<!DOCTYPE html>

<html xmlns="http://www.w3.org/1999/xhtml">

<head>

<meta charset="utf-8" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="pandoc" />


<meta name="author" content="Lei Sun" />

<meta name="date" content="2017-06-21" />

<title>Rmosek: Primal vs Dual</title>

<script src="site_libs/jquery-1.11.3/jquery.min.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1" />
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
<script src="site_libs/jqueryui-1.11.4/jquery-ui.min.js"></script>
<link href="site_libs/tocify-1.9.1/jquery.tocify.css" rel="stylesheet" />
<script src="site_libs/tocify-1.9.1/jquery.tocify.js"></script>
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/highlightjs-9.12.0/textmate.css" rel="stylesheet" />
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
<link href="site_libs/font-awesome-4.5.0/css/font-awesome.min.css" rel="stylesheet" />

<style type="text/css">code{white-space: pre;}</style>
<style type="text/css">
  pre:not([class]) {
    background-color: white;
  }
</style>
<script type="text/javascript">
if (window.hljs) {
  hljs.configure({languages: []});
  hljs.initHighlightingOnLoad();
  if (document.readyState && document.readyState === "complete") {
    window.setTimeout(function() { hljs.initHighlighting(); }, 0);
  }
}
</script>



<style type="text/css">
h1 {
  font-size: 34px;
}
h1.title {
  font-size: 38px;
}
h2 {
  font-size: 30px;
}
h3 {
  font-size: 24px;
}
h4 {
  font-size: 18px;
}
h5 {
  font-size: 16px;
}
h6 {
  font-size: 12px;
}
.table th:not([align]) {
  text-align: left;
}
</style>


</head>

<body>

<style type = "text/css">
.main-container {
  max-width: 940px;
  margin-left: auto;
  margin-right: auto;
}
code {
  color: inherit;
  background-color: rgba(0, 0, 0, 0.04);
}
img {
  max-width:100%;
  height: auto;
}
.tabbed-pane {
  padding-top: 12px;
}
button.code-folding-btn:focus {
  outline: none;
}
</style>


<style type="text/css">
/* padding for bootstrap navbar */
body {
  padding-top: 51px;
  padding-bottom: 40px;
}
/* offset scroll position for anchor links (for fixed navbar)  */
.section h1 {
  padding-top: 56px;
  margin-top: -56px;
}

.section h2 {
  padding-top: 56px;
  margin-top: -56px;
}
.section h3 {
  padding-top: 56px;
  margin-top: -56px;
}
.section h4 {
  padding-top: 56px;
  margin-top: -56px;
}
.section h5 {
  padding-top: 56px;
  margin-top: -56px;
}
.section h6 {
  padding-top: 56px;
  margin-top: -56px;
}
</style>

<script>
// manage active state of menu based on current page
$(document).ready(function () {
  // active menu anchor
  href = window.location.pathname
  href = href.substr(href.lastIndexOf('/') + 1)
  if (href === "")
    href = "index.html";
  var menuAnchor = $('a[href="' + href + '"]');

  // mark it active
  menuAnchor.parent().addClass('active');

  // if it's got a parent navbar menu mark it active as well
  menuAnchor.closest('li.dropdown').addClass('active');
});
</script>


<div class="container-fluid main-container">

<!-- tabsets -->
<script>
$(document).ready(function () {
  window.buildTabsets("TOC");
});
</script>

<!-- code folding -->




<script>
$(document).ready(function ()  {

    // move toc-ignore selectors from section div to header
    $('div.section.toc-ignore')
        .removeClass('toc-ignore')
        .children('h1,h2,h3,h4,h5').addClass('toc-ignore');

    // establish options
    var options = {
      selectors: "h1,h2,h3",
      theme: "bootstrap3",
      context: '.toc-content',
      hashGenerator: function (text) {
        return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_').toLowerCase();
      },
      ignoreSelector: ".toc-ignore",
      scrollTo: 0
    };
    options.showAndHide = true;
    options.smoothScroll = true;

    // tocify
    var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>

<style type="text/css">

#TOC {
  margin: 25px 0px 20px 0px;
}
@media (max-width: 768px) {
#TOC {
  position: relative;
  width: 100%;
}
}


.toc-content {
  padding-left: 30px;
  padding-right: 40px;
}

div.main-container {
  max-width: 1200px;
}

div.tocify {
  width: 20%;
  max-width: 260px;
  max-height: 85%;
}

@media (min-width: 768px) and (max-width: 991px) {
  div.tocify {
    width: 25%;
  }
}

@media (max-width: 767px) {
  div.tocify {
    width: 100%;
    max-width: none;
  }
}

.tocify ul, .tocify li {
  line-height: 20px;
}

.tocify-subheader .tocify-item {
  font-size: 0.90em;
  padding-left: 25px;
  text-indent: 0;
}

.tocify .list-group-item {
  border-radius: 0px;
}


</style>

<!-- setup 3col/9col grid for toc_float and main content  -->
<div class="row-fluid">
<div class="col-xs-12 col-sm-4 col-md-3">
<div id="TOC" class="tocify">
</div>
</div>

<div class="toc-content col-xs-12 col-sm-8 col-md-9">




<div class="navbar navbar-default  navbar-fixed-top" role="navigation">
  <div class="container">
    <div class="navbar-header">
      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
        <span class="icon-bar"></span>
        <span class="icon-bar"></span>
        <span class="icon-bar"></span>
      </button>
      <a class="navbar-brand" href="index.html">truncash</a>
    </div>
    <div id="navbar" class="navbar-collapse collapse">
      <ul class="nav navbar-nav">
        <li>
  <a href="index.html">Home</a>
</li>
<li>
  <a href="about.html">About</a>
</li>
<li>
  <a href="license.html">License</a>
</li>
      </ul>
      <ul class="nav navbar-nav navbar-right">
        <li>
  <a href="https://github.com/LSun/truncash">
    <span class="fa fa-github"></span>
     
  </a>
</li>
      </ul>
    </div><!--/.nav-collapse -->
  </div><!--/.container -->
</div><!--/.navbar -->

<div class="fluid-row" id="header">



<h1 class="title toc-ignore"><code>Rmosek</code>: Primal vs Dual</h1>
<h4 class="author"><em>Lei Sun</em></h4>
<h4 class="date"><em>2017-06-21</em></h4>

</div>


<!-- The file analysis/chunks.R contains chunks that define default settings
shared across the workflowr files. -->
<!-- Update knitr chunk options -->
<!-- Insert the date the file was last updated -->
<p><strong>Last updated:</strong> 2017-12-21</p>
<!-- Insert the code version (Git commit SHA1) if Git repository exists and R
 package git2r is installed -->
<p><strong>Code version:</strong> 6e42447</p>
<!-- Add your analysis here -->
<section id="introduction" class="level2">
<h2>Introduction</h2>
<p>It has been <a href="https://lsun.github.io/truncash/mosek_reg.html">noted</a> that in the specific maximum likelihood estimation problem, optimization runs faster in the dual form than in the primal one. We are testing that with a simple numeric example.</p>
</section>
<section id="problem" class="level2">
<h2>Problem</h2>
<p>Let <span class="math inline">\(A_{n \times m}\)</span> be a matrix with <span class="math inline">\(n \gg m\)</span> and <span class="math inline">\(a\)</span> an <span class="math inline">\(n\)</span>-vector. The <a href="mosek_reg.html#basic_form:_primal">prototypical</a> convex optimization problem in my applications is</p>
<p><span class="math display">\[
\begin{array}{rl}
\min\limits_{f \in \mathbb{R}^m, \  \  g \in \mathbb{R}^n} &amp; -\sum\limits_{i = 1}^n\log\left(g_i\right) \\
\text{s.t.} &amp; Af + a = g\\
&amp; g \geq 0 \  .
\end{array}
\]</span> <strong>Note here the only reason we are adding the latent variable <span class="math inline">\(g\)</span> is that in this way we can code the problem using <code>Rmosek::mosek</code> as a “separable convex optimization” (SCOPT) problem.</strong></p>
<p>Its dual form is</p>
<p><span class="math display">\[
\begin{array}{rl}
\min\limits_{\nu \in \mathbb{R}^n} &amp; a^T\nu-\sum\limits_{i = 1}^n\log\left(\nu_i\right) \\
\text{s.t.} &amp; A^T\nu = 0\\
&amp; \nu\geq0 \  .
\end{array}
\]</span></p>
<p>The idea is that when <span class="math inline">\(n \gg m\)</span>, the dual optimization should be much faster than the primal one using <code>Rmosek::mosek</code>.</p>
</section>
<section id="comparison" class="level2">
<h2>Comparison</h2>
<p>Let <span class="math inline">\(n = 10^4\)</span>, <span class="math inline">\(m = 10\)</span>, so that indeed <span class="math inline">\(n \gg m\)</span>. We run <span class="math inline">\(1000\)</span> simulation trials. In each trial we feed the primal and the dual with the same <span class="math inline">\(A\)</span> and <span class="math inline">\(a\)</span>. <span class="math inline">\(A\)</span> and <span class="math inline">\(a\)</span> are generated so that both the primal and dual problems are feasible at least in theory. Now we are comparing accuracy, time cost, and numbers of iterations of the two forms.</p>
<p>In the following comparisons, we only compare the results when both primal and dual reach the optimal. Worthnoting is that out of <span class="math inline">\(1000\)</span> runs, the dual reaches optimal in all of them, whereas the primal doesn’t in 61 of them, or <span class="math inline">\(6.1\%\)</span>.</p>
<section id="total-time-cost" class="level3">
<h3>Total time cost</h3>
<p><img src="figure/rmosek_primal_dual.rmd/unnamed-chunk-3-1.png" width="672" style="display: block; margin: auto;" /><img src="figure/rmosek_primal_dual.rmd/unnamed-chunk-3-2.png" width="672" style="display: block; margin: auto;" /></p>
</section>
<section id="number-of-iterations" class="level3">
<h3>Number of iterations</h3>
<p><img src="figure/rmosek_primal_dual.rmd/unnamed-chunk-4-1.png" width="672" style="display: block; margin: auto;" /><img src="figure/rmosek_primal_dual.rmd/unnamed-chunk-4-2.png" width="672" style="display: block; margin: auto;" /></p>
</section>
<section id="time-per-iteration" class="level3">
<h3>Time per iteration</h3>
<p><img src="figure/rmosek_primal_dual.rmd/unnamed-chunk-5-1.png" width="672" style="display: block; margin: auto;" /><img src="figure/rmosek_primal_dual.rmd/unnamed-chunk-5-2.png" width="672" style="display: block; margin: auto;" /></p>
</section>
<section id="log-likelihood" class="level3">
<h3>Log likelihood</h3>
<p>It appears the dual form also gives better results in the sense that the log-likelihood given by dual is larger than the log-likelihood given by primal, when both reach the optimal. For both forms, the log-likelihood is given by <span class="math inline">\(\sum\log\left(Af + a\right) = \sum\log\left(g\right)\)</span>.</p>
<p><img src="figure/rmosek_primal_dual.rmd/unnamed-chunk-6-1.png" width="672" style="display: block; margin: auto;" /></p>
</section>
</section>
<section id="session-information" class="level2">
<h2>Session information</h2>
<!-- Insert the session information into the document -->
<pre class="r"><code>sessionInfo()</code></pre>
<pre><code>R version 3.4.3 (2017-11-30)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.2

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] compiler_3.4.3  backports_1.1.2 magrittr_1.5    rprojroot_1.3-1
 [5] tools_3.4.3     htmltools_0.3.6 yaml_2.1.16     Rcpp_0.12.14   
 [9] stringi_1.1.6   rmarkdown_1.8   knitr_1.17      git2r_0.20.0   
[13] stringr_1.2.0   digest_0.6.13   evaluate_0.10.1</code></pre>
</section>

<hr>
<p>
    This <a href="http://rmarkdown.rstudio.com">R Markdown</a> site was created with <a href="https://github.com/jdblischak/workflowr">workflowr</a>
</p>
<hr>

<!-- To enable disqus, uncomment the section below and provide your disqus_shortname -->

<!-- disqus
  <div id="disqus_thread"></div>
    <script type="text/javascript">
        /* * * CONFIGURATION VARIABLES: EDIT BEFORE PASTING INTO YOUR WEBPAGE * * */
        var disqus_shortname = 'rmarkdown'; // required: replace example with your forum shortname

        /* * * DON'T EDIT BELOW THIS LINE * * */
        (function() {
            var dsq = document.createElement('script'); dsq.type = 'text/javascript'; dsq.async = true;
            dsq.src = '//' + disqus_shortname + '.disqus.com/embed.js';
            (document.getElementsByTagName('head')[0] || document.getElementsByTagName('body')[0]).appendChild(dsq);
        })();
    </script>
    <noscript>Please enable JavaScript to view the <a href="http://disqus.com/?ref_noscript">comments powered by Disqus.</a></noscript>
    <a href="http://disqus.com" class="dsq-brlink">comments powered by <span class="logo-disqus">Disqus</span></a>
-->


</div>
</div>

</div>

<script>

// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
  $('tr.header').parent('thead').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
  bootstrapStylePandocTables();
});


</script>

<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
  (function () {
    var script = document.createElement("script");
    script.type = "text/javascript";
    script.src  = "https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML";
    document.getElementsByTagName("head")[0].appendChild(script);
  })();
</script>

</body>
</html>