edu/cmu/tetrad/search/IndTestFisherZRecursive.class edu/cmu/tetrad/gene/tetrad/gene/graph/ManualActiveLagGraph.class edu/cmu/tetrad/search/FciDsepLegalPairs.class edu/cmu/tetrad/util/dist/Indicator.class edu/cmu/tetrad/search/SepsetsPossibleDsep.class edu/cmu/tetrad/search/LocalScoreCache.class edu/cmu/tetrad/search/Ling.class edu/cmu/tetrad/data/GeneralAndersonDarlingTest.class edu/cmu/tetrad/search/FciMax.class edu/cmu/tetrad/data/TimeSeriesData.class edu/cmu/tetrad/algcomparison/graph/RandomSingleFactorMim.class edu/cmu/tetrad/graph/TimeLagGraph$1.class edu/cmu/tetrad/search/FgesMb$Arrow.class edu/cmu/tetrad/search/MimbuildTrek$Function3.class edu/cmu/tetrad/gene/tetrad/gene/history/DishModel.class edu/cmu/tetrad/algcomparison/graph/SingleGraph.class edu/cmu/tetrad/search/ContinuousTetradTest$1.class edu/cmu/tetrad/search/Kpc.class edu/cmu/tetrad/search/IndTestProbabilistic.class edu/cmu/tetrad/sem/GeneralizedSemIm$6.class edu/cmu/tetrad/search/FgesOld.class edu/cmu/tetrad/algcomparison/graph/ScaleFree.class edu/cmu/tetrad/sem/GeneralizedSemIm.class edu/cmu/tetrad/search/SepsetsConservative.class edu/cmu/tetrad/calculator/expression/ExpressionManager$LessThanOrEqualExpressionDescriptor$1.class edu/cmu/tetrad/data/DataReader.class edu/cmu/tetrad/search/MixedBicScore.class edu/cmu/tetrad/search/SemLikelihood2$Ret.class edu/cmu/tetrad/calculator/parser/ExpressionParser$RestrictionType.class edu/cmu/tetrad/search/OrientCollidersMaxP.class edu/cmu/tetrad/data/DiscreteVariableType.class edu/cmu/tetrad/util/IM.class edu/cmu/tetrad/search/Hungarian.class edu/cmu/tetrad/graph/GraphUtils$1.class edu/cmu/tetrad/search/FciOrient.class edu/cmu/tetrad/search/GraphChange.class edu/cmu/tetrad/algcomparison/simulation/ConditionalGaussianSimulation$VariableValues.class edu/cmu/tetrad/data/BigDataSetUtility.class edu/cmu/tetrad/gene/tetrad/gene/history/UpdateFunction.class edu/cmu/tetrad/search/FgesMb$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$CauchyExpressionDescriptor$1.class edu/cmu/tetrad/search/IndTestDSepDiminishingPathStrengths.class edu/cmu/tetrad/regression/LogisticRegression.class edu/cmu/tetrad/bayes/BayesImDistanceFunction.class edu/cmu/tetrad/search/IonLegalPairs.class edu/cmu/tetrad/calculator/expression/AbstractExpressionDescriptor.class edu/cmu/tetrad/gene/tetradapp/model/MeasurementSimulatorParams.class edu/cmu/tetrad/search/AdLeafTree$1.class edu/cmu/tetrad/search/Ccd.class edu/cmu/tetrad/search/FgesD$2InitializeFromExistingGraphTask.class edu/cmu/tetrad/data/MixedDataBox.class edu/cmu/tetrad/calculator/expression/ExpressionManager$NaturalLogExpressionDescriptor$1.class edu/cmu/tetrad/graph/FruchtermanReingoldLayout$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$TProductExpressionDescriptor.class edu/cmu/tetrad/search/mb/MmmbGraphRestricted$MaxMinAssocResult.class edu/cmu/tetrad/calculator/parser/ExpressionParser.class edu/cmu/tetrad/search/VcpcFast$1.class edu/cmu/tetrad/algcomparison/simulation/LoadContinuousDataAndGraphs.class edu/cmu/tetrad/bayes/MlBayesEstimator.class edu/cmu/tetrad/bayes/CptInvariantUpdater.class edu/cmu/tetrad/search/Mimbuild2$Function4.class edu/cmu/tetrad/calculator/expression/ExpressionManager$TruncNormalExpressionDescriptor.class edu/cmu/tetrad/search/TsGFci.class edu/cmu/tetrad/util/DataUtility.class edu/cmu/tetrad/calculator/expression/ExpressionManager$FloorExpressionDescriptor.class edu/cmu/tetrad/search/EFang.class edu/cmu/tetrad/search/FgesMb$1InitializeFromEmptyGraphTask.class edu/cmu/tetrad/search/ResolveSepsets.class edu/cmu/tetrad/search/SearchGraphUtils.class edu/cmu/tetrad/calculator/expression/ExpressionManager$LogisticExpressionDescriptor.class edu/cmu/tetrad/search/IndTestMixedMultipleTTest.class edu/cmu/tetrad/search/Nlo.class edu/cmu/tetrad/search/BicScore.class edu/cmu/tetrad/data/CovarianceMatrix.class edu/cmu/tetrad/util/dist/Poisson.class edu/cmu/tetrad/search/XdslXmlConstants.class edu/cmu/tetrad/bayes/BayesUpdater.class edu/cmu/tetrad/search/DagToPag.class edu/cmu/tetrad/util/JOptionUtils.class edu/cmu/tetrad/util/TetradSerializableExcluded.class edu/cmu/tetrad/search/Cci.class edu/cmu/tetrad/search/IndTestLaggedRegression.class edu/cmu/tetrad/search/Lofs2$1.class edu/cmu/tetrad/data/BoxDataSet.class edu/cmu/tetrad/search/PossibleDsepFci.class edu/cmu/tetrad/search/FgesOrienter$Arrow.class edu/cmu/tetrad/search/Vcpc.class edu/cmu/tetrad/search/ExperimentalSetup.class edu/cmu/tetrad/search/BffGes.class edu/cmu/tetrad/search/TimeSeriesUtils.class edu/cmu/tetrad/bayes/QList.class edu/cmu/tetrad/bayes/FactoredBayesStructuralEM$TimedIterate.class edu/cmu/tetrad/search/mb/IambnPc.class edu/cmu/tetrad/search/TsFges2$2InitializeFromExistingGraphTask.class edu/cmu/tetrad/calculator/expression/ExpressionManager$BetaExpressionDescriptor.class edu/cmu/tetrad/calculator/expression/ExpressionManager$SquareRootExpressionDescriptor.class edu/cmu/tetrad/gene/tetrad/gene/history/LagGraph.class edu/cmu/tetrad/graph/MeasuredLatentOnly.class edu/cmu/tetrad/gene/tetrad/gene/history/BasalInitializer.class edu/cmu/tetrad/search/AdTrees.class edu/cmu/tetrad/search/FasStableConcurrent$1Depth0Task.class edu/cmu/tetrad/data/Knowledge2.class edu/cmu/tetrad/gene/tetrad/gene/graph/RandomActiveLagGraph.class edu/cmu/tetrad/data/ByteDataBox.class edu/cmu/tetrad/search/BffBeam$GraphWithPValue.class edu/cmu/tetrad/gene/tetrad/gene/graph/LagGraphParams.class edu/cmu/tetrad/search/CcdMax$Pair.class edu/cmu/tetrad/search/SampleVcpc.class edu/cmu/tetrad/algcomparison/statistic/utils/AdjacencyConfusion.class edu/cmu/tetrad/search/TestType.class edu/cmu/tetrad/search/PcStable.class edu/cmu/tetrad/search/SepsetsMaxPValue.class edu/cmu/tetrad/util/JsonUtils.class edu/cmu/tetrad/calculator/expression/ExpressionManager$SubtractionExpressionDescriptor$1.class edu/cmu/tetrad/algcomparison/simulation/SemSimulation.class edu/cmu/tetrad/sem/Mapping.class edu/cmu/tetrad/search/DMSearch$1.class edu/cmu/tetrad/search/FasStableConcurrentFdr$1Depth0Task2.class edu/cmu/tetrad/search/Fci.class edu/cmu/tetrad/sem/LargeScaleSimulation$1SimulateTask.class edu/cmu/tetrad/data/KnowledgeGroup.class edu/cmu/tetrad/bayes/BayesXmlRenderer.class edu/cmu/tetrad/calculator/expression/ExpressionManager$MinExpressionDescriptor.class edu/pitt/dbmi/algo/bayesian/constraint/inference/BCInference$OP.class edu/cmu/tetrad/calculator/expression/ExpressionManager$SwitchExpressionDescriptor$1.class edu/cmu/tetrad/calculator/Transformation$DataBackedContext.class edu/cmu/tetrad/search/DagIterator.class edu/cmu/tetrad/search/GrowShrink.class edu/cmu/tetrad/data/CaseExpander.class edu/cmu/tetrad/graph/GraphGroup.class edu/cmu/tetrad/search/FgesD$Arrow.class edu/cmu/tetrad/search/GwpResult$AdjacencyEvaluationResult.class edu/cmu/tetrad/algcomparison/simulation/LoadDataAndGraphs.class edu/cmu/tetrad/search/PcPattern.class edu/cmu/tetrad/calculator/expression/Expression.class edu/cmu/tetrad/search/FastIca$IcaResult.class edu/cmu/tetrad/search/BffBeam$Move$Type.class edu/cmu/tetrad/util/dist/Beta.class edu/cmu/tetrad/graph/NoEdgesToSelf.class edu/cmu/tetrad/graph/KamadaKawaiLayout.class edu/cmu/tetrad/gene/tetrad/gene/history/BooleanGlassFunction.class edu/cmu/tetrad/graph/Triple.class edu/cmu/tetrad/gene/tetradapp/model/GenePm.class edu/cmu/tetrad/sem/LargeScaleSimulation.class edu/cmu/tetrad/search/Fges$1InitializeFromExistingGraphTask.class edu/cmu/tetrad/graph/NodeType.class edu/cmu/tetrad/search/FgesMb$NodeTaskEmptyGraph.class edu/cmu/tetrad/search/Dci$PowerSet.class edu/cmu/tetrad/regression/LogisticRegression2.class edu/cmu/tetrad/sem/SemStdErrorEstimator.class edu/cmu/tetrad/search/ProbFci.class edu/cmu/tetrad/search/ConditionalGaussianScore.class edu/cmu/tetrad/search/Test.class edu/cmu/tetrad/search/BuildPureClusters.class edu/cmu/tetrad/search/IndTestPartialCorrelation.class edu/cmu/tetrad/search/FgesOld$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$LevyExpressionDescriptor$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$StudentTExpressionDescriptor.class edu/cmu/tetrad/data/DataUtils$1.class edu/cmu/tetrad/search/FgesD$1BackwardTask.class edu/cmu/tetrad/search/GwpResult$OrientationEvaluationResult.class edu/cmu/tetrad/gene/tetrad/gene/history/IndexedConnectivity.class edu/cmu/tetrad/gene/tetrad/gene/history/LinearFunction.class edu/cmu/tetrad/search/IndTestCramerT.class edu/cmu/tetrad/calculator/expression/ExpressionManager$EqualsExpressionDescriptor.class edu/cmu/tetrad/search/Lingam.class edu/cmu/tetrad/calculator/expression/ExpressionManager$SinhExpressionDescriptor$1.class edu/cmu/tetrad/data/LongDataBox.class edu/cmu/tetrad/graph/Node.class edu/cmu/tetrad/search/SearchGraphUtils$ReachabilityEdge.class edu/cmu/tetrad/calculator/expression/ExpressionManager$ExponentialExpressionDescriptor$1.class edu/cmu/tetrad/data/AndersonDarlingTest.class edu/cmu/tetrad/search/mb/Mmhc.class edu/cmu/tetrad/graph/GraphUtils$TwoCycleErrors.class edu/pitt/csb/mgm/MixedUtils.class edu/cmu/tetrad/algcomparison/simulation/TimeSeriesSemSimulation$1.class edu/cmu/tetrad/search/ConditionalGaussianOtherLikelihood$Ret.class edu/cmu/tetrad/search/Lofs2$2.class edu/cmu/tetrad/util/TetradLoggerListener.class edu/cmu/tetrad/search/CcdMax.class edu/cmu/tetrad/algcomparison/simulation/BooleanGlassSimulation.class edu/cmu/tetrad/calculator/expression/ExpressionManager$ExponentialExpressionDescriptor.class edu/cmu/tetrad/search/Lofs2$Score.class edu/cmu/tetrad/calculator/expression/ExpressionManager$UniformExpressionDescriptor.class edu/cmu/tetrad/calculator/expression/ExpressionManager$DiscErrorExpressionDescriptor.class edu/cmu/tetrad/gene/tetrad/gene/history/TestPolynomial.class edu/cmu/tetrad/algcomparison/graph/RandomGraph.class edu/cmu/tetrad/data/ColtDataSet.class edu/cmu/tetrad/search/ConditionalGaussianLikelihood.class edu/cmu/tetrad/calculator/expression/ExpressionManager$SignumExpressionDescriptor.class edu/cmu/tetrad/calculator/expression/ExpressionManager$LogisticExpressionDescriptor$1.class edu/cmu/tetrad/data/ICovarianceMatrix.class edu/cmu/tetrad/util/MatrixUtils.class edu/cmu/tetrad/calculator/expression/ExpressionManager$CoshExpressionDescriptor.class edu/cmu/tetrad/calculator/expression/ExpressionManager$SinExpressionDescriptor$1.class edu/cmu/tetrad/bayes/CellTableProbs.class edu/cmu/tetrad/algcomparison/utils/HasKnowledge.class edu/cmu/tetrad/search/FgesOld$Arrow.class edu/cmu/tetrad/algcomparison/simulation/GeneralSemSimulation.class edu/cmu/tetrad/calculator/expression/ExpressionDescriptor$Position.class edu/cmu/tetrad/data/DataUtils$2.class edu/cmu/tetrad/search/Bff.class edu/cmu/tetrad/cluster/KMeans.class edu/cmu/tetrad/bayes/BdeMetricCache.class edu/cmu/tetrad/regression/RegressionResult.class edu/cmu/tetrad/bayes/FactoredBayesStructuralEM.class edu/cmu/tetrad/graph/NodeEqualityMode.class edu/cmu/tetrad/algcomparison/utils/ParameterValues.class edu/cmu/tetrad/calculator/expression/ExpressionManager$ExpExpressionDescriptor.class edu/cmu/tetrad/search/Washdown.class edu/cmu/tetrad/graph/NodePair.class edu/cmu/tetrad/search/SepsetsMinScore.class edu/cmu/tetrad/search/IndTestDirichletScore.class edu/cmu/tetrad/sem/SemOptimizerEm.class edu/cmu/tetrad/search/mb/Mmmb.class edu/cmu/tetrad/search/GraphWithParameters.class edu/cmu/tetrad/search/Cfci$TripleType.class edu/cmu/tetrad/graph/GraphConstraint.class edu/cmu/tetrad/search/DMSearch$LatentStructure.class edu/cmu/tetrad/util/StatUtils$1.class edu/cmu/tetrad/bayes/Proposition.class edu/cmu/tetrad/util/dist/Uniform.class edu/cmu/tetrad/graph/TimeLagGraph$NodeId.class edu/cmu/tetrad/gene/tetradapp/model/BooleanGlassGeneIm.class edu/cmu/tetrad/search/PossibleDsepCfci.class edu/cmu/tetrad/calculator/expression/ExpressionManager$GumbelExpressionDescriptor.class edu/cmu/tetrad/data/CellTable.class edu/cmu/tetrad/algcomparison/utils/TakesInitialGraph.class edu/cmu/tetrad/calculator/expression/ExpressionManager$ChiSquareExpressionDescriptor.class edu/cmu/tetrad/search/FgesMb$2InitializeFromExistingGraphTask.class edu/cmu/tetrad/calculator/parser/Token.class edu/cmu/tetrad/calculator/expression/ExpressionManager$ChiSquareExpressionDescriptor$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$NewExpressionDescriptor2.class edu/cmu/tetrad/calculator/expression/ExpressionManager$PoissonExpressionDescriptor.class edu/cmu/tetrad/search/FgesD$1.class edu/cmu/tetrad/search/Lingam$Entry.class edu/cmu/tetrad/search/mb/HitonMb.class edu/cmu/tetrad/search/MagToPag.class edu/cmu/tetrad/search/FindTwoFactorClusters$Algorithm.class edu/pitt/csb/mgm/MGM.class edu/cmu/tetrad/calculator/expression/ExpressionManager$NakagamiExpressionDescriptor$1.class edu/cmu/tetrad/util/TetradLoggerConfig$Event.class edu/cmu/tetrad/bayes/BayesIm.class edu/cmu/tetrad/calculator/expression/ExpressionManager$NExpressionDescriptor.class edu/cmu/tetrad/search/FgesMb$1AdjTask.class edu/cmu/tetrad/search/DiscreteTetradTest.class edu/cmu/tetrad/search/FgesMb$1BackwardTask.class edu/cmu/tetrad/search/IndTestMultinomialLogisticRegression.class edu/cmu/tetrad/data/KnowledgeEdge.class edu/cmu/tetrad/graph/EdgeListGraph.class edu/cmu/tetrad/search/Vcpc$CpcTripleType.class edu/cmu/tetrad/util/dist/Discrete.class edu/cmu/tetrad/calculator/expression/ExpressionManager$GreaterThanExpressionDescriptor.class edu/cmu/tetrad/calculator/expression/ExpressionManager$AtanExpressionDescriptor$1.class edu/cmu/tetrad/data/TriangularMatrix.class edu/cmu/tetrad/search/Cfci.class edu/cmu/tetrad/calculator/expression/ExpressionManager$BetaExpressionDescriptor$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$NExpressionDescriptor$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$DiscreteExpressionDescriptor$1.class edu/cmu/tetrad/sem/ParameterPair.class edu/cmu/tetrad/search/FgesMb$1MbAboutNodeTask.class edu/cmu/tetrad/data/DataBox.class edu/cmu/tetrad/search/TsFges2$1AdjTask.class edu/cmu/tetrad/search/TsFges2.class edu/cmu/tetrad/util/TetradVector.class edu/cmu/tetrad/data/IndependenceFacts.class edu/cmu/tetrad/search/IndTestMulti.class edu/cmu/tetrad/bayes/IntAveDataSetProbs.class edu/cmu/tetrad/search/DagToPattern.class edu/cmu/tetrad/calculator/expression/ExpressionManager$ParetoExpressionDescriptor$1.class edu/cmu/tetrad/sem/SemPm.class edu/cmu/tetrad/search/FciMax$1Task.class edu/cmu/tetrad/search/DMSearch$9.class edu/cmu/tetrad/bayes/EmBayesProperties$Estimator.class edu/cmu/tetrad/search/FasStableConcurrent$1DepthTask.class edu/cmu/tetrad/search/Mbfs.class edu/cmu/tetrad/calculator/expression/ExpressionManager$SinExpressionDescriptor.class edu/cmu/tetrad/data/BootstrapSampler.class edu/cmu/tetrad/bayes/BayesProperties$Ret.class edu/cmu/tetrad/gene/tetrad/gene/graph/ManualLagGraph.class edu/cmu/tetrad/util/NamingProtocol.class edu/cmu/tetrad/search/PcLocal.class edu/cmu/tetrad/data/Discretizer$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$SplitExpressionDescriptor.class edu/cmu/tetrad/search/LocalDiscreteScore.class edu/cmu/tetrad/search/BinaryFunction.class edu/cmu/tetrad/search/GwpResult.class edu/cmu/tetrad/data/Variable.class edu/cmu/tetrad/calculator/expression/ExpressionManager$SignumExpressionDescriptor$1.class edu/cmu/tetrad/search/SampleVcpcFast.class edu/cmu/tetrad/search/SemBicScore.class edu/cmu/tetrad/data/CorrelationMatrix.class edu/cmu/tetrad/calculator/expression/ExpressionManager$LessThanExpressionDescriptor$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$EqualsExpressionDescriptor$1.class edu/cmu/tetrad/search/FgesMb$MbTask.class edu/cmu/tetrad/search/SepsetMap.class edu/cmu/tetrad/algcomparison/simulation/Simulations.class edu/cmu/tetrad/calculator/expression/ExpressionManager$AcosExpressionDescriptor$1.class edu/cmu/tetrad/data/DelimiterType.class edu/cmu/tetrad/search/Dci.class edu/cmu/tetrad/gene/tetrad/gene/history/SimpleRandomizer.class edu/cmu/tetrad/graph/GraphGeneratorRandomNumEdges.class edu/cmu/tetrad/data/ShortTriangularMatrix.class edu/cmu/tetrad/calculator/expression/ExpressionManager$UExpressionDescriptor.class edu/cmu/tetrad/gene/tetrad/gene/history/BasicLagGraph.class edu/cmu/tetrad/bayes/DirichletDataSetProbs.class edu/cmu/tetrad/search/DMSearch$4.class edu/cmu/tetrad/search/MimbuildTrek$Function2.class edu/cmu/tetrad/search/IndTestConditionalCorrelation.class edu/cmu/tetrad/search/EstimateRank.class edu/cmu/tetrad/search/FgesOrienter.class edu/cmu/tetrad/search/Lingam$StlPruneResult.class edu/cmu/tetrad/search/FgesOld$1BackwardTask.class edu/cmu/tetrad/calculator/expression/ExpressionManager$GammaExpressionDescriptor.class edu/cmu/tetrad/calculator/expression/ExpressionManager$FExpressionDescriptor.class edu/cmu/tetrad/data/ContinuousDiscretizationSpec.class edu/cmu/tetrad/data/SplitCasesSpec.class edu/cmu/tetrad/data/BigDataSetUtility$DiscreteDataAnalysis.class edu/cmu/tetrad/calculator/expression/ExpressionManager$CoshExpressionDescriptor$1.class edu/cmu/tetrad/search/mb/Iamb.class edu/cmu/tetrad/search/FasFdr.class edu/cmu/tetrad/search/IndTestSepset.class edu/cmu/tetrad/data/Clusters.class edu/cmu/tetrad/calculator/expression/ExpressionManager$MinExpressionDescriptor$1.class edu/cmu/tetrad/graph/EdgeListGraphSingleConnections.class edu/cmu/tetrad/calculator/expression/ExpressionManager$TanExpressionDescriptor$1.class edu/cmu/tetrad/search/IonJoeModifications$IonIndependenceFacts.class edu/cmu/tetrad/gene/tetrad/gene/history/RandomDistribution.class edu/cmu/tetrad/calculator/expression/ExpressionManager$AdditionExpressionDescriptor.class edu/cmu/tetrad/calculator/expression/AbstractExpression.class edu/cmu/tetrad/calculator/expression/ExpressionManager$SplitExpressionDescriptor$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$XOrExpressionDescriptor.class edu/cmu/tetrad/search/IonJoeModifications.class edu/cmu/tetrad/calculator/expression/ExpressionManager$AtanExpressionDescriptor.class edu/cmu/tetrad/search/TsFges2$Mode.class edu/cmu/tetrad/graph/FruchtermanReingoldLayout.class edu/cmu/tetrad/graph/TimeLagGraph.class edu/cmu/tetrad/calculator/expression/ExpressionManager$WeibullExpressionDescriptor$1.class edu/cmu/tetrad/search/SepsetMapDci.class edu/cmu/tetrad/data/CovarianceMatrixOnTheFly$1VarianceTask.class edu/cmu/tetrad/gene/tetrad/gene/history/TestIndexedLagGraph.class edu/cmu/tetrad/search/Lofs2$Rule.class edu/cmu/tetrad/search/FgesD$1AdjTask.class edu/cmu/tetrad/gene/tetrad/gene/history/IndexedParent.class edu/cmu/tetrad/search/DMSearch$2.class edu/cmu/tetrad/calculator/expression/ExpressionManager$SubtractionExpressionDescriptor.class edu/cmu/tetrad/search/FasStableConcurrentFdr$1DepthTask.class edu/cmu/tetrad/data/IDataReader.class edu/cmu/tetrad/calculator/expression/ExpressionManager.class edu/cmu/tetrad/search/Ion$IonIndependenceFacts.class edu/cmu/tetrad/algcomparison/simulation/LinearFisherModel.class edu/cmu/tetrad/graph/GraphConverter.class edu/cmu/tetrad/search/Fges$1AdjTask.class edu/cmu/tetrad/search/MbSearch.class edu/cmu/tetrad/search/SepsetsSet.class edu/cmu/tetrad/search/GwpResult$CoefficientEvaluationResult.class edu/cmu/tetrad/search/PatternToDag.class edu/cmu/tetrad/calculator/expression/ExpressionManager$AbsoluteValueExpressionDescriptor.class edu/cmu/tetrad/calculator/expression/ExpressionSignature.class edu/cmu/tetrad/algcomparison/statistic/utils/ArrowConfusion.class edu/cmu/tetrad/calculator/expression/ExpressionManager$TSumExpressionDescriptor$1.class edu/cmu/tetrad/algcomparison/simulation/StandardizedSemSimulation.class edu/cmu/tetrad/search/SearchGraphUtils$CpcTripleType.class edu/cmu/tetrad/search/FasDeterministic.class edu/cmu/tetrad/bayes/RowSummingExactUpdater.class edu/cmu/tetrad/data/Simulator.class edu/cmu/tetrad/search/Fges$1InitializeFromEmptyGraphTask.class edu/cmu/tetrad/util/Parameters.class edu/cmu/tetrad/search/ChiSquareTest$Result.class edu/cmu/tetrad/search/Lofs2$Pair.class edu/cmu/tetrad/calculator/expression/ExpressionManager$NakagamiExpressionDescriptor.class edu/cmu/tetrad/graph/LayeredDrawing.class edu/cmu/tetrad/search/DagIterator$DecoratedGraph.class edu/cmu/tetrad/calculator/expression/ExpressionManager$NormalExpressionDescriptor.class edu/cmu/tetrad/graph/DirectedUndirectedOnly.class edu/cmu/tetrad/graph/OrderedPair.class edu/cmu/tetrad/calculator/expression/EvaluationExpression.class edu/cmu/tetrad/search/FciOrientT.class edu/cmu/tetrad/calculator/expression/ExpressionManager$MaxExpressionDescriptor$1.class edu/cmu/tetrad/util/dist/Exponential.class edu/cmu/tetrad/util/PointXy.class edu/cmu/tetrad/gene/tetrad/gene/history/GraphInitializer.class edu/cmu/tetrad/search/SearchLogUtils.class edu/cmu/tetrad/sem/DagScorer.class edu/cmu/tetrad/data/Histogram.class edu/cmu/tetrad/search/CpcLocal.class edu/cmu/tetrad/search/ScoredGraph.class edu/cmu/tetrad/search/DMSearch$6.class edu/cmu/tetrad/search/mb/HitonVariant$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$NewExpressionDescriptor$1.class edu/cmu/tetrad/search/FgesOrienter$1BackwardTask.class edu/cmu/tetrad/data/BigDataSetUtility$DiscreteVar.class edu/cmu/tetrad/search/GraphGroupSearch.class edu/cmu/tetrad/gene/tetradapp/model/BooleanGlassGenePm.class edu/cmu/tetrad/calculator/expression/ExpressionManager$TanhExpressionDescriptor.class edu/cmu/tetrad/search/kernel/KernelUtils.class edu/cmu/tetrad/calculator/expression/ExpressionManager$DivisionExpressionDescriptor.class edu/cmu/tetrad/search/VcpcFast$CpcTripleType.class edu/pitt/csb/mgm/IndTestMultinomialAJ.class edu/cmu/tetrad/search/AdLeafTree.class edu/cmu/tetrad/cluster/ClusteringAlgorithm.class edu/cmu/tetrad/search/PermutationMatrixPair.class edu/cmu/tetrad/gene/tetrad/gene/graph/StoredLagGraphParams.class edu/cmu/tetrad/search/PurifyTetradBased.class edu/cmu/tetrad/search/DiscreteClassifier.class edu/cmu/tetrad/calculator/expression/ExpressionManager$NaturalLogExpressionDescriptor.class edu/cmu/tetrad/search/TsDagToPag.class edu/cmu/tetrad/search/FgesD$1InitializeFromExistingGraphTask.class edu/cmu/tetrad/search/TetradTest.class edu/cmu/tetrad/bayes/StoredCellProbs.class edu/cmu/tetrad/calculator/expression/ExpressionManager$TSumExpressionDescriptor2$1.class edu/cmu/tetrad/search/FgesMb$Mode.class edu/cmu/tetrad/search/MimbuildTrek$Function1.class edu/cmu/tetrad/search/DMSearch$5.class edu/cmu/tetrad/gene/tetrad/gene/history/TestBooleanFunction.class edu/cmu/tetrad/data/DataSet.class edu/cmu/tetrad/gene/tetrad/gene/history/BooleanFunction.class edu/cmu/tetrad/search/GwpResult$PartialEvaluationResult.class edu/cmu/tetrad/graph/Edges$1.class edu/cmu/tetrad/util/TetradLogger$LogDisplayOutputStream.class edu/cmu/tetrad/calculator/expression/ExpressionManager$SquareRootExpressionDescriptor$1.class edu/cmu/tetrad/search/MeekRulesPattern.class edu/cmu/tetrad/search/SampleVcpc$1.class edu/cmu/tetrad/util/TetradLogger$EmptyConfig.class edu/cmu/tetrad/calculator/expression/ExpressionManager$MaxExpressionDescriptor.class edu/cmu/tetrad/calculator/expression/ExpressionManager$TProductExpressionDescriptor2$1.class edu/cmu/tetrad/util/CombinationGenerator.class edu/cmu/tetrad/bayes/StoredCellProbsObs.class edu/cmu/tetrad/algcomparison/simulation/SemThenDiscretize.class edu/cmu/tetrad/data/VerticalDoubleDataBox.class edu/cmu/tetrad/search/TimeSeriesUtils$VarResult.class edu/cmu/tetrad/sem/StandardizedSemIm.class edu/cmu/tetrad/graph/TripleClassifier.class edu/cmu/tetrad/util/dist/SingleValue.class edu/cmu/tetrad/util/dist/GaussianPower.class edu/cmu/tetrad/calculator/expression/ExpressionManager$LessThanOrEqualExpressionDescriptor.class edu/cmu/tetrad/search/PurifySextadBased.class edu/cmu/tetrad/search/DMSearch$7.class edu/cmu/tetrad/graph/Edge.class edu/cmu/tetrad/search/Rfci.class edu/cmu/tetrad/search/LingamPattern.class edu/cmu/tetrad/algcomparison/simulation/LinearSineSimulation.class edu/cmu/tetrad/regression/LogisticRegression2$FittingFunction.class edu/cmu/tetrad/util/LingUtils.class edu/cmu/tetrad/data/DataFilter.class edu/cmu/tetrad/bayes/MlBayesIm.class edu/cmu/tetrad/graph/MisclassificationUtils.class edu/cmu/tetrad/calculator/expression/ExpressionManager$WeibullExpressionDescriptor.class edu/cmu/tetrad/search/FgesMb$1InitializeFromExistingGraphTask.class edu/cmu/tetrad/algcomparison/graph/Cyclic.class edu/cmu/tetrad/sem/SemOptimizerRegression.class edu/cmu/tetrad/search/Jcpc.class edu/cmu/tetrad/calculator/expression/ExpressionManager$TProductExpressionDescriptor2.class edu/cmu/tetrad/search/ImpliedOrientation.class edu/cmu/tetrad/algcomparison/simulation/ConditionalGaussianSimulation$Combination.class edu/cmu/tetrad/bayes/MlBayesImObs.class edu/cmu/tetrad/search/DMSearch.class edu/cmu/tetrad/data/VariableSource.class edu/cmu/tetrad/bayes/DirichletBayesIm.class edu/cmu/tetrad/util/ArrUtils.class edu/cmu/tetrad/search/ProbabilisticMAPIndependence.class edu/cmu/tetrad/search/CpcOrienter.class edu/cmu/tetrad/search/GFciMax$1Task.class edu/cmu/tetrad/calculator/expression/ExpressionManager$TriangularExpressionDescriptor$1.class edu/cmu/tetrad/search/LegalPairs.class edu/cmu/tetrad/algcomparison/statistic/utils/TailConfusion.class edu/cmu/tetrad/calculator/expression/ExpressionManager$XOrExpressionDescriptor$1.class edu/cmu/tetrad/search/mb/InterIamb.class edu/cmu/tetrad/search/SemLikelihood2.class edu/cmu/tetrad/search/ConditionalGaussianOtherLikelihood$1.class edu/cmu/tetrad/search/Dci$FindMinimalSpanningTrek.class edu/cmu/tetrad/search/FgesOld$1InitializeFromExistingGraphTask.class edu/cmu/tetrad/search/MimbuildTrek$Function4.class edu/cmu/tetrad/sem/StandardizedSemIm$ParameterRange.class edu/cmu/tetrad/search/Glasso$Rho.class edu/cmu/tetrad/search/IndTestGSquare.class edu/cmu/tetrad/graph/NodeEqualityMode$Type.class edu/cmu/tetrad/bayes/DataSetProbs.class edu/cmu/tetrad/calculator/expression/ExpressionManager$TSumExpressionDescriptor2.class edu/cmu/tetrad/search/DagToPag2.class edu/cmu/tetrad/data/IntDataBox.class edu/cmu/tetrad/sem/SemOptimizerPowell.class edu/cmu/tetrad/search/ConditionalGaussianLikelihood$1.class edu/cmu/tetrad/search/MeekRulesRestricted.class edu/cmu/tetrad/search/SepsetsMaxPValuePossDsep.class edu/cmu/tetrad/search/Fges$1BackwardTask.class edu/cmu/tetrad/util/CombinationIterator.class edu/cmu/tetrad/search/BayesUpdaterClassifier.class edu/cmu/tetrad/search/Mbfs$TripleType.class edu/cmu/tetrad/graph/Edge$Property.class edu/cmu/tetrad/calculator/expression/ExpressionManager$IfExpressionDescriptor.class edu/cmu/tetrad/algcomparison/simulation/GeneralSemSimulationSpecial1.class edu/cmu/tetrad/sem/LargeScaleSimulation$1.class edu/cmu/tetrad/search/DMSearch$8.class edu/cmu/tetrad/search/FgesOrienter$1EffectTask.class edu/cmu/tetrad/bayes/BayesImProbs.class edu/cmu/tetrad/algcomparison/statistic/utils/SimulationPath.class edu/cmu/tetrad/search/FasLofs.class edu/cmu/tetrad/data/DataUtils.class edu/cmu/tetrad/search/ContinuousTetradTest$SimpleFactorEstimator.class edu/cmu/tetrad/search/Cpc.class edu/cmu/tetrad/calculator/expression/ExpressionManager$PowExpressionDescriptor2$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$LaplaceExpressionDescriptor$1.class edu/cmu/tetrad/search/mb/HitonVariant.class edu/cmu/tetrad/util/ChoiceGenerator.class edu/cmu/tetrad/data/NumberObjectDataSet.class edu/cmu/tetrad/search/Ion$PowerSet$PowerSetIterator.class edu/cmu/tetrad/search/TsFciOrient.class edu/cmu/tetrad/calculator/expression/ExpressionManager$GammaExpressionDescriptor$1.class edu/cmu/tetrad/graph/EdgeListGraph$Pair.class edu/cmu/tetrad/search/DirichletScore.class edu/cmu/tetrad/search/Glasso$1.class edu/pitt/csb/mgm/ConvexProximal.class edu/cmu/tetrad/data/Discretizer.class edu/cmu/tetrad/search/PossibleGraphicalChangeFinder.class edu/cmu/tetrad/calculator/parser/ExpressionLexer.class edu/cmu/tetrad/search/FindOneFactorClusters.class edu/cmu/tetrad/algcomparison/simulation/LoadContinuousDataAndSingleGraph.class edu/cmu/tetrad/search/ContinuousTetradTest$OneFactorEstimator.class edu/cmu/tetrad/data/DataReader$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$TProductExpressionDescriptor$1.class edu/cmu/tetrad/search/FindOneFactorClusters$1.class edu/cmu/tetrad/data/DataGraphUtils.class edu/cmu/tetrad/search/VcpcFast.class edu/cmu/tetrad/calculator/expression/ExpressionManager$AcosExpressionDescriptor.class edu/cmu/tetrad/calculator/expression/ExpressionManager$GumbelExpressionDescriptor$1.class edu/cmu/tetrad/algcomparison/simulation/BooleanGlassSimulation$1.class edu/cmu/tetrad/calculator/expression/ExpressionInitializationException.class edu/cmu/tetrad/calculator/expression/ExpressionManager$LaplaceExpressionDescriptor.class edu/cmu/tetrad/search/MVPLikelihood.class edu/cmu/tetrad/search/Fges$2InitializeFromExistingGraphTask.class edu/cmu/tetrad/bayes/BdeMetric.class edu/cmu/tetrad/search/IndTestRegressionAD.class edu/cmu/tetrad/search/IndependenceTest.class edu/cmu/tetrad/search/MimAdjacencySearch.class edu/cmu/tetrad/search/DMSearch$3.class edu/cmu/tetrad/search/TsFges2$1InitializeFromEmptyGraphTask.class edu/cmu/tetrad/data/CovarianceMatrixOnTheFly$IntPair.class edu/cmu/tetrad/search/IImages.class edu/cmu/tetrad/search/ChiSquareTest.class edu/cmu/tetrad/calculator/expression/ExpressionManager$GreaterThanOrEqualExpressionDescriptor$1.class edu/cmu/tetrad/search/mb/MmmbGraphRestricted.class edu/cmu/tetrad/search/IntSextad.class edu/cmu/tetrad/util/NumberFormatUtil.class edu/cmu/tetrad/gene/tetrad/gene/history/Polynomial.class edu/cmu/tetrad/search/Mimbuild2$Function2.class edu/cmu/tetrad/util/ParamDescriptions.class edu/cmu/tetrad/search/IndTestCorrelationT.class edu/cmu/tetrad/calculator/expression/ExpressionManager$UExpressionDescriptor$1.class edu/cmu/tetrad/bayes/ExtraCategoryInterpolator.class edu/cmu/tetrad/search/FindOneFactorClusters$Algorithm.class edu/cmu/tetrad/search/SemBicScoreImages2.class edu/cmu/tetrad/graph/GraphUtils$2EdgeNode.class edu/cmu/tetrad/util/TetradMatrix.class edu/cmu/tetrad/calculator/expression/ExpressionManager$SinhExpressionDescriptor.class edu/pitt/dbmi/algo/bayesian/constraint/inference/BayesianConstraintInferenceTest.class edu/cmu/tetrad/calculator/expression/ExpressionManager$CeilExpressionDescriptor$1.class edu/cmu/tetrad/algcomparison/simulation/BayesNetSimulation.class edu/cmu/tetrad/calculator/expression/Equation.class edu/cmu/tetrad/gene/tetrad/gene/history/TestIndexedConnectivity.class edu/cmu/tetrad/data/KnowledgeBoxInput.class edu/cmu/tetrad/graph/Dag.class edu/cmu/tetrad/sem/TemplateExpander.class edu/cmu/tetrad/util/Integrator.class edu/cmu/tetrad/search/GFciMax.class edu/cmu/tetrad/search/Ion.class edu/cmu/tetrad/search/GraphScorer.class edu/cmu/tetrad/sem/ConnectionFunction.class edu/cmu/tetrad/search/GSquareTest.class edu/cmu/tetrad/search/InverseCorrelation.class edu/cmu/tetrad/bayes/BdeMetricCache$NodeParentsPair.class edu/cmu/tetrad/search/LingamPattern2.class edu/cmu/tetrad/calculator/expression/ExpressionManager$FExpressionDescriptor$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$CosExpressionDescriptor.class edu/cmu/tetrad/bayes/ModeInterpolator.class edu/cmu/tetrad/regression/Regression.class edu/cmu/tetrad/search/IndTestFisherZ.class edu/cmu/tetrad/data/Knowledge2$MyNode.class edu/cmu/tetrad/bayes/EmBayesProperties.class edu/cmu/tetrad/calculator/expression/ExpressionManager$TSumExpressionDescriptor.class edu/cmu/tetrad/search/Mimbuild2.class edu/cmu/tetrad/util/TextTable.class edu/cmu/tetrad/util/dist/MixtureOfGaussians.class edu/cmu/tetrad/graph/SemGraph.class edu/cmu/tetrad/search/kernel/KernelGaussian.class edu/cmu/tetrad/search/Score.class edu/cmu/tetrad/sem/SemStdErrorEstimator$FittingFunction.class edu/cmu/tetrad/search/Dci$PowerSet$PowerSetIterator.class edu/cmu/tetrad/search/FciMax$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$RandomExpressionDescriptor.class edu/cmu/tetrad/search/SemLikelihood2$1.class edu/cmu/tetrad/data/MeanInterpolator.class edu/cmu/tetrad/search/Glasso.class edu/cmu/tetrad/graph/GraphUtils$1EdgeNode.class edu/cmu/tetrad/graph/GraphUtils$3.class edu/cmu/tetrad/search/SemBicScoreImages.class edu/cmu/tetrad/calculator/Transformation.class edu/cmu/tetrad/search/GraphScore.class edu/cmu/tetrad/search/DMSearch$10.class edu/cmu/tetrad/search/IndTestType.class edu/cmu/tetrad/data/DataWriter.class edu/cmu/tetrad/sem/SemIm.class edu/cmu/tetrad/search/PagUtils.class edu/cmu/tetrad/util/PermutationGenerator.class edu/cmu/tetrad/graph/GraphUtils$1CountTask.class edu/cmu/tetrad/sem/GeneralizedSemIm$9.class edu/cmu/tetrad/calculator/expression/ExpressionManager$LessThanExpressionDescriptor.class edu/cmu/tetrad/data/FloatDataBox.class edu/cmu/tetrad/search/Lofs.class edu/cmu/tetrad/search/Cefs$TripleType.class edu/cmu/tetrad/search/IndTestChiSquare.class edu/cmu/tetrad/search/BffGes$GraphWithPValue.class edu/cmu/tetrad/search/ContinuousTetradTest$TwoFactorsEstimator.class edu/cmu/tetrad/data/IKnowledge.class edu/cmu/tetrad/search/Fges$Arrow.class edu/cmu/tetrad/calculator/expression/ExpressionDescriptor.class edu/cmu/tetrad/search/PcMaxLocal.class edu/cmu/tetrad/search/IonJoeModifications$PowerSet.class edu/cmu/tetrad/search/Pcd.class edu/cmu/tetrad/search/BdeuScoreImages.class edu/cmu/tetrad/sem/GeneralizedSemIm$8.class edu/cmu/tetrad/algcomparison/graph/RandomTwoFactorMim.class edu/cmu/tetrad/search/FastIca.class edu/cmu/tetrad/util/dist/Split.class edu/cmu/tetrad/util/dist/Normal.class edu/cmu/tetrad/graph/IndependenceFact.class edu/cmu/tetrad/gene/tetrad/gene/history/PreviousStepOnly.class edu/cmu/tetrad/search/mb/HitonMb$1.class edu/cmu/tetrad/calculator/expression/ExpressionUtils.class edu/cmu/tetrad/util/PartialCorrelationPdf.class edu/cmu/tetrad/calculator/expression/ConstantExpression.class edu/cmu/tetrad/search/BDeuScore.class edu/cmu/tetrad/bayes/IntMaxDataSetProbs.class edu/cmu/tetrad/bayes/BayesPm.class edu/cmu/tetrad/data/DataModelList.class edu/cmu/tetrad/search/Glasso$Result.class edu/cmu/tetrad/graph/GraphUtils$GraphComparison.class edu/cmu/tetrad/util/DepthChoiceGenerator.class edu/cmu/tetrad/search/mb/Mmmb$MaxMinAssocResult.class edu/cmu/tetrad/sem/ParamComparison.class edu/cmu/tetrad/sem/SemStdErrorEstimator$SemFittingFunction.class edu/cmu/tetrad/calculator/expression/ExpressionManager$CauchyExpressionDescriptor.class edu/cmu/tetrad/graph/GraphUtils$Counts.class edu/cmu/tetrad/search/Fges$Mode.class edu/cmu/tetrad/data/DataType.class edu/cmu/tetrad/calculator/expression/ExpressionManager$DivisionExpressionDescriptor$1.class edu/cmu/tetrad/search/ContinuousTetradTest.class edu/cmu/tetrad/search/Fang.class edu/cmu/tetrad/search/GwpResult$PatternEvaluationResult.class edu/cmu/tetrad/search/IFas.class edu/cmu/tetrad/search/LingamPattern2$Score.class edu/cmu/tetrad/calculator/expression/ExpressionManager$CosExpressionDescriptor$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$TriangularExpressionDescriptor.class edu/pitt/dbmi/algo/bayesian/constraint/inference/BayesianConstraintInference.class edu/cmu/tetrad/calculator/expression/ExpressionManager$MixtureDescriptor.class edu/cmu/tetrad/calculator/expression/ExpressionManager$FloorExpressionDescriptor$1.class edu/cmu/tetrad/search/MbClassify.class edu/cmu/tetrad/search/FgesD$Mode.class edu/cmu/tetrad/bayes/BayesXmlParser.class edu/cmu/tetrad/search/TimeSeriesLagSearch.class edu/cmu/tetrad/data/DataReader$DataSetDescription.class edu/cmu/tetrad/search/Lofs2$3.class edu/cmu/tetrad/sem/SemEstimator.class edu/cmu/tetrad/sem/SemPm$1.class edu/cmu/tetrad/search/DagInPatternIterator$DecoratedGraph.class edu/cmu/tetrad/search/OrientCollidersMaxP$1Task.class edu/cmu/tetrad/calculator/expression/ExpressionManager$Log10ExpressionDescriptor$1.class edu/cmu/tetrad/search/BDeScore.class edu/cmu/tetrad/calculator/expression/ExpressionManager$PowExpressionDescriptor.class edu/cmu/tetrad/search/VcpcAlt$1.class edu/cmu/tetrad/data/CovarianceMatrixOnTheFly.class edu/cmu/tetrad/search/FgesMb.class edu/cmu/tetrad/bayes/ManipulatingBayesUpdater.class edu/cmu/tetrad/search/IndTestFisherZD.class edu/cmu/tetrad/util/MatrixUtils$1.class edu/cmu/tetrad/data/ColtDataBox.class edu/cmu/tetrad/search/DeltaSextadTest$Sigma.class edu/cmu/tetrad/bayes/CptInvariantMarginalCalculator.class edu/cmu/tetrad/gene/tetrad/gene/graph/ManualLagGraphParams.class edu/cmu/tetrad/calculator/expression/ExpressionManager$GreaterThanExpressionDescriptor$1.class edu/cmu/tetrad/search/FgesD.class edu/cmu/tetrad/util/dist/Gamma.class edu/cmu/tetrad/search/Fges.class edu/cmu/tetrad/sem/GeneralizedSemPm.class edu/cmu/tetrad/search/Lingam$EstimateResult.class edu/cmu/tetrad/util/dist/TruncatedNormal.class edu/cmu/tetrad/gene/tetrad/gene/history/IndexedLagGraph.class edu/cmu/tetrad/bayes/ModelGenerator.class edu/cmu/tetrad/calculator/expression/ExpressionManager$MultiplicationExpressionDescriptor$1.class edu/cmu/tetrad/search/Lofs$Score.class edu/cmu/tetrad/search/ResolveSepsets$Method.class edu/cmu/tetrad/search/TsFges2$Arrow.class edu/cmu/tetrad/calculator/expression/ExpressionManager$ExpExpressionDescriptor$1.class edu/cmu/tetrad/graph/GraphUtils.class edu/cmu/tetrad/search/ConditionalGaussianLikelihood$Ret.class edu/cmu/tetrad/search/IndTestFisherZPercentIndependent.class edu/cmu/tetrad/calculator/expression/ExpressionManager$OrExpressionDescriptor$1.class edu/cmu/tetrad/search/IndTestTrekSep.class edu/cmu/tetrad/calculator/expression/ExpressionManager$RoundExpressionDescriptor$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$RandomExpressionDescriptor$1.class edu/cmu/tetrad/search/GSquareTest$Result.class edu/cmu/tetrad/bayes/DirichletEstimator.class edu/cmu/tetrad/gene/tetrad/gene/graph/DisplayNameHandler.class edu/cmu/tetrad/search/ConditionalGaussianOtherLikelihood.class edu/cmu/tetrad/search/DirectedGraphIterator.class edu/cmu/tetrad/util/dist/ChiSquare.class edu/cmu/tetrad/calculator/expression/ExpressionManager$IfExpressionDescriptor$1.class edu/cmu/tetrad/bayes/Evidence.class edu/cmu/tetrad/algcomparison/utils/TakesData.class edu/cmu/tetrad/search/FasStableConcurrentFdr$1Depth0Task.class edu/cmu/tetrad/util/DefaultTetradLoggerConfig.class edu/cmu/tetrad/search/AdLeafTree$Vary.class edu/cmu/tetrad/util/TetradAlgebra.class edu/cmu/tetrad/search/LingamPattern$Score.class edu/cmu/tetrad/bayes/BayesUtils.class edu/cmu/tetrad/calculator/expression/ExpressionManager$OrExpressionDescriptor.class edu/cmu/tetrad/gene/tetrad/gene/simulation/TestMeasurementSimulator.class edu/cmu/tetrad/search/Vcpc$1.class edu/cmu/tetrad/search/FgesD$1InitializeFromEmptyGraphTask.class edu/cmu/tetrad/search/Jcpc$PathBlockingSet.class edu/cmu/tetrad/gene/tetrad/gene/history/PolynomialFunction.class edu/cmu/tetrad/calculator/expression/ExpressionManager$CeilExpressionDescriptor.class edu/pitt/csb/mgm/ProximalGradient.class edu/cmu/tetrad/graph/Edges.class edu/cmu/tetrad/search/IndTestDrton.class edu/cmu/tetrad/util/IndexedMatrix.class edu/cmu/tetrad/calculator/expression/ExpressionManager$LevyExpressionDescriptor.class edu/cmu/tetrad/search/TsFges2$NodeTaskEmptyGraph.class edu/cmu/tetrad/search/VcpcAlt.class edu/cmu/tetrad/graph/LagGraph.class edu/cmu/tetrad/calculator/expression/ExpressionManager$TruncNormalExpressionDescriptor$1.class edu/cmu/tetrad/util/TetradSerializable.class edu/cmu/tetrad/search/BffBeam.class edu/cmu/tetrad/algcomparison/simulation/LeeHastieSimulation.class edu/cmu/tetrad/calculator/expression/ExpressionManager$DiscErrorExpressionDescriptor$1.class edu/cmu/tetrad/sem/Scorer.class edu/cmu/tetrad/data/RandomSampler.class edu/cmu/tetrad/search/IndTestKciMatlab.class edu/cmu/tetrad/data/Discretizer$Discretization.class edu/cmu/tetrad/calculator/expression/ExpressionManager$RoundExpressionDescriptor.class edu/cmu/tetrad/calculator/expression/ExpressionManager$StudentTExpressionDescriptor$1.class edu/cmu/tetrad/search/MimUtils.class edu/cmu/tetrad/search/Fges$NodeTaskEmptyGraph.class edu/cmu/tetrad/search/SepsetsGreedy.class edu/cmu/tetrad/gene/tetrad/gene/history/TestSimpleRandomizer.class edu/cmu/tetrad/search/IndTestIndependenceFacts.class edu/cmu/tetrad/util/dist/Distribution.class edu/cmu/tetrad/search/Mimbuild2$Function3.class edu/cmu/tetrad/gene/tetrad/gene/graph/ActiveLagGraph.class edu/cmu/tetrad/graph/GraphNode.class edu/cmu/tetrad/search/IndTestDSep.class edu/cmu/tetrad/search/Purify.class edu/cmu/tetrad/calculator/expression/ExpressionManager$AbsoluteValueExpressionDescriptor$1.class edu/cmu/tetrad/sem/ISemIm.class edu/cmu/tetrad/search/IonHittingSet.class edu/cmu/tetrad/search/SemBicScoreImages3.class edu/cmu/tetrad/sem/SemIm$ScoreType.class edu/cmu/tetrad/regression/LogisticRegression$Result.class edu/cmu/tetrad/search/TsFci.class edu/cmu/tetrad/search/PurifyScoreBased.class edu/cmu/tetrad/search/ClusterUtils.class edu/cmu/tetrad/search/IonHittingSet$HsNode.class edu/cmu/tetrad/bayes/Identifiability.class edu/cmu/tetrad/sem/SemOptimizerPowell$FittingFunction.class edu/cmu/tetrad/search/WFges.class edu/cmu/tetrad/calculator/expression/ExpressionManager$MultiplicationExpressionDescriptor.class edu/cmu/tetrad/search/FactorAnalysis.class edu/cmu/tetrad/search/Pc.class edu/cmu/tetrad/calculator/expression/ExpressionManager$AsinExpressionDescriptor$1.class edu/cmu/tetrad/search/WGfci.class edu/cmu/tetrad/data/CovarianceMatrix$1VarianceTask.class edu/cmu/tetrad/calculator/expression/ExpressionManager$UniformExpressionDescriptor$1.class edu/cmu/tetrad/util/ParamDescription.class edu/cmu/tetrad/graph/Endpoint.class edu/cmu/tetrad/bayes/Manipulation.class edu/cmu/tetrad/graph/GraphUtils$2.class edu/cmu/tetrad/graph/AtMostOneEdgePerPair.class edu/cmu/tetrad/sem/GeneralizedSemIm$5.class edu/cmu/tetrad/search/FciDsepLegalPairsCfci.class edu/cmu/tetrad/search/Ion$PowerSet.class edu/cmu/tetrad/search/IonJoeModifications$PowerSet$PowerSetIterator.class edu/cmu/tetrad/search/IndTestFisherZBootstrap.class edu/cmu/tetrad/search/IndTestProbabilisticVerbose.class edu/cmu/tetrad/search/SepsetProducer.class edu/cmu/tetrad/search/ScoredIndTest.class edu/cmu/tetrad/search/Cefs.class edu/cmu/tetrad/search/Sextad.class edu/cmu/tetrad/gene/tetrad/gene/history/LaggedFactor.class edu/cmu/tetrad/cluster/metrics/SquaredErrorLoss.class edu/cmu/tetrad/search/ExperimentalSetup$PmType.class edu/cmu/tetrad/sem/GeneralizedSemIm$7.class edu/cmu/tetrad/bayes/EmBayesProperties$1.class edu/cmu/tetrad/util/ProbUtils.class edu/cmu/tetrad/util/TetradLogger.class edu/cmu/tetrad/sem/ParamType.class edu/cmu/tetrad/calculator/expression/ExpressionManager$SubtractionExpressionDescriptor$2.class edu/cmu/tetrad/search/DeltaTetradTest2.class edu/cmu/tetrad/search/DeltaTetradTest2$Sigma.class edu/cmu/tetrad/data/ShortDataBox.class edu/cmu/tetrad/search/SepsetsMaxScore.class edu/cmu/tetrad/search/PossibleDConnectingPath.class edu/cmu/tetrad/search/PcMax.class edu/cmu/tetrad/graph/InArrowImpliesNonancestor.class edu/cmu/tetrad/search/SepsetsMinPValue.class edu/cmu/tetrad/cluster/metrics/Dissimilarity.class edu/cmu/tetrad/data/DoubleDataBox.class edu/cmu/tetrad/regression/RegressionCovariance.class edu/cmu/tetrad/data/LogDataUtils.class edu/cmu/tetrad/search/AdLeafTree$2.class edu/cmu/tetrad/bayes/ApproximateUpdater.class edu/cmu/tetrad/search/IndTestRegression.class edu/cmu/tetrad/search/ExperimentalSetup$EsType.class edu/cmu/tetrad/algcomparison/simulation/LoadDataFromFileWithoutGraph.class edu/cmu/tetrad/search/ConditionalGaussianOtherScore.class edu/cmu/tetrad/search/FgesD$NodeTaskEmptyGraph.class edu/cmu/tetrad/algcomparison/simulation/ConditionalGaussianSimulation.class edu/cmu/tetrad/data/DataModel.class edu/cmu/tetrad/search/PopulationTetradTest.class edu/cmu/tetrad/search/MimbuildTrek.class edu/cmu/tetrad/util/TetradLoggerEvent.class edu/cmu/tetrad/search/GPc.class edu/cmu/tetrad/search/IPurify.class edu/cmu/tetrad/calculator/expression/ExpressionManager$LogNormalExpressionDescriptor$1.class edu/cmu/tetrad/data/CovarianceMatrix$1RestOfThemTask.class edu/cmu/tetrad/calculator/expression/ExpressionManager$AsinExpressionDescriptor.class edu/cmu/tetrad/search/CpcOrienter$TripleType.class edu/cmu/tetrad/search/IndTestHsic.class edu/cmu/tetrad/calculator/expression/ExpressionManager$MixtureDescriptor$1.class edu/cmu/tetrad/search/Fas.class edu/cmu/tetrad/calculator/expression/ExpressionManager$NewExpressionDescriptor.class edu/cmu/tetrad/gene/tetrad/gene/history/PolynomialTerm.class edu/cmu/tetrad/search/ShiftSearch.class edu/cmu/tetrad/util/CutoffFinder.class edu/cmu/tetrad/search/SampleVcpcFast$1.class edu/cmu/tetrad/util/Function.class edu/cmu/tetrad/bayes/OnTheFlyMarginalCalculator.class edu/cmu/tetrad/data/Knowledge.class edu/cmu/tetrad/data/DiscreteDiscretizationSpec.class edu/cmu/tetrad/search/ISemBicScore.class edu/cmu/tetrad/calculator/expression/ExpressionManager$PowExpressionDescriptor$1.class edu/cmu/tetrad/search/GraphSearch.class edu/cmu/tetrad/search/Ling$1.class edu/cmu/tetrad/search/IndTestFisherZFisherPValue.class edu/cmu/tetrad/search/IBDeuScore.class edu/cmu/tetrad/gene/tetrad/gene/history/Initializer.class edu/cmu/tetrad/calculator/expression/ExpressionManager$PowExpressionDescriptor2.class edu/cmu/tetrad/search/MVPScore.class edu/cmu/tetrad/util/dist/LogNormal.class edu/cmu/tetrad/util/DefaultTetradLoggerConfig$DefaultEvent.class edu/cmu/tetrad/sem/SemOptimizer.class edu/cmu/tetrad/calculator/expression/ExpressionManager$IndicatorExpressionDescriptor.class edu/cmu/tetrad/search/TsFges2$1InitializeFromExistingGraphTask.class edu/cmu/tetrad/util/MultiDimIntTable.class edu/cmu/tetrad/data/AbstractVariable.class edu/cmu/tetrad/search/Glasso$4.class edu/cmu/tetrad/search/DeltaSextadTest.class edu/pitt/csb/mgm/MGM$MGMParams.class edu/cmu/tetrad/search/BinaryFunctionUtils.class edu/cmu/tetrad/search/Reorienter.class edu/cmu/tetrad/algcomparison/utils/HasParameterValues.class edu/cmu/tetrad/sem/GeneralizedSemIm$3.class edu/cmu/tetrad/session/SessionModel.class edu/cmu/tetrad/calculator/expression/ExpressionManager$IndicatorExpressionDescriptor$1.class edu/cmu/tetrad/search/TsFges2$1BackwardTask.class edu/cmu/tetrad/calculator/expression/ExpressionManager$ParetoExpressionDescriptor.class edu/cmu/tetrad/search/FasStableConcurrentFdr$1DepthTask2.class edu/cmu/tetrad/data/DiscretizationSpec.class edu/pitt/dbmi/algo/bayesian/constraint/inference/BCInference.class edu/cmu/tetrad/algcomparison/simulation/TimeSeriesSemSimulation.class edu/cmu/tetrad/search/FasDci.class edu/cmu/tetrad/search/SemBicScoreD.class edu/cmu/tetrad/calculator/expression/ExpressionManager$AndExpressionDescriptor.class edu/cmu/tetrad/bayes/BayesProperties.class edu/cmu/tetrad/calculator/expression/ExpressionManager$GreaterThanOrEqualExpressionDescriptor.class edu/cmu/tetrad/search/FgesOld$1AdjTask.class edu/cmu/tetrad/search/FindTwoFactorClusters.class edu/cmu/tetrad/search/BffBeam$Move.class edu/cmu/tetrad/calculator/expression/ExpressionManager$AndExpressionDescriptor$1.class edu/cmu/tetrad/search/BffBeam$Score.class edu/cmu/tetrad/data/ContinuousVariable.class edu/cmu/tetrad/util/PM.class edu/cmu/tetrad/search/Ling$Mapping.class edu/cmu/tetrad/graph/UniformGraphGenerator.class edu/cmu/tetrad/search/PurifyTetradBased2.class edu/cmu/tetrad/graph/EndpointMatrixGraph.class edu/cmu/tetrad/util/TetradLoggerConfig.class edu/cmu/tetrad/search/Tetrad.class edu/cmu/tetrad/algcomparison/simulation/LoadContinuousDataSmithSim.class edu/cmu/tetrad/search/IndTestFisherZGeneralizedInverse.class edu/cmu/tetrad/search/DagSepsets.class edu/cmu/tetrad/search/FgesOld$1InitializeFromEmptyGraphTask.class edu/cmu/tetrad/gene/tetrad/gene/history/LaggedEdge.class edu/cmu/tetrad/search/DagInPatternIterator.class edu/cmu/tetrad/data/VerticalIntDataBox.class edu/cmu/tetrad/graph/DirectedEdgesOnly.class edu/cmu/tetrad/calculator/expression/Context.class edu/cmu/tetrad/calculator/expression/ExpressionManager$TanExpressionDescriptor.class edu/cmu/tetrad/algcomparison/utils/HasParameters.class edu/cmu/tetrad/data/KnowledgeTransferable.class edu/cmu/tetrad/data/MultiGeneralAndersonDarlingTest.class edu/cmu/tetrad/data/RegexTokenizer.class edu/cmu/tetrad/calculator/expression/VariableExpression.class edu/cmu/tetrad/data/Lineizer.class edu/cmu/tetrad/search/BffGes$Score.class edu/cmu/tetrad/graph/EndpointMatrixGraph$Pair.class edu/cmu/tetrad/sem/GeneralizedSemIm$4.class edu/cmu/tetrad/sem/StandardizedSemIm$Initialization.class edu/cmu/tetrad/graph/KamadaKawaiLayout$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$NewExpressionDescriptor2$1.class edu/cmu/tetrad/search/FasStable.class edu/cmu/tetrad/search/PcMaxLocal$1.class edu/cmu/tetrad/util/ForkJoinPoolInstance.class edu/cmu/tetrad/bayes/EmBayesEstimator.class edu/cmu/tetrad/search/FasStableConcurrent.class edu/cmu/tetrad/search/Mimbuild2$Function1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$TanhExpressionDescriptor$1.class edu/cmu/tetrad/util/RandomUtil.class edu/cmu/tetrad/search/XdslXmlParser.class edu/cmu/tetrad/util/StatUtils.class edu/cmu/tetrad/search/FgesOrienter$1AdjTask.class edu/cmu/tetrad/algcomparison/simulation/Simulation.class edu/cmu/tetrad/gene/tetrad/gene/simulation/MeasurementSimulator.class edu/cmu/tetrad/regression/RegressionDataset.class edu/cmu/tetrad/search/Fasts.class edu/cmu/tetrad/search/SepsetsConservativeMajority.class edu/cmu/tetrad/search/IndTestTimeSeries.class edu/cmu/tetrad/search/DeltaTetradTest.class edu/cmu/tetrad/search/TimeSeriesUtils$3.class edu/cmu/tetrad/search/Vcfas.class edu/cmu/tetrad/calculator/expression/ExpressionManager$Log10ExpressionDescriptor.class edu/cmu/tetrad/gene/tetrad/gene/history/TestPolynomialTerm.class edu/cmu/tetrad/search/Lofs2.class edu/cmu/tetrad/search/RecursivePartialCorrelation.class edu/cmu/tetrad/algcomparison/graph/RandomForward.class edu/cmu/tetrad/search/Fges$1.class edu/cmu/tetrad/gene/tetrad/gene/history/GeneHistory.class edu/cmu/tetrad/bayes/UpdatedBayesIm.class edu/cmu/tetrad/search/MeekRules.class edu/cmu/tetrad/search/IndTestFisherZConcatenateResiduals.class edu/cmu/tetrad/calculator/expression/AbstractExpressionDescriptor$Signature.class edu/cmu/tetrad/search/Glasso$3.class edu/cmu/tetrad/search/FasStableConcurrentFdr.class edu/cmu/tetrad/search/IndTestConditionalGaussianLRT.class edu/cmu/tetrad/search/BpcTetradPurifyWashdown.class edu/cmu/tetrad/search/MbUtils.class edu/cmu/tetrad/sem/Parameter.class edu/cmu/tetrad/search/CpcStable.class edu/cmu/tetrad/search/TimeSeriesUtils$2.class edu/cmu/tetrad/calculator/expression/ExpressionManager$SwitchExpressionDescriptor.class edu/cmu/tetrad/search/IndTestScore.class edu/cmu/tetrad/search/OrientCollidersMaxP$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$NormalExpressionDescriptor$1.class edu/cmu/tetrad/calculator/expression/ExpressionManager$PoissonExpressionDescriptor$1.class edu/cmu/tetrad/search/Glasso$2.class edu/cmu/tetrad/calculator/expression/ExpressionManager$LogNormalExpressionDescriptor.class edu/cmu/tetrad/search/DeltaTetradTest$Sigma.class edu/cmu/tetrad/search/GFci.class edu/cmu/tetrad/sem/GeneralizedSemIm$2.class edu/cmu/tetrad/bayes/DiscreteProbs.class edu/cmu/tetrad/search/SearchGraphUtils$AhdCounts.class edu/cmu/tetrad/gene/tetrad/gene/history/GraphRandomizer.class edu/cmu/tetrad/search/GraphChange$OrderedNodePair.class edu/cmu/tetrad/search/BpcAlgorithmType.class edu/cmu/tetrad/data/DiscreteVariable.class edu/cmu/tetrad/search/FindTwoFactorClusters$1.class edu/cmu/tetrad/util/TaskManager.class edu/cmu/tetrad/search/TsFges2$1.class edu/cmu/tetrad/sem/GeneralizedSemIm$1.class edu/cmu/tetrad/search/kernel/Kernel.class edu/cmu/tetrad/search/TimeSeriesUtils$1.class edu/cmu/tetrad/graph/Graph.class edu/cmu/tetrad/calculator/expression/ExpressionManager$DiscreteExpressionDescriptor.class edu/cmu/tetrad/calculator/expression/ExpressionManager$AdditionExpressionDescriptor$1.class edu/cmu/tetrad/search/Ling$StoredGraphs.class