import { JobStatusClient } from "@aics/job-status-client";
import { JSSJob } from "@aics/job-status-client/type-declarations/types";
import { FSSConnection, LabKeyConnection, MMSConnection } from "./connections";
import { CustomMetadataQuerier } from "./custom-metadata-querier";
import { FileManagementSystemConfig, FileMetadata, FileToFileMetadata, ImageModelMetadata, StartUploadResponse, UploadResponse, Uploads } from "./types";
import { Uploader } from "./uploader";
export declare const getDuplicateFilesError: (name: string) => string;
export declare const getFileDoesNotExistError: (fullpath: string) => string;
export declare const getFilePropertyMissingError: (fullpath: string) => string;
export declare const getFileTypePropertyMissingError: (fullpath: string) => string;
export declare const noFilesError = "No files were included in the request";
export declare const getOriginalPathPropertyMissingError: (fullpath: string) => string;
export declare const getOriginalPathPropertyDoesntMatch: (fullpath: string, originalPath: string) => string;
export declare const AICSFILES_LOGGER = "aicsfiles";
export declare const getCopyChildJobName: (filepath: string) => string;
export declare class FileManagementSystem {
    readonly fss: FSSConnection;
    readonly mms: MMSConnection;
    readonly lk: LabKeyConnection;
    readonly jobStatusClient: JobStatusClient;
    private readonly logger;
    readonly uploader: Uploader;
    readonly customMetadataQuerier: CustomMetadataQuerier;
    static innerJoinFileMetadata(fileMetadata1: FileToFileMetadata, fileMetadata2: FileToFileMetadata): FileToFileMetadata;
    get port(): string;
    set port(port: string);
    get host(): string;
    set host(host: string);
    get username(): string;
    set username(username: string);
    get mountPoint(): string;
    setMountPoint: (mountPoint: string) => Promise<void>;
    constructor(config: FileManagementSystemConfig);
    /***
     * Check for duplicate file names in a metadata mapping.
     FSS will allow multiple files with the same name to be uploaded, but ultimately only
     the most recently added will have precedence. This will raise an exception if a file
     with a duplicate name (but in a different folder) is found
     * @param metadata
     * @param uploadJobName
     * Throws InvalidMetadataError if a file was not found or if more than one files have the same name
     * returns StartUploadResponse
     */
    validateMetadataAndGetUploadDirectory(metadata: Uploads, uploadJobName: string): Promise<StartUploadResponse>;
    /***
     * Uploads one or more files and saves metadata associated with each file
     * @param startUploadResponse
     * @param uploads an object where the keys are fullpaths of the files to upload and the values are
     * metadata objects whose structures are defined by
     * http://confluence.corp.alleninstitute.org/display/SF/Metadata+Structure+for+Files+in+FMS
     * @param jobName Used to identify messages sent by aicsfiles.
     * @param copyProgressCb Optional callback that takes total bytes copied as param and does something with it
     * @param copyProgressCbThrottleMs minimum amount of ms between calls to copyProgressCb
     */
    uploadFiles(startUploadResponse: StartUploadResponse, uploads: Uploads, jobName: string, copyProgressCb?: (originalFilePath: string, bytesCopied: number, totalBytes: number) => void, copyProgressCbThrottleMs?: number): Promise<UploadResponse>;
    retryUpload(uploadJob: JSSJob, copyProgressCb?: (originalFilePath: string, bytesCopied: number, totalBytes: number) => void, copyProgressCbThrottleMs?: number): Promise<UploadResponse>;
    /**
     * Marks a job and its children as failed in JSS.
     * @param jobId - ID of the JSS Job to fail.
     * @param failureMessage - Optional message that will be written to
     * `serviceFields.mostRecentFailure`. Defaults to "Job failed".
     * @param failureStatus - Optional status to fail the job with. Defaults to
     * "FAILED".
     * @param setError - Also set `serviceFields.error` to `failureMessage`.
     */
    failUpload(jobId: string, failureMessage?: string, failureStatus?: "FAILED" | "UNRECOVERABLE", setError?: boolean): Promise<JSSJob[]>;
    getFilesByAnnotation(annotationName: string, searchValue: string): Promise<FileToFileMetadata>;
    getCustomMetadataForFile(fileId: string): Promise<FileMetadata>;
    getFilesByUser(userName: string): Promise<FileToFileMetadata>;
    getFilesByTemplate(templateId: number): Promise<FileToFileMetadata>;
    transformFileMetadataIntoTable(fileToFileMetadata: FileToFileMetadata, transformDates?: boolean): Promise<ImageModelMetadata[]>;
    transformTableIntoCSV(header: string[], rows: ImageModelMetadata[], separator?: string): string;
}