@Manual{R-ape,
  title = {ape: Analyses of Phylogenetics and Evolution},
  author = {Emmanuel Paradis and Simon Blomberg and Ben Bolker and Joseph Brown and Julien Claude and Hoa Sien Cuong and Richard Desper and Gilles Didier and Benoit Durand and Julien Dutheil and RJ Ewing and Olivier Gascuel and Christoph Heibl and Anthony Ives and Bradley Jones and Franz Krah and Daniel Lawson and Vincent Lefort and Pierre Legendre and Jim Lemon and Rosemary McCloskey and Johan Nylander and Rainer Opgen-Rhein and Andrei-Alin Popescu and Manuela Royer-Carenzi and Klaus Schliep and Korbinian Strimmer and Damien {de Vienne}},
  year = {2017},
  note = {R package version 5.0},
  url = {https://CRAN.R-project.org/package=ape},
}
@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2017},
  url = {https://www.R-project.org/},
}
@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2017},
  note = {R package version 0.4},
  url = {https://CRAN.R-project.org/package=bookdown},
}
@Manual{R-devtools,
  title = {devtools: Tools to Make Developing R Packages Easier},
  author = {Hadley Wickham and Winston Chang},
  year = {2017},
  note = {R package version 1.13.4},
  url = {https://CRAN.R-project.org/package=devtools},
}
@Manual{R-Inapp,
  title = {Inapp: Reconstruction of Inapplicable Discrete Characters on Phylogenetic Trees},
  author = {{c)} and {person)} and {person))}},
  note = {R package version 0.3},
  year = {2018},
}
@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2018},
  note = {R package version 1.19},
  url = {https://CRAN.R-project.org/package=knitr},
}
@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Joe Cheng and Yihui Xie and Jonathan McPherson and Winston Chang and Jeff Allen and Hadley Wickham and Aron Atkins and Rob Hyndman and Ruben Arslan},
  year = {2017},
  note = {R package version 1.6},
  url = {https://CRAN.R-project.org/package=rmarkdown},
}