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Example input files for HaploPainter 
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The input files from the folders example1-example4 must be imported by using the following sequence
1. File --> Import Pedigrees ... --> Linkage
2. File --> Import Haplotypes ... --> [ choose ]
3. File --> Import Map File ... --> CHR-POS-MARKER


Folder: example1 (Genehunter)
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Genhunter input files:
1. pedfile.pre --> LINKAGE pedfile
2. haplo.dump --> Genhunter haplotype result file
3. map.txt --> map file (CHR-POS-MARKER)


Folder: example2 (Simwalk2)
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Simwalk2 input files:
1. pedfile.pre --> LINKAGE pedfile
2. HAPLO-01.001 --> Simwalk2 haplotype result file in horizontal orientation
3. map.txt --> map file (CHR-POS-MARKER)


Folder: example3 (Merlin)
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Merlin input files:
1. pedfile.pre --> LINKAGE pedfile
2. merlin.chr --> Merlin haplotype result file in vertical orientation
3. map.txt --> map file (CHR-POS-MARKER)


Folder: example4 (Allegro)
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Allegro input files:
1. pedfile.pre --> LINKAGE pedfile
2. ihaplo.out --> Allegro haplotype result file
3. founder.out --> alternative Allegro haplotype result file
4. map.txt --> map file (CHR-POS-MARKER)


hp_examples1-4.hp
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Into HaploPainter imported examples1-4 were saved in HAPLOPAINTER format.
Use the Open command to import this file


hp_testsuite_linkage.ped
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More then 30 pedigrees in LINKAGE format which were used as test pedigrees.
Use the Import Pedigree ... function or press key F1 


hp_testsuite_linkage.hp
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The same pedigrees which can be found in the hp_testsuite_linkage.ped file but saved in HAPLOPAINTER format
Use the Open command to import this file


hp_family-1.hp
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A family demonstraiting advanced features including twins, consanguinity, Unicode and more was saved in HAPLOPAINTER format
Use the Open command to import this file

hpcsv_family-1.utf8
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The same family from the hp_family-1.hp file but exported as CSV format using UTF-8 encoding.
You can edit the file with the most Text Editors. A font which is able to show all signs is Arial Unicode MS.

hpcsv_family-1.utf16le.csv
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The same family from the hp_family-1.hp file but exported as CSV format using UTF-16LE encoding.
You can edit the file with the most Text Editors or Microsoft Excel. A font which is able to show all signs is Arial Unicode MS.


