponse {
  items?: RunGroupListItem[] | undefined;
  nextToken?: string | undefined;
}
export interface ListRunsRequest {
  name?: string | undefined;
  runGroupId?: string | undefined;
  batchId?: string | undefined;
  startingToken?: string | undefined;
  maxResults?: number | undefined;
  status?: RunStatus | undefined;
}
export interface RunListItem {
  arn?: string | undefined;
  id?: string | undefined;
  status?: RunStatus | undefined;
  workflowId?: string | undefined;
  batchId?: string | undefined;
  name?: string | undefined;
  priority?: number | undefined;
  storageCapacity?: number | undefined;
  creationTime?: Date | undefined;
  startTime?: Date | undefined;
  stopTime?: Date | undefined;
  storageType?: StorageType | undefined;
  workflowVersionName?: string | undefined;
  workflowName?: string | undefined;
}
export interface ListRunsResponse {
  items?: RunListItem[] | undefined;
  nextToken?: string | undefined;
}
export interface ListRunsInBatchRequest {
  batchId: string | undefined;
  maxItems?: number | undefined;
  startingToken?: string | undefined;
  submissionStatus?: SubmissionStatus | undefined;
  runSettingId?: string | undefined;
  runId?: string | undefined;
}
export interface RunBatchListItem {
  runSettingId?: string | undefined;
  runId?: string | undefined;
  runInternalUuid?: string | undefined;
  runArn?: string | undefined;
  submissionStatus?: SubmissionStatus | undefined;
  submissionFailureReason?: string | undefined;
  submissionFailureMessage?: string | undefined;
}
export interface ListRunsInBatchResponse {
  runs?: RunBatchListItem[] | undefined;
  nextToken?: string | undefined;
}
export interface ListRunTasksRequest {
  id: string | undefined;
  status?: TaskStatus | undefined;
  startingToken?: string | undefined;
  maxResults?: number | undefined;
}
export interface TaskListItem {
  taskId?: string | undefined;
  status?: TaskStatus | undefined;
  name?: string | undefined;
  cpus?: number | undefined;
  cacheHit?: boolean | undefined;
  cacheS3Uri?: string | undefined;
  memory?: number | undefined;
  creationTime?: Date | undefined;
  startTime?: Date | undefined;
  stopTime?: Date | undefined;
  gpus?: number | undefined;
  instanceType?: string | undefined;
  uuid?: string | undefined;
}
export interface ListRunTasksResponse {
  items?: TaskListItem[] | undefined;
  nextToken?: string | undefined;
}
export interface SequenceStoreFilter {
  name?: string | undefined;
  createdAfter?: Date | undefined;
  createdBefore?: Date | undefined;
  status?: SequenceStoreStatus | undefined;
  updatedAfter?: Date | undefined;
  updatedBefore?: Date | undefined;
}
export interface ListSequenceStoresRequest {
  maxResults?: number | undefined;
  nextToken?: string | undefined;
  filter?: SequenceStoreFilter | undefined;
}
export interface SequenceStoreDetail {
  arn: string | undefined;
  id: string | undefined;
  name?: string | undefined;
  description?: string | undefined;
  sseConfig?: SseConfig | undefined;
  creationTime: Date | undefined;
  fallbackLocation?: string | undefined;
  eTagAlgorithmFamily?: ETagAlgorithmFamily | undefined;
  status?: SequenceStoreStatus | undefined;
  statusMessage?: string | undefined;
  updateTime?: Date | undefined;
}
export interface ListSequenceStoresResponse {
  nextToken?: string | undefined;
  sequenceStores: SequenceStoreDetail[] | undefined;
}
export interface ListSharesRequest {
  resourceOwner: ResourceOwner | undefined;
  filter?: Filter | undefined;
  nextToken?: string | undefined;
  maxResults?: number | undefined;
}
export interface ListSharesResponse {
  shares: ShareDetails[] | undefined;
  nextToken?: string | undefined;
}
export interface ListTagsForResourceRequest {
  resourceArn: string | undefined;
}
export interface ListTagsForResourceResponse {
  tags: Record<string, string> | undefined;
}
export interface ListVariantImportJobsFilter {
  status?: JobStatus | undefined;
  storeName?: string | undefined;
}
export interface ListVariantImportJobsRequest {
  maxResults?: number | undefined;
  ids?: string[] | undefined;
  nextToken?: string | undefined;
  filter?: ListVariantImportJobsFilter | undefined;
}
export interface VariantImportJobItem {
  id: string | undefined;
  destinationName: string | undefined;
  roleArn: string | undefined;
  status: JobStatus | undefined;
  creationTime: Date | undefined;
  updateTime: Date | undefined;
  completionTime?: Date | undefined;
  runLeftNormalization?: boolean | undefined;
  annotationFields?: Record<string, string> | undefined;
}
export interface ListVariantImportJobsResponse {
  variantImportJobs?: VariantImportJobItem[] | undefined;
  nextToken?: string | undefined;
}
export interface ListVariantStoresFilter {
  status?: StoreStatus | undefined;
}
export interface ListVariantStoresRequest {
  maxResults?: number | undefined;
  ids?: string[] | undefined;
  nextToken?: string | undefined;
  filter?: ListVariantStoresFilter | undefined;
}
export interface VariantStoreItem {
  id: string | undefined;
  reference: ReferenceItem | undefined;
  status: StoreStatus | undefined;
  storeArn: string | undefined;
  name: string | undefined;
  description: string | undefined;
  sseConfig: SseConfig | undefined;
  creationTime: Date | undefined;
  updateTime: Date | undefined;
  statusMessage: string | undefined;
  storeSizeBytes: number | undefined;
}
export interface ListVariantStoresResponse {
  variantStores?: VariantStoreItem[] | undefined;
  nextToken?: string | undefined;
}
export interface ListWorkflowsRequest {
  type?: WorkflowType | undefined;
  name?: string | undefined;
  startingToken?: string | undefined;
  maxResults?: number | undefined;
}
export interface WorkflowListItem {
  arn?: string | undefined;
  id?: string | undefined;
  name?: string | undefined;
  status?: WorkflowStatus | undefined;
  type?: WorkflowType | undefined;
  digest?: string | undefined;
  creationTime?: Date | undefined;
  metadata?: Record<string, string> | undefined;
}
export interface ListWorkflowsResponse {
  items?: WorkflowListItem[] | undefined;
  nextToken?: string | undefined;
}
export interface ListWorkflowVersionsRequest {
  workflowId: string | undefined;
  type?: WorkflowType | undefined;
  workflowOwnerId?: string | undefined;
  startingToken?: string | undefined;
  maxResults?: number | undefined;
}
export interface WorkflowVersionListItem {
  arn?: string | undefined;
  workflowId?: string | undefined;
  versionName?: string | undefined;
  description?: string | undefined;
  status?: WorkflowStatus | undefined;
  type?: WorkflowType | undefined;
  digest?: string | undefined;
  creationTime?: Date | undefined;
  metadata?: Record<string, string> | undefined;
}
export interface ListWorkflowVersionsResponse {
  items?: WorkflowVersionListItem[] | undefined;
  nextToken?: string | undefined;
}
export interface PutS3AccessPolicyRequest {
  s3AccessPointArn: string | undefined;
  s3AccessPolicy: __AutomaticJsonStringConversion | string | undefined;
}
export interface PutS3AccessPolicyResponse {
  s3AccessPointArn?: string | undefined;
  storeId?: string | undefined;
  storeType?: StoreType | undefined;
}
export interface StartReferenceImportJobSourceItem {
  sourceFile: string | undefined;
  name: string | undefined;
  description?: string | undefined;
  tags?: Record<string, string> | undefined;
}
export interface StartReferenceImportJobRequest {
  referenceStoreId: string | undefined;
  roleArn: string | undefined;
  clientToken?: string | undefined;
  sources: StartReferenceImportJobSourceItem[] | undefined;
}
export interface StartReferenceImportJobResponse {
  id: string | undefined;
  referenceStoreId: string | undefined;
  roleArn: string | undefined;
  status: ReferenceImportJobStatus | undefined;
  creationTime: Date | undefined;
}
export interface StartRunBatchRequest {
  batchName?: string | undefined;
  requestId?: string | undefined;
  tags?: Record<string, string> | undefined;
  defaultRunSetting: DefaultRunSetting | undefined;
  batchRunSettings: BatchRunSettings | undefined;
}
export interface StartRunBatchResponse {
  id?: string | undefined;
  arn?: string | undefined;
  status?: BatchStatus | undefined;
  uuid?: string | undefined;
  tags?: Record<string, string> | undefined;
}
export interface UpdateRunCacheRequest {
  cacheBehavior?: CacheBehavior | undefined;
  description?: string | undefined;
  id: string | undefined;
  name?: string | undefined;
}
export interface UpdateRunGroupRequest {
  id: string | undefined;
  name?: string | undefined;
  maxCpus?: number | undefined;
  maxRuns?: number | undefined;
  maxDuration?: number | undefined;
  maxGpus?: number | undefined;
}
export interface StartRunRequest {
  workflowId?: string | undefined;
  workflowType?: WorkflowType | undefined;
  runId?: string | undefined;
  roleArn: string | undefined;
  name?: string | undefined;
  cacheId?: string | undefined;
  cacheBehavior?: CacheBehavior | undefined;
  runGroupId?: string | undefined;
  priority?: number | undefined;
  parameters?: __DocumentType | undefined;
  storageCapacity?: number | undefined;
  outputUri: string | undefined;
  logLevel?: RunLogLevel | undefined;
  tags?: Record<string, string> | undefined;
  requestId?: string | undefined;
  retentionMode?: RunRetentionMode | undefined;
  storageType?: StorageType | undefined;
  workflowOwnerId?: string | undefined;
  workflowVersionName?: string | undefined;
  networkingMode?: NetworkingMode | undefined;
  scratchStorageMode?: ScratchStorageMode | undefined;
  configurationName?: string | undefined;
  engineSettings?: __DocumentType | undefined;
}
export interface StartRunResponse {
  arn?: string | undefined;
  id?: string | undefined;
  status?: RunStatus | undefined;
  tags?: Record<string, string> | undefined;
  uuid?: string | undefined;
  runOutputUri?: string | undefined;
  configuration?: ConfigurationDetails | undefined;
  networkingMode?: string | undefined;
}
export interface StartReadSetActivationJobSourceItem {
  readSetId: string | undefined;
}
export interface StartReadSetActivationJobRequest {
  sequenceStoreId: string | undefined;
  clientToken?: string | undefined;
  sources: StartReadSetActivationJobSourceItem[] | undefined;
}
export interface StartReadSetActivationJobResponse {
  id: string | undefined;
  sequenceStoreId: string | undefined;
  status: ReadSetActivationJobStatus | undefined;
  creationTime: Date | undefined;
}
export interface StartReadSetExportJobRequest {
  sequenceStoreId: string | undefined;
  destination: string | undefined;
  roleArn: string | undefined;
  clientToken?: string | undefined;
  sources: ExportReadSet[] | undefined;
}
export interface StartReadSetExportJobResponse {
  id: string | undefined;
  sequenceStoreId: string | undefined;
  destination: string | undefined;
  status: ReadSetExportJobStatus | undefined;
  creationTime: Date | undefined;
}
export interface StartReadSetImportJobSourceItem {
  sourceFiles: SourceFiles | undefined;
  sourceFileType: FileType | undefined;
  subjectId: string | undefined;
  sampleId: string | undefined;
  generatedFrom?: string | undefined;
  referenceArn?: string | undefined;
  name?: string | undefined;
  description?: string | undefined;
  tags?: Record<string, string> | undefined;
}
export interface StartReadSetImportJobRequest {
  sequenceStoreId: string | undefined;
  roleArn: string | undefined;
  clientToken?: string | undefined;
  sources: StartReadSetImportJobSourceItem[] | undefined;
}
export interface StartReadSetImportJobResponse {
  id: string | undefined;
  sequenceStoreId: string | undefined;
  roleArn: string | undefined;
  status: ReadSetImportJobStatus | undefined;
  creationTime: Date | undefined;
}
export interface UpdateSequenceStoreRequest {
  id: string | undefined;
  name?: string | undefined;
  description?: string | undefined;
  clientToken?: string | undefined;
  fallbackLocation?: string | undefined;
  propagatedSetLevelTags?: string[] | undefined;
  s3AccessConfig?: S3AccessConfig | undefined;
}
export interface UpdateSequenceStoreResponse {
  id: string | undefined;
  arn: string | undefined;
  name?: string | undefined;
  description?: string | undefined;
  sseConfig?: SseConfig | undefined;
  creationTime: Date | undefined;
  updateTime?: Date | undefined;
  propagatedSetLevelTags?: string[] | undefined;
  status?: SequenceStoreStatus | undefined;
  statusMessage?: string | undefined;
  fallbackLocation?: string | undefined;
  s3Access?: SequenceStoreS3Access | undefined;
  eTagAlgorithmFamily?: ETagAlgorithmFamily | undefined;
}
export interface UploadReadSetPartRequest {
  sequenceStoreId: string | undefined;
  uploadId: string | undefined;
  partSource: ReadSetPartSource | undefined;
  partNumber: number | undefined;
  payload: StreamingBlobTypes | undefined;
}
export interface UploadReadSetPartResponse {
  checksum: string | undefined;
}
export interface TagResourceRequest {
  resourceArn: string | undefined;
  tags: Record<string, string> | undefined;
}
export interface TagResourceResponse {}
export interface UntagResourceRequest {
  resourceArn: string | undefined;
  tagKeys: string[] | undefined;
}
export interface UntagResourceResponse {}
export interface VariantImportItemSource {
  source: string | undefined;
}
export interface StartVariantImportRequest {
  destinationName: string | undefined;
  roleArn: string | undefined;
  items: VariantImportItemSource[] | undefined;
  runLeftNormalization?: boolean | undefined;
  annotationFields?: Record<string, string> | undefined;
}
export interface StartVariantImportResponse {
  jobId: string | undefined;
}
export interface UpdateVariantStoreRequest {
  name: string | undefined;
  description?: string | undefined;
}
export interface UpdateVariantStoreResponse {
  id: string | undefined;
  reference: ReferenceItem | undefined;
  status: StoreStatus | undefined;
  name: string | undefined;
  description: string | undefined;
  creationTime: Date | undefined;
  updateTime: Date | undefined;
}
export interface UpdateWorkflowRequest {
  id: string | undefined;
  name?: string | undefined;
  description?: string | undefined;
  storageType?: StorageType | undefined;
  storageCapacity?: number | undefined;
  readmeMarkdown?: string | undefined;
}
export interface UpdateWorkflowVersionRequest {
  workflowId: string | undefined;
  versionName: string | undefined;
  description?: string | undefined;
  storageType?: StorageType | undefined;
  storageCapacity?: number | undefined;
  readmeMarkdown?: string | undefined;
}