Last updated: 2018-02-01

Code version: fe8ed5b

Introduction

Similar to previous simulation, only that the design matrix \(X\) is simulated such that the columns in \(X\) are independent.

Overall FDR and Power comparison

FDR and Power at low sparsity: \(20\%\) true signal

FDR and Power at high sparsity: \(10\%\) true signal

Session information

sessionInfo()
R version 3.4.3 (2017-11-30)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.2

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] ggplot2_2.2.1     reshape2_1.4.3    knockoff_0.3.0   
 [4] qvalue_2.10.0     ashr_2.2-2        Rmosek_8.0.69    
 [7] PolynomF_1.0-1    CVXR_0.94-4       REBayes_1.2      
[10] Matrix_1.2-12     SQUAREM_2017.10-1 EQL_1.0-0        
[13] ttutils_1.0-1    

loaded via a namespace (and not attached):
 [1] gmp_0.5-13.1      Rcpp_0.12.14      pillar_1.0.1     
 [4] plyr_1.8.4        compiler_3.4.3    git2r_0.21.0     
 [7] R.methodsS3_1.7.1 R.utils_2.6.0     iterators_1.0.9  
[10] tools_3.4.3       digest_0.6.14     bit_1.1-12       
[13] tibble_1.4.1      gtable_0.2.0      evaluate_0.10.1  
[16] lattice_0.20-35   rlang_0.1.6       foreach_1.4.4    
[19] yaml_2.1.16       parallel_3.4.3    Rmpfr_0.6-1      
[22] ECOSolveR_0.3-2   stringr_1.2.0     knitr_1.18       
[25] rprojroot_1.3-2   bit64_0.9-7       grid_3.4.3       
[28] R6_2.2.2          rmarkdown_1.8     magrittr_1.5     
[31] splines_3.4.3     scales_0.5.0      MASS_7.3-47      
[34] backports_1.1.2   codetools_0.2-15  htmltools_0.3.6  
[37] scs_1.1-1         colorspace_1.3-2  labeling_0.3     
[40] stringi_1.1.6     lazyeval_0.2.1    munsell_0.4.3    
[43] doParallel_1.0.11 pscl_1.5.2        truncnorm_1.0-7  
[46] R.oo_1.21.0

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